co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G23710

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901698: response to nitrogen compound	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:0009606: tropism	0.00E+00
4	GO:0090322: regulation of superoxide metabolic process	0.00E+00
5	GO:0000372: Group I intron splicing	0.00E+00
6	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
7	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
8	GO:0097164: ammonium ion metabolic process	0.00E+00
9	GO:0043972: histone H3-K23 acetylation	0.00E+00
10	GO:0045184: establishment of protein localization	0.00E+00
11	GO:0080127: fruit septum development	0.00E+00
12	GO:0033206: meiotic cytokinesis	0.00E+00
13	GO:0031222: arabinan catabolic process	0.00E+00
14	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
15	GO:0044154: histone H3-K14 acetylation	0.00E+00
16	GO:0045014: negative regulation of transcription by glucose	0.00E+00
17	GO:0046620: regulation of organ growth	8.43E-07
18	GO:0009734: auxin-activated signaling pathway	6.03E-06
19	GO:0042793: transcription from plastid promoter	1.09E-05
20	GO:0009416: response to light stimulus	1.68E-05
21	GO:0010305: leaf vascular tissue pattern formation	1.25E-04
22	GO:2000038: regulation of stomatal complex development	1.83E-04
23	GO:0010588: cotyledon vascular tissue pattern formation	2.40E-04
24	GO:0009733: response to auxin	3.67E-04
25	GO:0009913: epidermal cell differentiation	3.89E-04
26	GO:0010067: procambium histogenesis	5.17E-04
27	GO:2000033: regulation of seed dormancy process	5.17E-04
28	GO:1905039: carboxylic acid transmembrane transport	5.92E-04
29	GO:0080112: seed growth	5.92E-04
30	GO:1905200: gibberellic acid transmembrane transport	5.92E-04
31	GO:0043971: histone H3-K18 acetylation	5.92E-04
32	GO:0090558: plant epidermis development	5.92E-04
33	GO:1903866: palisade mesophyll development	5.92E-04
34	GO:0035987: endodermal cell differentiation	5.92E-04
35	GO:0034757: negative regulation of iron ion transport	5.92E-04
36	GO:0048016: inositol phosphate-mediated signaling	5.92E-04
37	GO:0042659: regulation of cell fate specification	5.92E-04
38	GO:0006955: immune response	6.60E-04
39	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	8.23E-04
40	GO:0042255: ribosome assembly	8.23E-04
41	GO:0006353: DNA-templated transcription, termination	8.23E-04
42	GO:0009658: chloroplast organization	9.53E-04
43	GO:0007389: pattern specification process	9.99E-04
44	GO:0009926: auxin polar transport	1.11E-03
45	GO:0048507: meristem development	1.19E-03
46	GO:0000373: Group II intron splicing	1.19E-03
47	GO:0010569: regulation of double-strand break repair via homologous recombination	1.27E-03
48	GO:0070981: L-asparagine biosynthetic process	1.27E-03
49	GO:0010271: regulation of chlorophyll catabolic process	1.27E-03
50	GO:0018026: peptidyl-lysine monomethylation	1.27E-03
51	GO:0009662: etioplast organization	1.27E-03
52	GO:1900033: negative regulation of trichome patterning	1.27E-03
53	GO:0080009: mRNA methylation	1.27E-03
54	GO:0018022: peptidyl-lysine methylation	1.27E-03
55	GO:0006529: asparagine biosynthetic process	1.27E-03
56	GO:2000123: positive regulation of stomatal complex development	1.27E-03
57	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.56E-03
58	GO:0048829: root cap development	1.65E-03
59	GO:0010252: auxin homeostasis	1.79E-03
60	GO:0080117: secondary growth	2.10E-03
61	GO:0090391: granum assembly	2.10E-03
62	GO:0010589: leaf proximal/distal pattern formation	2.10E-03
63	GO:0071705: nitrogen compound transport	2.10E-03
64	GO:0001578: microtubule bundle formation	2.10E-03
65	GO:0090708: specification of plant organ axis polarity	2.10E-03
66	GO:0010029: regulation of seed germination	2.41E-03
67	GO:0010102: lateral root morphogenesis	2.49E-03
68	GO:0009740: gibberellic acid mediated signaling pathway	2.74E-03
69	GO:0009800: cinnamic acid biosynthetic process	3.04E-03
70	GO:0046739: transport of virus in multicellular host	3.04E-03
71	GO:0006168: adenine salvage	3.04E-03
72	GO:1902290: positive regulation of defense response to oomycetes	3.04E-03
73	GO:0010371: regulation of gibberellin biosynthetic process	3.04E-03
74	GO:1902476: chloride transmembrane transport	3.04E-03
75	GO:0006166: purine ribonucleoside salvage	3.04E-03
76	GO:0051513: regulation of monopolar cell growth	3.04E-03
77	GO:0010239: chloroplast mRNA processing	3.04E-03
78	GO:0080188: RNA-directed DNA methylation	3.15E-03
79	GO:0009863: salicylic acid mediated signaling pathway	3.90E-03
80	GO:0010187: negative regulation of seed germination	3.90E-03
81	GO:2000377: regulation of reactive oxygen species metabolic process	3.90E-03
82	GO:0030104: water homeostasis	4.10E-03
83	GO:0006221: pyrimidine nucleotide biosynthetic process	4.10E-03
84	GO:0006808: regulation of nitrogen utilization	4.10E-03
85	GO:0006479: protein methylation	4.10E-03
86	GO:0048629: trichome patterning	4.10E-03
87	GO:1900864: mitochondrial RNA modification	4.10E-03
88	GO:0051322: anaphase	4.10E-03
89	GO:0071249: cellular response to nitrate	4.10E-03
90	GO:0035279: mRNA cleavage involved in gene silencing by miRNA	4.10E-03
91	GO:0003333: amino acid transmembrane transport	4.75E-03
92	GO:0016998: cell wall macromolecule catabolic process	4.75E-03
93	GO:0030001: metal ion transport	5.06E-03
94	GO:0009616: virus induced gene silencing	5.27E-03
95	GO:0080110: sporopollenin biosynthetic process	5.27E-03
96	GO:0006544: glycine metabolic process	5.27E-03
97	GO:0048497: maintenance of floral organ identity	5.27E-03
98	GO:0016123: xanthophyll biosynthetic process	5.27E-03
99	GO:0044209: AMP salvage	5.27E-03
100	GO:0032957: inositol trisphosphate metabolic process	5.27E-03
101	GO:0032876: negative regulation of DNA endoreduplication	5.27E-03
102	GO:0030308: negative regulation of cell growth	5.27E-03
103	GO:0010375: stomatal complex patterning	5.27E-03
104	GO:0009790: embryo development	5.38E-03
105	GO:0006284: base-excision repair	6.18E-03
106	GO:0040008: regulation of growth	6.48E-03
107	GO:0016554: cytidine to uridine editing	6.54E-03
108	GO:0042176: regulation of protein catabolic process	6.54E-03
109	GO:1902456: regulation of stomatal opening	6.54E-03
110	GO:0048831: regulation of shoot system development	6.54E-03
111	GO:0010315: auxin efflux	6.54E-03
112	GO:0006559: L-phenylalanine catabolic process	6.54E-03
113	GO:0003006: developmental process involved in reproduction	6.54E-03
114	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.54E-03
115	GO:0035435: phosphate ion transmembrane transport	6.54E-03
116	GO:0046855: inositol phosphate dephosphorylation	6.54E-03
117	GO:0009643: photosynthetic acclimation	6.54E-03
118	GO:0006563: L-serine metabolic process	6.54E-03
119	GO:0010405: arabinogalactan protein metabolic process	6.54E-03
120	GO:0009959: negative gravitropism	6.54E-03
121	GO:0009451: RNA modification	7.20E-03
122	GO:0010051: xylem and phloem pattern formation	7.25E-03
123	GO:0010087: phloem or xylem histogenesis	7.25E-03
124	GO:0000911: cytokinesis by cell plate formation	7.90E-03
125	GO:0048509: regulation of meristem development	7.90E-03
126	GO:2000037: regulation of stomatal complex patterning	7.90E-03
127	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	7.90E-03
128	GO:0010310: regulation of hydrogen peroxide metabolic process	7.90E-03
129	GO:2000067: regulation of root morphogenesis	7.90E-03
130	GO:0071470: cellular response to osmotic stress	7.90E-03
131	GO:0042538: hyperosmotic salinity response	7.94E-03
132	GO:0009739: response to gibberellin	8.25E-03
133	GO:0048825: cotyledon development	9.04E-03
134	GO:0006821: chloride transport	9.35E-03
135	GO:0035196: production of miRNAs involved in gene silencing by miRNA	9.35E-03
136	GO:0010103: stomatal complex morphogenesis	9.35E-03
137	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	9.35E-03
138	GO:0001522: pseudouridine synthesis	1.09E-02
139	GO:0009642: response to light intensity	1.09E-02
140	GO:0048766: root hair initiation	1.09E-02
141	GO:0055075: potassium ion homeostasis	1.09E-02
142	GO:0052543: callose deposition in cell wall	1.09E-02
143	GO:0010090: trichome morphogenesis	1.11E-02
144	GO:0048364: root development	1.14E-02
145	GO:0009639: response to red or far red light	1.18E-02
146	GO:0009880: embryonic pattern specification	1.25E-02
147	GO:0007186: G-protein coupled receptor signaling pathway	1.25E-02
148	GO:0001510: RNA methylation	1.25E-02
149	GO:0010233: phloem transport	1.25E-02
150	GO:0010497: plasmodesmata-mediated intercellular transport	1.25E-02
151	GO:0044030: regulation of DNA methylation	1.25E-02
152	GO:0010093: specification of floral organ identity	1.25E-02
153	GO:0006351: transcription, DNA-templated	1.34E-02
154	GO:0010027: thylakoid membrane organization	1.41E-02
155	GO:0048589: developmental growth	1.43E-02
156	GO:0009245: lipid A biosynthetic process	1.43E-02
157	GO:0042761: very long-chain fatty acid biosynthetic process	1.60E-02
158	GO:2000280: regulation of root development	1.60E-02
159	GO:0006349: regulation of gene expression by genetic imprinting	1.60E-02
160	GO:1900865: chloroplast RNA modification	1.60E-02
161	GO:0031425: chloroplast RNA processing	1.60E-02
162	GO:1900426: positive regulation of defense response to bacterium	1.60E-02
163	GO:0035999: tetrahydrofolate interconversion	1.60E-02
164	GO:0006535: cysteine biosynthetic process from serine	1.79E-02
165	GO:0030422: production of siRNA involved in RNA interference	1.79E-02
166	GO:0031627: telomeric loop formation	1.79E-02
167	GO:0010048: vernalization response	1.79E-02
168	GO:0000160: phosphorelay signal transduction system	1.94E-02
169	GO:0015770: sucrose transport	1.99E-02
170	GO:0009750: response to fructose	1.99E-02
171	GO:0046856: phosphatidylinositol dephosphorylation	1.99E-02
172	GO:0010015: root morphogenesis	1.99E-02
173	GO:0010218: response to far red light	2.03E-02
174	GO:0015706: nitrate transport	2.19E-02
175	GO:0010152: pollen maturation	2.19E-02
176	GO:0010582: floral meristem determinacy	2.19E-02
177	GO:0008361: regulation of cell size	2.19E-02
178	GO:0006865: amino acid transport	2.24E-02
179	GO:0009867: jasmonic acid mediated signaling pathway	2.34E-02
180	GO:0009691: cytokinin biosynthetic process	2.40E-02
181	GO:0009767: photosynthetic electron transport chain	2.40E-02
182	GO:0006468: protein phosphorylation	2.47E-02
183	GO:0045892: negative regulation of transcription, DNA-templated	2.50E-02
184	GO:0006355: regulation of transcription, DNA-templated	2.54E-02
185	GO:0006541: glutamine metabolic process	2.61E-02
186	GO:0010207: photosystem II assembly	2.61E-02
187	GO:0010020: chloroplast fission	2.61E-02
188	GO:0006270: DNA replication initiation	2.61E-02
189	GO:0010223: secondary shoot formation	2.61E-02
190	GO:0048467: gynoecium development	2.61E-02
191	GO:0010167: response to nitrate	2.83E-02
192	GO:0009901: anther dehiscence	2.83E-02
193	GO:0006071: glycerol metabolic process	3.06E-02
194	GO:0006833: water transport	3.06E-02
195	GO:0080147: root hair cell development	3.30E-02
196	GO:0019344: cysteine biosynthetic process	3.30E-02
197	GO:0008380: RNA splicing	3.40E-02
198	GO:0005975: carbohydrate metabolic process	3.52E-02
199	GO:0006874: cellular calcium ion homeostasis	3.54E-02
200	GO:0010073: meristem maintenance	3.54E-02
201	GO:0006825: copper ion transport	3.54E-02
202	GO:0051302: regulation of cell division	3.54E-02
203	GO:0010431: seed maturation	3.78E-02
204	GO:0031348: negative regulation of defense response	4.04E-02
205	GO:0009736: cytokinin-activated signaling pathway	4.06E-02
206	GO:0071215: cellular response to abscisic acid stimulus	4.29E-02
207	GO:0010082: regulation of root meristem growth	4.29E-02
208	GO:0009686: gibberellin biosynthetic process	4.29E-02
209	GO:0001944: vasculature development	4.29E-02
210	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.29E-02
211	GO:0009909: regulation of flower development	4.49E-02
212	GO:0048443: stamen development	4.55E-02
213	GO:0010089: xylem development	4.55E-02
214	GO:0010584: pollen exine formation	4.55E-02
215	GO:0070417: cellular response to cold	4.82E-02
216	GO:0048316: seed development	4.94E-02
217	GO:0048367: shoot system development	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0042834: peptidoglycan binding	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0016805: dipeptidase activity	5.05E-05
5	GO:0003723: RNA binding	5.65E-05
6	GO:0016279: protein-lysine N-methyltransferase activity	1.83E-04
7	GO:0008725: DNA-3-methyladenine glycosylase activity	2.77E-04
8	GO:0046030: inositol trisphosphate phosphatase activity	5.92E-04
9	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	5.92E-04
10	GO:0016274: protein-arginine N-methyltransferase activity	5.92E-04
11	GO:0004071: aspartate-ammonia ligase activity	5.92E-04
12	GO:0052381: tRNA dimethylallyltransferase activity	5.92E-04
13	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	5.92E-04
14	GO:0004016: adenylate cyclase activity	5.92E-04
15	GO:1905201: gibberellin transmembrane transporter activity	5.92E-04
16	GO:0003727: single-stranded RNA binding	7.99E-04
17	GO:0000989: transcription factor activity, transcription factor binding	1.19E-03
18	GO:0008805: carbon-monoxide oxygenase activity	1.27E-03
19	GO:0015929: hexosaminidase activity	1.27E-03
20	GO:0004563: beta-N-acetylhexosaminidase activity	1.27E-03
21	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.27E-03
22	GO:0009884: cytokinin receptor activity	1.27E-03
23	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.27E-03
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.27E-03
25	GO:0009672: auxin:proton symporter activity	1.41E-03
26	GO:0017150: tRNA dihydrouridine synthase activity	2.10E-03
27	GO:0045548: phenylalanine ammonia-lyase activity	2.10E-03
28	GO:0070181: small ribosomal subunit rRNA binding	2.10E-03
29	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	2.10E-03
30	GO:0005034: osmosensor activity	2.10E-03
31	GO:0016707: gibberellin 3-beta-dioxygenase activity	2.10E-03
32	GO:0004180: carboxypeptidase activity	2.10E-03
33	GO:0004871: signal transducer activity	2.29E-03
34	GO:0003725: double-stranded RNA binding	2.49E-03
35	GO:0010329: auxin efflux transmembrane transporter activity	2.49E-03
36	GO:0009982: pseudouridine synthase activity	2.49E-03
37	GO:0003999: adenine phosphoribosyltransferase activity	3.04E-03
38	GO:0009041: uridylate kinase activity	3.04E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	3.04E-03
40	GO:0005354: galactose transmembrane transporter activity	3.04E-03
41	GO:0010328: auxin influx transmembrane transporter activity	4.10E-03
42	GO:0010385: double-stranded methylated DNA binding	4.10E-03
43	GO:0005253: anion channel activity	4.10E-03
44	GO:0004930: G-protein coupled receptor activity	4.10E-03
45	GO:0046556: alpha-L-arabinofuranosidase activity	4.10E-03
46	GO:0010011: auxin binding	4.10E-03
47	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	5.18E-03
48	GO:0004372: glycine hydroxymethyltransferase activity	5.27E-03
49	GO:0030570: pectate lyase activity	5.68E-03
50	GO:0004674: protein serine/threonine kinase activity	6.20E-03
51	GO:0031177: phosphopantetheine binding	6.54E-03
52	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	6.54E-03
53	GO:0005247: voltage-gated chloride channel activity	6.54E-03
54	GO:0003688: DNA replication origin binding	6.54E-03
55	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.54E-03
56	GO:0005215: transporter activity	7.19E-03
57	GO:0001085: RNA polymerase II transcription factor binding	7.82E-03
58	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.90E-03
59	GO:0016832: aldehyde-lyase activity	7.90E-03
60	GO:0000035: acyl binding	7.90E-03
61	GO:0019900: kinase binding	7.90E-03
62	GO:0004124: cysteine synthase activity	7.90E-03
63	GO:0019901: protein kinase binding	9.04E-03
64	GO:0003690: double-stranded DNA binding	9.09E-03
65	GO:0003777: microtubule motor activity	9.91E-03
66	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.09E-02
67	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.18E-02
68	GO:0004650: polygalacturonase activity	1.22E-02
69	GO:0004519: endonuclease activity	1.22E-02
70	GO:0008173: RNA methyltransferase activity	1.25E-02
71	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.43E-02
72	GO:0004673: protein histidine kinase activity	1.79E-02
73	GO:0008171: O-methyltransferase activity	1.79E-02
74	GO:0003691: double-stranded telomeric DNA binding	1.99E-02
75	GO:0008515: sucrose transmembrane transporter activity	1.99E-02
76	GO:0016829: lyase activity	2.01E-02
77	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.13E-02
78	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.19E-02
79	GO:0003697: single-stranded DNA binding	2.34E-02
80	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.34E-02
81	GO:0004022: alcohol dehydrogenase (NAD) activity	2.40E-02
82	GO:0031072: heat shock protein binding	2.40E-02
83	GO:0000155: phosphorelay sensor kinase activity	2.40E-02
84	GO:0015114: phosphate ion transmembrane transporter activity	2.40E-02
85	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.61E-02
86	GO:0004970: ionotropic glutamate receptor activity	2.83E-02
87	GO:0051119: sugar transmembrane transporter activity	2.83E-02
88	GO:0005217: intracellular ligand-gated ion channel activity	2.83E-02
89	GO:0043621: protein self-association	3.27E-02
90	GO:0008134: transcription factor binding	3.30E-02
91	GO:0015293: symporter activity	3.39E-02
92	GO:0005345: purine nucleobase transmembrane transporter activity	3.54E-02
93	GO:0043424: protein histidine kinase binding	3.54E-02
94	GO:0003677: DNA binding	3.75E-02
95	GO:0035251: UDP-glucosyltransferase activity	3.78E-02
96	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.44E-02
97	GO:0015171: amino acid transmembrane transporter activity	4.49E-02
98	GO:0016788: hydrolase activity, acting on ester bonds	4.79E-02
99	GO:0018024: histone-lysine N-methyltransferase activity	4.82E-02