Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G22960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016553: base conversion or substitution editing0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0090279: regulation of calcium ion import0.00E+00
4GO:0090470: shoot organ boundary specification0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0071474: cellular hyperosmotic response0.00E+00
7GO:0018023: peptidyl-lysine trimethylation0.00E+00
8GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
9GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
10GO:0034337: RNA folding0.00E+00
11GO:0002184: cytoplasmic translational termination0.00E+00
12GO:1902171: regulation of tocopherol cyclase activity0.00E+00
13GO:0017038: protein import0.00E+00
14GO:0015995: chlorophyll biosynthetic process1.90E-17
15GO:0055114: oxidation-reduction process2.54E-08
16GO:0006782: protoporphyrinogen IX biosynthetic process6.63E-07
17GO:0010207: photosystem II assembly2.38E-06
18GO:0006783: heme biosynthetic process1.91E-05
19GO:0010206: photosystem II repair1.91E-05
20GO:0006779: porphyrin-containing compound biosynthetic process2.56E-05
21GO:0010021: amylopectin biosynthetic process6.70E-05
22GO:0010027: thylakoid membrane organization7.14E-05
23GO:0010143: cutin biosynthetic process7.88E-05
24GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.52E-04
25GO:1901259: chloroplast rRNA processing2.07E-04
26GO:0006633: fatty acid biosynthetic process2.80E-04
27GO:1902478: negative regulation of defense response to bacterium, incompatible interaction3.24E-04
28GO:0043489: RNA stabilization3.24E-04
29GO:1904966: positive regulation of vitamin E biosynthetic process3.24E-04
30GO:0043953: protein transport by the Tat complex3.24E-04
31GO:0000481: maturation of 5S rRNA3.24E-04
32GO:0015801: aromatic amino acid transport3.24E-04
33GO:1904964: positive regulation of phytol biosynthetic process3.24E-04
34GO:0065002: intracellular protein transmembrane transport3.24E-04
35GO:0043686: co-translational protein modification3.24E-04
36GO:0043087: regulation of GTPase activity3.24E-04
37GO:0046167: glycerol-3-phosphate biosynthetic process3.24E-04
38GO:1902458: positive regulation of stomatal opening3.24E-04
39GO:0010362: negative regulation of anion channel activity by blue light3.24E-04
40GO:0009090: homoserine biosynthetic process3.24E-04
41GO:0015969: guanosine tetraphosphate metabolic process3.24E-04
42GO:0016559: peroxisome fission3.40E-04
43GO:0048564: photosystem I assembly3.40E-04
44GO:0019252: starch biosynthetic process4.13E-04
45GO:0032544: plastid translation4.17E-04
46GO:0005982: starch metabolic process5.92E-04
47GO:1902326: positive regulation of chlorophyll biosynthetic process7.07E-04
48GO:0006432: phenylalanyl-tRNA aminoacylation7.07E-04
49GO:0018026: peptidyl-lysine monomethylation7.07E-04
50GO:0006435: threonyl-tRNA aminoacylation7.07E-04
51GO:0006650: glycerophospholipid metabolic process7.07E-04
52GO:0010155: regulation of proton transport7.07E-04
53GO:1903426: regulation of reactive oxygen species biosynthetic process7.07E-04
54GO:0051262: protein tetramerization7.07E-04
55GO:0010115: regulation of abscisic acid biosynthetic process7.07E-04
56GO:0009658: chloroplast organization7.38E-04
57GO:0009089: lysine biosynthetic process via diaminopimelate7.96E-04
58GO:0016024: CDP-diacylglycerol biosynthetic process9.08E-04
59GO:0009725: response to hormone1.03E-03
60GO:0034051: negative regulation of plant-type hypersensitive response1.15E-03
61GO:0046168: glycerol-3-phosphate catabolic process1.15E-03
62GO:0044375: regulation of peroxisome size1.15E-03
63GO:0005977: glycogen metabolic process1.15E-03
64GO:0033591: response to L-ascorbic acid1.15E-03
65GO:0015979: photosynthesis1.35E-03
66GO:0009735: response to cytokinin1.35E-03
67GO:0006424: glutamyl-tRNA aminoacylation1.65E-03
68GO:0006072: glycerol-3-phosphate metabolic process1.65E-03
69GO:2001141: regulation of RNA biosynthetic process1.65E-03
70GO:0009067: aspartate family amino acid biosynthetic process1.65E-03
71GO:0010371: regulation of gibberellin biosynthetic process1.65E-03
72GO:0006020: inositol metabolic process1.65E-03
73GO:0009102: biotin biosynthetic process1.65E-03
74GO:0010601: positive regulation of auxin biosynthetic process1.65E-03
75GO:0033014: tetrapyrrole biosynthetic process1.65E-03
76GO:0007017: microtubule-based process1.76E-03
77GO:0009744: response to sucrose1.87E-03
78GO:0006546: glycine catabolic process2.21E-03
79GO:0006021: inositol biosynthetic process2.21E-03
80GO:0010109: regulation of photosynthesis2.21E-03
81GO:0019464: glycine decarboxylation via glycine cleavage system2.21E-03
82GO:0009765: photosynthesis, light harvesting2.21E-03
83GO:0006412: translation2.30E-03
84GO:0032543: mitochondrial translation2.82E-03
85GO:0006564: L-serine biosynthetic process2.82E-03
86GO:0009904: chloroplast accumulation movement2.82E-03
87GO:0045038: protein import into chloroplast thylakoid membrane2.82E-03
88GO:0016120: carotene biosynthetic process2.82E-03
89GO:0031365: N-terminal protein amino acid modification2.82E-03
90GO:0016123: xanthophyll biosynthetic process2.82E-03
91GO:0000304: response to singlet oxygen2.82E-03
92GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.49E-03
93GO:0006014: D-ribose metabolic process3.49E-03
94GO:0009228: thiamine biosynthetic process3.49E-03
95GO:0046855: inositol phosphate dephosphorylation3.49E-03
96GO:0010304: PSII associated light-harvesting complex II catabolic process3.49E-03
97GO:0042549: photosystem II stabilization3.49E-03
98GO:0000470: maturation of LSU-rRNA3.49E-03
99GO:0006655: phosphatidylglycerol biosynthetic process3.49E-03
100GO:0048831: regulation of shoot system development3.49E-03
101GO:0009903: chloroplast avoidance movement4.20E-03
102GO:0030488: tRNA methylation4.20E-03
103GO:0009854: oxidative photosynthetic carbon pathway4.20E-03
104GO:0009088: threonine biosynthetic process4.20E-03
105GO:0009955: adaxial/abaxial pattern specification4.20E-03
106GO:0030163: protein catabolic process4.44E-03
107GO:0048437: floral organ development4.95E-03
108GO:0006400: tRNA modification4.95E-03
109GO:0009395: phospholipid catabolic process4.95E-03
110GO:0005978: glycogen biosynthetic process5.76E-03
111GO:0006605: protein targeting5.76E-03
112GO:0032508: DNA duplex unwinding5.76E-03
113GO:2000070: regulation of response to water deprivation5.76E-03
114GO:0050821: protein stabilization5.76E-03
115GO:0007186: G-protein coupled receptor signaling pathway6.60E-03
116GO:0006526: arginine biosynthetic process6.60E-03
117GO:0071482: cellular response to light stimulus6.60E-03
118GO:0022900: electron transport chain6.60E-03
119GO:0015996: chlorophyll catabolic process6.60E-03
120GO:0018298: protein-chromophore linkage7.35E-03
121GO:0006098: pentose-phosphate shunt7.48E-03
122GO:0090305: nucleic acid phosphodiester bond hydrolysis7.48E-03
123GO:0009086: methionine biosynthetic process8.41E-03
124GO:0010205: photoinhibition8.41E-03
125GO:0009638: phototropism8.41E-03
126GO:0009451: RNA modification8.84E-03
127GO:0045087: innate immune response9.33E-03
128GO:0006535: cysteine biosynthetic process from serine9.37E-03
129GO:0072593: reactive oxygen species metabolic process1.04E-02
130GO:0009773: photosynthetic electron transport in photosystem I1.04E-02
131GO:0006352: DNA-templated transcription, initiation1.04E-02
132GO:0008285: negative regulation of cell proliferation1.04E-02
133GO:0000272: polysaccharide catabolic process1.04E-02
134GO:0018119: peptidyl-cysteine S-nitrosylation1.04E-02
135GO:0019684: photosynthesis, light reaction1.04E-02
136GO:0006631: fatty acid metabolic process1.11E-02
137GO:0045037: protein import into chloroplast stroma1.14E-02
138GO:0006790: sulfur compound metabolic process1.14E-02
139GO:0006006: glucose metabolic process1.25E-02
140GO:0009785: blue light signaling pathway1.25E-02
141GO:0009718: anthocyanin-containing compound biosynthetic process1.25E-02
142GO:0006094: gluconeogenesis1.25E-02
143GO:0009767: photosynthetic electron transport chain1.25E-02
144GO:0010020: chloroplast fission1.36E-02
145GO:0019253: reductive pentose-phosphate cycle1.36E-02
146GO:0009266: response to temperature stimulus1.36E-02
147GO:0005975: carbohydrate metabolic process1.46E-02
148GO:0046854: phosphatidylinositol phosphorylation1.48E-02
149GO:0007031: peroxisome organization1.48E-02
150GO:0042254: ribosome biogenesis1.53E-02
151GO:0046686: response to cadmium ion1.54E-02
152GO:0010025: wax biosynthetic process1.60E-02
153GO:0006636: unsaturated fatty acid biosynthetic process1.60E-02
154GO:0006833: water transport1.60E-02
155GO:0006289: nucleotide-excision repair1.72E-02
156GO:0019344: cysteine biosynthetic process1.72E-02
157GO:0006418: tRNA aminoacylation for protein translation1.84E-02
158GO:0010073: meristem maintenance1.84E-02
159GO:0008299: isoprenoid biosynthetic process1.84E-02
160GO:0043086: negative regulation of catalytic activity1.93E-02
161GO:0006096: glycolytic process1.93E-02
162GO:0016114: terpenoid biosynthetic process1.97E-02
163GO:0003333: amino acid transmembrane transport1.97E-02
164GO:0048511: rhythmic process1.97E-02
165GO:0061077: chaperone-mediated protein folding1.97E-02
166GO:0031408: oxylipin biosynthetic process1.97E-02
167GO:0009416: response to light stimulus2.01E-02
168GO:0035428: hexose transmembrane transport2.10E-02
169GO:0080092: regulation of pollen tube growth2.10E-02
170GO:0016226: iron-sulfur cluster assembly2.10E-02
171GO:0010227: floral organ abscission2.23E-02
172GO:0006508: proteolysis2.28E-02
173GO:0006817: phosphate ion transport2.37E-02
174GO:0006396: RNA processing2.39E-02
175GO:0016117: carotenoid biosynthetic process2.51E-02
176GO:0042335: cuticle development2.65E-02
177GO:0034220: ion transmembrane transport2.65E-02
178GO:0010182: sugar mediated signaling pathway2.80E-02
179GO:0046323: glucose import2.80E-02
180GO:0009741: response to brassinosteroid2.80E-02
181GO:0006520: cellular amino acid metabolic process2.80E-02
182GO:0007018: microtubule-based movement2.95E-02
183GO:0009646: response to absence of light2.95E-02
184GO:0015031: protein transport2.96E-02
185GO:0016042: lipid catabolic process3.09E-02
186GO:0009791: post-embryonic development3.10E-02
187GO:0008654: phospholipid biosynthetic process3.10E-02
188GO:0009556: microsporogenesis3.10E-02
189GO:0009409: response to cold3.28E-02
190GO:0010090: trichome morphogenesis3.57E-02
191GO:0009567: double fertilization forming a zygote and endosperm3.73E-02
192GO:0006810: transport3.75E-02
193GO:0007623: circadian rhythm4.01E-02
194GO:0010228: vegetative to reproductive phase transition of meristem4.19E-02
195GO:0016126: sterol biosynthetic process4.23E-02
196GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.40E-02
197GO:0042128: nitrate assimilation4.57E-02
198GO:0016311: dephosphorylation4.92E-02
RankGO TermAdjusted P value
1GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
2GO:0050613: delta14-sterol reductase activity0.00E+00
3GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
4GO:0045435: lycopene epsilon cyclase activity0.00E+00
5GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
8GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
11GO:0004076: biotin synthase activity0.00E+00
12GO:0019144: ADP-sugar diphosphatase activity0.00E+00
13GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
14GO:0008887: glycerate kinase activity0.00E+00
15GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
16GO:0016851: magnesium chelatase activity1.80E-07
17GO:0019843: rRNA binding1.50E-06
18GO:0016491: oxidoreductase activity3.86E-06
19GO:0008266: poly(U) RNA binding7.88E-05
20GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.52E-04
21GO:0080042: ADP-glucose pyrophosphohydrolase activity3.24E-04
22GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.24E-04
23GO:0004325: ferrochelatase activity3.24E-04
24GO:0042586: peptide deformylase activity3.24E-04
25GO:0031957: very long-chain fatty acid-CoA ligase activity3.24E-04
26GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.24E-04
27GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.24E-04
28GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.24E-04
29GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity3.24E-04
30GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.24E-04
31GO:0005227: calcium activated cation channel activity3.24E-04
32GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.24E-04
33GO:0004829: threonine-tRNA ligase activity7.07E-04
34GO:0019156: isoamylase activity7.07E-04
35GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.07E-04
36GO:0008934: inositol monophosphate 1-phosphatase activity7.07E-04
37GO:0052833: inositol monophosphate 4-phosphatase activity7.07E-04
38GO:0008728: GTP diphosphokinase activity7.07E-04
39GO:0004826: phenylalanine-tRNA ligase activity7.07E-04
40GO:0004412: homoserine dehydrogenase activity7.07E-04
41GO:0050017: L-3-cyanoalanine synthase activity7.07E-04
42GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.07E-04
43GO:0042389: omega-3 fatty acid desaturase activity7.07E-04
44GO:0080041: ADP-ribose pyrophosphohydrolase activity7.07E-04
45GO:0009977: proton motive force dependent protein transmembrane transporter activity7.07E-04
46GO:0004617: phosphoglycerate dehydrogenase activity7.07E-04
47GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity7.07E-04
48GO:0052832: inositol monophosphate 3-phosphatase activity7.07E-04
49GO:0015173: aromatic amino acid transmembrane transporter activity7.07E-04
50GO:0003844: 1,4-alpha-glucan branching enzyme activity7.07E-04
51GO:0016630: protochlorophyllide reductase activity7.07E-04
52GO:0000049: tRNA binding9.08E-04
53GO:0003735: structural constituent of ribosome1.15E-03
54GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.15E-03
55GO:0002161: aminoacyl-tRNA editing activity1.15E-03
56GO:0004148: dihydrolipoyl dehydrogenase activity1.15E-03
57GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.15E-03
58GO:0070402: NADPH binding1.15E-03
59GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.15E-03
60GO:0015462: ATPase-coupled protein transmembrane transporter activity1.15E-03
61GO:0005504: fatty acid binding1.15E-03
62GO:0043169: cation binding1.15E-03
63GO:0005525: GTP binding1.31E-03
64GO:0003993: acid phosphatase activity1.43E-03
65GO:0009882: blue light photoreceptor activity1.65E-03
66GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.65E-03
67GO:0043023: ribosomal large subunit binding1.65E-03
68GO:0004072: aspartate kinase activity1.65E-03
69GO:0004375: glycine dehydrogenase (decarboxylating) activity1.65E-03
70GO:0003729: mRNA binding1.65E-03
71GO:0051537: 2 iron, 2 sulfur cluster binding2.06E-03
72GO:0043495: protein anchor2.21E-03
73GO:0016279: protein-lysine N-methyltransferase activity2.21E-03
74GO:0001053: plastid sigma factor activity2.21E-03
75GO:0070628: proteasome binding2.21E-03
76GO:0045430: chalcone isomerase activity2.21E-03
77GO:0016987: sigma factor activity2.21E-03
78GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.27E-03
79GO:0051287: NAD binding2.38E-03
80GO:0042802: identical protein binding2.50E-03
81GO:0005275: amine transmembrane transporter activity2.82E-03
82GO:0003959: NADPH dehydrogenase activity2.82E-03
83GO:0003723: RNA binding3.22E-03
84GO:0004629: phospholipase C activity3.49E-03
85GO:0004556: alpha-amylase activity3.49E-03
86GO:0000293: ferric-chelate reductase activity3.49E-03
87GO:0102229: amylopectin maltohydrolase activity3.49E-03
88GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.49E-03
89GO:2001070: starch binding3.49E-03
90GO:0004332: fructose-bisphosphate aldolase activity3.49E-03
91GO:0031593: polyubiquitin binding3.49E-03
92GO:0004872: receptor activity3.64E-03
93GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.20E-03
94GO:0004435: phosphatidylinositol phospholipase C activity4.20E-03
95GO:0102391: decanoate--CoA ligase activity4.20E-03
96GO:0004747: ribokinase activity4.20E-03
97GO:0016161: beta-amylase activity4.20E-03
98GO:0005261: cation channel activity4.20E-03
99GO:0004124: cysteine synthase activity4.20E-03
100GO:0016887: ATPase activity4.60E-03
101GO:0019899: enzyme binding4.95E-03
102GO:0004467: long-chain fatty acid-CoA ligase activity4.95E-03
103GO:0005200: structural constituent of cytoskeleton5.01E-03
104GO:0016597: amino acid binding5.32E-03
105GO:0008865: fructokinase activity5.76E-03
106GO:0008173: RNA methyltransferase activity6.60E-03
107GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.60E-03
108GO:0008135: translation factor activity, RNA binding6.60E-03
109GO:0008236: serine-type peptidase activity6.99E-03
110GO:0071949: FAD binding7.48E-03
111GO:0004222: metalloendopeptidase activity8.11E-03
112GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.41E-03
113GO:0003924: GTPase activity8.48E-03
114GO:0003746: translation elongation factor activity9.33E-03
115GO:0005089: Rho guanyl-nucleotide exchange factor activity1.04E-02
116GO:0016787: hydrolase activity1.07E-02
117GO:0004565: beta-galactosidase activity1.25E-02
118GO:0005315: inorganic phosphate transmembrane transporter activity1.25E-02
119GO:0000155: phosphorelay sensor kinase activity1.25E-02
120GO:0035091: phosphatidylinositol binding1.31E-02
121GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.36E-02
122GO:0016788: hydrolase activity, acting on ester bonds1.53E-02
123GO:0046872: metal ion binding1.55E-02
124GO:0051536: iron-sulfur cluster binding1.72E-02
125GO:0004857: enzyme inhibitor activity1.72E-02
126GO:0043130: ubiquitin binding1.72E-02
127GO:0005528: FK506 binding1.72E-02
128GO:0004176: ATP-dependent peptidase activity1.97E-02
129GO:0022891: substrate-specific transmembrane transporter activity2.23E-02
130GO:0030570: pectate lyase activity2.23E-02
131GO:0004812: aminoacyl-tRNA ligase activity2.51E-02
132GO:0016740: transferase activity2.70E-02
133GO:0010181: FMN binding2.95E-02
134GO:0016853: isomerase activity2.95E-02
135GO:0005355: glucose transmembrane transporter activity2.95E-02
136GO:0004252: serine-type endopeptidase activity3.23E-02
137GO:0030170: pyridoxal phosphate binding3.23E-02
138GO:0048038: quinone binding3.25E-02
139GO:0004518: nuclease activity3.41E-02
140GO:0003684: damaged DNA binding3.73E-02
141GO:0016791: phosphatase activity3.73E-02
142GO:0046910: pectinesterase inhibitor activity3.74E-02
143GO:0008483: transaminase activity3.89E-02
144GO:0008237: metallopeptidase activity3.89E-02
145GO:0008017: microtubule binding4.19E-02
146GO:0015250: water channel activity4.23E-02
147GO:0016168: chlorophyll binding4.40E-02
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Gene type



Gene DE type