GO Enrichment Analysis of Co-expressed Genes with
AT3G21250
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000491: small nucleolar ribonucleoprotein complex assembly | 0.00E+00 |
| 2 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 3 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 4 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 5 | GO:0009606: tropism | 0.00E+00 |
| 6 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 7 | GO:0000492: box C/D snoRNP assembly | 0.00E+00 |
| 8 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 9 | GO:0042793: transcription from plastid promoter | 1.73E-09 |
| 10 | GO:0009451: RNA modification | 2.16E-07 |
| 11 | GO:0009658: chloroplast organization | 9.23E-07 |
| 12 | GO:2000038: regulation of stomatal complex development | 2.30E-05 |
| 13 | GO:0048437: floral organ development | 1.03E-04 |
| 14 | GO:0006955: immune response | 1.03E-04 |
| 15 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 1.73E-04 |
| 16 | GO:1903866: palisade mesophyll development | 1.73E-04 |
| 17 | GO:0010063: positive regulation of trichoblast fate specification | 1.73E-04 |
| 18 | GO:0010480: microsporocyte differentiation | 1.73E-04 |
| 19 | GO:0090063: positive regulation of microtubule nucleation | 1.73E-04 |
| 20 | GO:0034757: negative regulation of iron ion transport | 1.73E-04 |
| 21 | GO:0048229: gametophyte development | 3.31E-04 |
| 22 | GO:0010254: nectary development | 3.92E-04 |
| 23 | GO:0033566: gamma-tubulin complex localization | 3.92E-04 |
| 24 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.92E-04 |
| 25 | GO:0010434: bract formation | 3.92E-04 |
| 26 | GO:0048439: flower morphogenesis | 3.92E-04 |
| 27 | GO:0070981: L-asparagine biosynthetic process | 3.92E-04 |
| 28 | GO:0010271: regulation of chlorophyll catabolic process | 3.92E-04 |
| 29 | GO:0018026: peptidyl-lysine monomethylation | 3.92E-04 |
| 30 | GO:0009662: etioplast organization | 3.92E-04 |
| 31 | GO:1904143: positive regulation of carotenoid biosynthetic process | 3.92E-04 |
| 32 | GO:0006529: asparagine biosynthetic process | 3.92E-04 |
| 33 | GO:2000123: positive regulation of stomatal complex development | 3.92E-04 |
| 34 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.92E-04 |
| 35 | GO:0080117: secondary growth | 6.40E-04 |
| 36 | GO:0090391: granum assembly | 6.40E-04 |
| 37 | GO:0006518: peptide metabolic process | 6.40E-04 |
| 38 | GO:0042780: tRNA 3'-end processing | 6.40E-04 |
| 39 | GO:0001578: microtubule bundle formation | 6.40E-04 |
| 40 | GO:0009954: proximal/distal pattern formation | 6.40E-04 |
| 41 | GO:0009432: SOS response | 6.40E-04 |
| 42 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 6.40E-04 |
| 43 | GO:0016998: cell wall macromolecule catabolic process | 8.10E-04 |
| 44 | GO:0046739: transport of virus in multicellular host | 9.13E-04 |
| 45 | GO:0000730: DNA recombinase assembly | 9.13E-04 |
| 46 | GO:0010371: regulation of gibberellin biosynthetic process | 9.13E-04 |
| 47 | GO:1902476: chloride transmembrane transport | 9.13E-04 |
| 48 | GO:0010071: root meristem specification | 9.13E-04 |
| 49 | GO:0010239: chloroplast mRNA processing | 9.13E-04 |
| 50 | GO:0051322: anaphase | 1.21E-03 |
| 51 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.24E-03 |
| 52 | GO:0009646: response to absence of light | 1.40E-03 |
| 53 | GO:0032876: negative regulation of DNA endoreduplication | 1.54E-03 |
| 54 | GO:0030308: negative regulation of cell growth | 1.54E-03 |
| 55 | GO:0010375: stomatal complex patterning | 1.54E-03 |
| 56 | GO:0048497: maintenance of floral organ identity | 1.54E-03 |
| 57 | GO:0080156: mitochondrial mRNA modification | 1.60E-03 |
| 58 | GO:0032502: developmental process | 1.70E-03 |
| 59 | GO:0009793: embryo development ending in seed dormancy | 1.74E-03 |
| 60 | GO:0016554: cytidine to uridine editing | 1.89E-03 |
| 61 | GO:0010315: auxin efflux | 1.89E-03 |
| 62 | GO:0009913: epidermal cell differentiation | 1.89E-03 |
| 63 | GO:0048831: regulation of shoot system development | 1.89E-03 |
| 64 | GO:0010067: procambium histogenesis | 2.27E-03 |
| 65 | GO:1901259: chloroplast rRNA processing | 2.27E-03 |
| 66 | GO:0048509: regulation of meristem development | 2.27E-03 |
| 67 | GO:2000037: regulation of stomatal complex patterning | 2.27E-03 |
| 68 | GO:0009955: adaxial/abaxial pattern specification | 2.27E-03 |
| 69 | GO:0010027: thylakoid membrane organization | 2.30E-03 |
| 70 | GO:0042148: strand invasion | 2.67E-03 |
| 71 | GO:0006821: chloride transport | 2.67E-03 |
| 72 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 2.67E-03 |
| 73 | GO:0030162: regulation of proteolysis | 3.09E-03 |
| 74 | GO:0042255: ribosome assembly | 3.09E-03 |
| 75 | GO:0006353: DNA-templated transcription, termination | 3.09E-03 |
| 76 | GO:0048766: root hair initiation | 3.09E-03 |
| 77 | GO:0001522: pseudouridine synthesis | 3.09E-03 |
| 78 | GO:0000160: phosphorelay signal transduction system | 3.14E-03 |
| 79 | GO:0010212: response to ionizing radiation | 3.54E-03 |
| 80 | GO:0010497: plasmodesmata-mediated intercellular transport | 3.54E-03 |
| 81 | GO:0009657: plastid organization | 3.54E-03 |
| 82 | GO:0032544: plastid translation | 3.54E-03 |
| 83 | GO:0007389: pattern specification process | 3.54E-03 |
| 84 | GO:0000373: Group II intron splicing | 4.00E-03 |
| 85 | GO:0000902: cell morphogenesis | 4.00E-03 |
| 86 | GO:1900865: chloroplast RNA modification | 4.49E-03 |
| 87 | GO:0042761: very long-chain fatty acid biosynthetic process | 4.49E-03 |
| 88 | GO:0009416: response to light stimulus | 5.09E-03 |
| 89 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.52E-03 |
| 90 | GO:0048366: leaf development | 5.81E-03 |
| 91 | GO:0045037: protein import into chloroplast stroma | 6.06E-03 |
| 92 | GO:0010582: floral meristem determinacy | 6.06E-03 |
| 93 | GO:0008361: regulation of cell size | 6.06E-03 |
| 94 | GO:0006312: mitotic recombination | 6.06E-03 |
| 95 | GO:0009736: cytokinin-activated signaling pathway | 6.55E-03 |
| 96 | GO:0010102: lateral root morphogenesis | 6.61E-03 |
| 97 | GO:0009691: cytokinin biosynthetic process | 6.61E-03 |
| 98 | GO:0010075: regulation of meristem growth | 6.61E-03 |
| 99 | GO:0006541: glutamine metabolic process | 7.20E-03 |
| 100 | GO:0010020: chloroplast fission | 7.20E-03 |
| 101 | GO:0010223: secondary shoot formation | 7.20E-03 |
| 102 | GO:0009934: regulation of meristem structural organization | 7.20E-03 |
| 103 | GO:0045892: negative regulation of transcription, DNA-templated | 7.96E-03 |
| 104 | GO:0006071: glycerol metabolic process | 8.41E-03 |
| 105 | GO:0009944: polarity specification of adaxial/abaxial axis | 9.03E-03 |
| 106 | GO:0010431: seed maturation | 1.03E-02 |
| 107 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.17E-02 |
| 108 | GO:0071215: cellular response to abscisic acid stimulus | 1.17E-02 |
| 109 | GO:0010082: regulation of root meristem growth | 1.17E-02 |
| 110 | GO:0001944: vasculature development | 1.17E-02 |
| 111 | GO:0010227: floral organ abscission | 1.17E-02 |
| 112 | GO:0042127: regulation of cell proliferation | 1.24E-02 |
| 113 | GO:0010089: xylem development | 1.24E-02 |
| 114 | GO:0070417: cellular response to cold | 1.32E-02 |
| 115 | GO:0009790: embryo development | 1.37E-02 |
| 116 | GO:0042631: cellular response to water deprivation | 1.39E-02 |
| 117 | GO:0000226: microtubule cytoskeleton organization | 1.39E-02 |
| 118 | GO:0008033: tRNA processing | 1.39E-02 |
| 119 | GO:0010087: phloem or xylem histogenesis | 1.39E-02 |
| 120 | GO:0048653: anther development | 1.39E-02 |
| 121 | GO:0010305: leaf vascular tissue pattern formation | 1.47E-02 |
| 122 | GO:0009958: positive gravitropism | 1.47E-02 |
| 123 | GO:0048868: pollen tube development | 1.47E-02 |
| 124 | GO:0009741: response to brassinosteroid | 1.47E-02 |
| 125 | GO:0007018: microtubule-based movement | 1.54E-02 |
| 126 | GO:0006814: sodium ion transport | 1.54E-02 |
| 127 | GO:0009734: auxin-activated signaling pathway | 1.57E-02 |
| 128 | GO:0048825: cotyledon development | 1.62E-02 |
| 129 | GO:0009851: auxin biosynthetic process | 1.62E-02 |
| 130 | GO:0010583: response to cyclopentenone | 1.78E-02 |
| 131 | GO:0019761: glucosinolate biosynthetic process | 1.78E-02 |
| 132 | GO:0009630: gravitropism | 1.78E-02 |
| 133 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 1.81E-02 |
| 134 | GO:0006351: transcription, DNA-templated | 1.83E-02 |
| 135 | GO:0007166: cell surface receptor signaling pathway | 1.85E-02 |
| 136 | GO:0010090: trichome morphogenesis | 1.87E-02 |
| 137 | GO:0008380: RNA splicing | 1.93E-02 |
| 138 | GO:0010252: auxin homeostasis | 1.95E-02 |
| 139 | GO:0009828: plant-type cell wall loosening | 1.95E-02 |
| 140 | GO:0006310: DNA recombination | 1.95E-02 |
| 141 | GO:0071805: potassium ion transmembrane transport | 2.04E-02 |
| 142 | GO:0007267: cell-cell signaling | 2.04E-02 |
| 143 | GO:0000910: cytokinesis | 2.12E-02 |
| 144 | GO:0001666: response to hypoxia | 2.21E-02 |
| 145 | GO:0010029: regulation of seed germination | 2.30E-02 |
| 146 | GO:0006468: protein phosphorylation | 2.31E-02 |
| 147 | GO:0006974: cellular response to DNA damage stimulus | 2.39E-02 |
| 148 | GO:0048481: plant ovule development | 2.67E-02 |
| 149 | GO:0009832: plant-type cell wall biogenesis | 2.77E-02 |
| 150 | GO:0048767: root hair elongation | 2.77E-02 |
| 151 | GO:0009407: toxin catabolic process | 2.87E-02 |
| 152 | GO:0030001: metal ion transport | 3.47E-02 |
| 153 | GO:0006355: regulation of transcription, DNA-templated | 3.56E-02 |
| 154 | GO:0008283: cell proliferation | 3.79E-02 |
| 155 | GO:0009926: auxin polar transport | 3.79E-02 |
| 156 | GO:0009636: response to toxic substance | 4.12E-02 |
| 157 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 4.34E-02 |
| 158 | GO:0009664: plant-type cell wall organization | 4.45E-02 |
| 159 | GO:0042538: hyperosmotic salinity response | 4.45E-02 |
| 160 | GO:0006364: rRNA processing | 4.68E-02 |
| 161 | GO:0006813: potassium ion transport | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042834: peptidoglycan binding | 0.00E+00 |
| 2 | GO:0004519: endonuclease activity | 4.96E-08 |
| 3 | GO:0003723: RNA binding | 1.58E-04 |
| 4 | GO:0004071: aspartate-ammonia ligase activity | 1.73E-04 |
| 5 | GO:0052381: tRNA dimethylallyltransferase activity | 1.73E-04 |
| 6 | GO:0004016: adenylate cyclase activity | 1.73E-04 |
| 7 | GO:0008836: diaminopimelate decarboxylase activity | 1.73E-04 |
| 8 | GO:0019843: rRNA binding | 2.63E-04 |
| 9 | GO:0009884: cytokinin receptor activity | 3.92E-04 |
| 10 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 3.92E-04 |
| 11 | GO:0009982: pseudouridine synthase activity | 4.32E-04 |
| 12 | GO:0017150: tRNA dihydrouridine synthase activity | 6.40E-04 |
| 13 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 6.40E-04 |
| 14 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 6.40E-04 |
| 15 | GO:0005034: osmosensor activity | 6.40E-04 |
| 16 | GO:0008508: bile acid:sodium symporter activity | 9.13E-04 |
| 17 | GO:0001872: (1->3)-beta-D-glucan binding | 9.13E-04 |
| 18 | GO:0003777: microtubule motor activity | 9.97E-04 |
| 19 | GO:0005253: anion channel activity | 1.21E-03 |
| 20 | GO:0016279: protein-lysine N-methyltransferase activity | 1.21E-03 |
| 21 | GO:0019901: protein kinase binding | 1.50E-03 |
| 22 | GO:0005247: voltage-gated chloride channel activity | 1.89E-03 |
| 23 | GO:0019900: kinase binding | 2.27E-03 |
| 24 | GO:0000150: recombinase activity | 2.67E-03 |
| 25 | GO:0030515: snoRNA binding | 2.67E-03 |
| 26 | GO:0000400: four-way junction DNA binding | 3.09E-03 |
| 27 | GO:0004520: endodeoxyribonuclease activity | 3.09E-03 |
| 28 | GO:0003697: single-stranded DNA binding | 3.78E-03 |
| 29 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 4.00E-03 |
| 30 | GO:0009672: auxin:proton symporter activity | 4.49E-03 |
| 31 | GO:0004673: protein histidine kinase activity | 4.99E-03 |
| 32 | GO:0008327: methyl-CpG binding | 5.52E-03 |
| 33 | GO:0010329: auxin efflux transmembrane transporter activity | 6.61E-03 |
| 34 | GO:0000155: phosphorelay sensor kinase activity | 6.61E-03 |
| 35 | GO:0003690: double-stranded DNA binding | 6.78E-03 |
| 36 | GO:0004672: protein kinase activity | 7.95E-03 |
| 37 | GO:0005515: protein binding | 8.58E-03 |
| 38 | GO:0043424: protein histidine kinase binding | 9.69E-03 |
| 39 | GO:0005345: purine nucleobase transmembrane transporter activity | 9.69E-03 |
| 40 | GO:0015079: potassium ion transmembrane transporter activity | 9.69E-03 |
| 41 | GO:0008094: DNA-dependent ATPase activity | 1.03E-02 |
| 42 | GO:0033612: receptor serine/threonine kinase binding | 1.03E-02 |
| 43 | GO:0003727: single-stranded RNA binding | 1.24E-02 |
| 44 | GO:0003713: transcription coactivator activity | 1.47E-02 |
| 45 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.51E-02 |
| 46 | GO:0008017: microtubule binding | 1.69E-02 |
| 47 | GO:0005215: transporter activity | 1.72E-02 |
| 48 | GO:0000156: phosphorelay response regulator activity | 1.87E-02 |
| 49 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.04E-02 |
| 50 | GO:0042802: identical protein binding | 2.06E-02 |
| 51 | GO:0051213: dioxygenase activity | 2.21E-02 |
| 52 | GO:0030247: polysaccharide binding | 2.48E-02 |
| 53 | GO:0004222: metalloendopeptidase activity | 2.87E-02 |
| 54 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.16E-02 |
| 55 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.47E-02 |
| 56 | GO:0004364: glutathione transferase activity | 3.68E-02 |
| 57 | GO:0003677: DNA binding | 4.98E-02 |