GO Enrichment Analysis of Co-expressed Genes with
AT3G20015
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 3 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 4 | GO:0045184: establishment of protein localization | 0.00E+00 |
| 5 | GO:0009606: tropism | 0.00E+00 |
| 6 | GO:1903224: regulation of endodermal cell differentiation | 0.00E+00 |
| 7 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 8 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 9 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 10 | GO:0042793: transcription from plastid promoter | 1.59E-10 |
| 11 | GO:0009451: RNA modification | 1.33E-07 |
| 12 | GO:0009657: plastid organization | 2.77E-05 |
| 13 | GO:0016556: mRNA modification | 6.19E-05 |
| 14 | GO:0009658: chloroplast organization | 6.41E-05 |
| 15 | GO:2000038: regulation of stomatal complex development | 1.09E-04 |
| 16 | GO:0016998: cell wall macromolecule catabolic process | 3.07E-04 |
| 17 | GO:1901259: chloroplast rRNA processing | 3.21E-04 |
| 18 | GO:0048437: floral organ development | 4.14E-04 |
| 19 | GO:0006955: immune response | 4.14E-04 |
| 20 | GO:0042659: regulation of cell fate specification | 4.32E-04 |
| 21 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 4.32E-04 |
| 22 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 4.32E-04 |
| 23 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 4.32E-04 |
| 24 | GO:0080112: seed growth | 4.32E-04 |
| 25 | GO:0090558: plant epidermis development | 4.32E-04 |
| 26 | GO:0043247: telomere maintenance in response to DNA damage | 4.32E-04 |
| 27 | GO:1905039: carboxylic acid transmembrane transport | 4.32E-04 |
| 28 | GO:0033044: regulation of chromosome organization | 4.32E-04 |
| 29 | GO:1905200: gibberellic acid transmembrane transport | 4.32E-04 |
| 30 | GO:1903866: palisade mesophyll development | 4.32E-04 |
| 31 | GO:0010063: positive regulation of trichoblast fate specification | 4.32E-04 |
| 32 | GO:0010480: microsporocyte differentiation | 4.32E-04 |
| 33 | GO:0035987: endodermal cell differentiation | 4.32E-04 |
| 34 | GO:0006436: tryptophanyl-tRNA aminoacylation | 4.32E-04 |
| 35 | GO:0034757: negative regulation of iron ion transport | 4.32E-04 |
| 36 | GO:0032204: regulation of telomere maintenance | 4.32E-04 |
| 37 | GO:0007389: pattern specification process | 6.32E-04 |
| 38 | GO:1900865: chloroplast RNA modification | 8.92E-04 |
| 39 | GO:0048255: mRNA stabilization | 9.33E-04 |
| 40 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 9.33E-04 |
| 41 | GO:0010569: regulation of double-strand break repair via homologous recombination | 9.33E-04 |
| 42 | GO:0010271: regulation of chlorophyll catabolic process | 9.33E-04 |
| 43 | GO:0018026: peptidyl-lysine monomethylation | 9.33E-04 |
| 44 | GO:0009662: etioplast organization | 9.33E-04 |
| 45 | GO:0042325: regulation of phosphorylation | 9.33E-04 |
| 46 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 9.33E-04 |
| 47 | GO:1904143: positive regulation of carotenoid biosynthetic process | 9.33E-04 |
| 48 | GO:0080009: mRNA methylation | 9.33E-04 |
| 49 | GO:0009875: pollen-pistil interaction | 9.33E-04 |
| 50 | GO:2000123: positive regulation of stomatal complex development | 9.33E-04 |
| 51 | GO:0006420: arginyl-tRNA aminoacylation | 9.33E-04 |
| 52 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 9.33E-04 |
| 53 | GO:0045037: protein import into chloroplast stroma | 1.36E-03 |
| 54 | GO:0090708: specification of plant organ axis polarity | 1.52E-03 |
| 55 | GO:0080117: secondary growth | 1.52E-03 |
| 56 | GO:0090391: granum assembly | 1.52E-03 |
| 57 | GO:0006518: peptide metabolic process | 1.52E-03 |
| 58 | GO:0042780: tRNA 3'-end processing | 1.52E-03 |
| 59 | GO:0001578: microtubule bundle formation | 1.52E-03 |
| 60 | GO:0032504: multicellular organism reproduction | 1.52E-03 |
| 61 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 1.52E-03 |
| 62 | GO:0010239: chloroplast mRNA processing | 2.19E-03 |
| 63 | GO:0010306: rhamnogalacturonan II biosynthetic process | 2.19E-03 |
| 64 | GO:0046739: transport of virus in multicellular host | 2.19E-03 |
| 65 | GO:2001141: regulation of RNA biosynthetic process | 2.19E-03 |
| 66 | GO:0007004: telomere maintenance via telomerase | 2.19E-03 |
| 67 | GO:0010371: regulation of gibberellin biosynthetic process | 2.19E-03 |
| 68 | GO:1902476: chloride transmembrane transport | 2.19E-03 |
| 69 | GO:0010071: root meristem specification | 2.19E-03 |
| 70 | GO:0051513: regulation of monopolar cell growth | 2.19E-03 |
| 71 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.42E-03 |
| 72 | GO:0030104: water homeostasis | 2.95E-03 |
| 73 | GO:0044205: 'de novo' UMP biosynthetic process | 2.95E-03 |
| 74 | GO:0006479: protein methylation | 2.95E-03 |
| 75 | GO:0042274: ribosomal small subunit biogenesis | 2.95E-03 |
| 76 | GO:0051322: anaphase | 2.95E-03 |
| 77 | GO:0032876: negative regulation of DNA endoreduplication | 3.78E-03 |
| 78 | GO:0030308: negative regulation of cell growth | 3.78E-03 |
| 79 | GO:0010375: stomatal complex patterning | 3.78E-03 |
| 80 | GO:0048497: maintenance of floral organ identity | 3.78E-03 |
| 81 | GO:0006282: regulation of DNA repair | 3.78E-03 |
| 82 | GO:0016554: cytidine to uridine editing | 4.68E-03 |
| 83 | GO:0009913: epidermal cell differentiation | 4.68E-03 |
| 84 | GO:0006655: phosphatidylglycerol biosynthetic process | 4.68E-03 |
| 85 | GO:0010315: auxin efflux | 4.68E-03 |
| 86 | GO:0048831: regulation of shoot system development | 4.68E-03 |
| 87 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 4.68E-03 |
| 88 | GO:0048868: pollen tube development | 4.83E-03 |
| 89 | GO:0017148: negative regulation of translation | 5.64E-03 |
| 90 | GO:0009942: longitudinal axis specification | 5.64E-03 |
| 91 | GO:0048509: regulation of meristem development | 5.64E-03 |
| 92 | GO:2000037: regulation of stomatal complex patterning | 5.64E-03 |
| 93 | GO:2000067: regulation of root morphogenesis | 5.64E-03 |
| 94 | GO:0009955: adaxial/abaxial pattern specification | 5.64E-03 |
| 95 | GO:0080156: mitochondrial mRNA modification | 5.97E-03 |
| 96 | GO:0010583: response to cyclopentenone | 6.38E-03 |
| 97 | GO:0006821: chloride transport | 6.67E-03 |
| 98 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 6.67E-03 |
| 99 | GO:0010044: response to aluminum ion | 6.67E-03 |
| 100 | GO:0007050: cell cycle arrest | 6.67E-03 |
| 101 | GO:0010252: auxin homeostasis | 7.24E-03 |
| 102 | GO:0009828: plant-type cell wall loosening | 7.24E-03 |
| 103 | GO:0001522: pseudouridine synthesis | 7.76E-03 |
| 104 | GO:0048766: root hair initiation | 7.76E-03 |
| 105 | GO:0055075: potassium ion homeostasis | 7.76E-03 |
| 106 | GO:0052543: callose deposition in cell wall | 7.76E-03 |
| 107 | GO:0009734: auxin-activated signaling pathway | 8.25E-03 |
| 108 | GO:0010027: thylakoid membrane organization | 8.65E-03 |
| 109 | GO:0010497: plasmodesmata-mediated intercellular transport | 8.91E-03 |
| 110 | GO:0006526: arginine biosynthetic process | 8.91E-03 |
| 111 | GO:0032544: plastid translation | 8.91E-03 |
| 112 | GO:0006303: double-strand break repair via nonhomologous end joining | 8.91E-03 |
| 113 | GO:0071482: cellular response to light stimulus | 8.91E-03 |
| 114 | GO:0010332: response to gamma radiation | 1.01E-02 |
| 115 | GO:0000373: Group II intron splicing | 1.01E-02 |
| 116 | GO:0000902: cell morphogenesis | 1.01E-02 |
| 117 | GO:0010411: xyloglucan metabolic process | 1.02E-02 |
| 118 | GO:0048481: plant ovule development | 1.13E-02 |
| 119 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.14E-02 |
| 120 | GO:2000280: regulation of root development | 1.14E-02 |
| 121 | GO:0031425: chloroplast RNA processing | 1.14E-02 |
| 122 | GO:0000160: phosphorelay signal transduction system | 1.19E-02 |
| 123 | GO:0009790: embryo development | 1.20E-02 |
| 124 | GO:0009416: response to light stimulus | 1.23E-02 |
| 125 | GO:0006535: cysteine biosynthetic process from serine | 1.27E-02 |
| 126 | GO:0048829: root cap development | 1.27E-02 |
| 127 | GO:0006259: DNA metabolic process | 1.27E-02 |
| 128 | GO:0009793: embryo development ending in seed dormancy | 1.29E-02 |
| 129 | GO:0006265: DNA topological change | 1.41E-02 |
| 130 | GO:0015770: sucrose transport | 1.41E-02 |
| 131 | GO:0006352: DNA-templated transcription, initiation | 1.41E-02 |
| 132 | GO:0048229: gametophyte development | 1.41E-02 |
| 133 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.55E-02 |
| 134 | GO:0008361: regulation of cell size | 1.55E-02 |
| 135 | GO:0010588: cotyledon vascular tissue pattern formation | 1.70E-02 |
| 136 | GO:0009691: cytokinin biosynthetic process | 1.70E-02 |
| 137 | GO:0010075: regulation of meristem growth | 1.70E-02 |
| 138 | GO:0010207: photosystem II assembly | 1.85E-02 |
| 139 | GO:0009934: regulation of meristem structural organization | 1.85E-02 |
| 140 | GO:0009926: auxin polar transport | 1.86E-02 |
| 141 | GO:0042546: cell wall biogenesis | 1.94E-02 |
| 142 | GO:0080188: RNA-directed DNA methylation | 2.01E-02 |
| 143 | GO:0009901: anther dehiscence | 2.01E-02 |
| 144 | GO:0006833: water transport | 2.17E-02 |
| 145 | GO:0000027: ribosomal large subunit assembly | 2.33E-02 |
| 146 | GO:0019344: cysteine biosynthetic process | 2.33E-02 |
| 147 | GO:0009116: nucleoside metabolic process | 2.33E-02 |
| 148 | GO:0006418: tRNA aminoacylation for protein translation | 2.50E-02 |
| 149 | GO:0010073: meristem maintenance | 2.50E-02 |
| 150 | GO:0051302: regulation of cell division | 2.50E-02 |
| 151 | GO:0009736: cytokinin-activated signaling pathway | 2.51E-02 |
| 152 | GO:0003333: amino acid transmembrane transport | 2.68E-02 |
| 153 | GO:0015992: proton transport | 2.68E-02 |
| 154 | GO:0010431: seed maturation | 2.68E-02 |
| 155 | GO:0016226: iron-sulfur cluster assembly | 2.85E-02 |
| 156 | GO:0006730: one-carbon metabolic process | 2.85E-02 |
| 157 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 3.04E-02 |
| 158 | GO:0071215: cellular response to abscisic acid stimulus | 3.04E-02 |
| 159 | GO:0010082: regulation of root meristem growth | 3.04E-02 |
| 160 | GO:0048367: shoot system development | 3.06E-02 |
| 161 | GO:0048366: leaf development | 3.16E-02 |
| 162 | GO:0010091: trichome branching | 3.22E-02 |
| 163 | GO:0042127: regulation of cell proliferation | 3.22E-02 |
| 164 | GO:0070417: cellular response to cold | 3.41E-02 |
| 165 | GO:0009553: embryo sac development | 3.47E-02 |
| 166 | GO:0042631: cellular response to water deprivation | 3.61E-02 |
| 167 | GO:0000226: microtubule cytoskeleton organization | 3.61E-02 |
| 168 | GO:0008033: tRNA processing | 3.61E-02 |
| 169 | GO:0000413: protein peptidyl-prolyl isomerization | 3.61E-02 |
| 170 | GO:0010087: phloem or xylem histogenesis | 3.61E-02 |
| 171 | GO:0048653: anther development | 3.61E-02 |
| 172 | GO:0009742: brassinosteroid mediated signaling pathway | 3.78E-02 |
| 173 | GO:0009958: positive gravitropism | 3.81E-02 |
| 174 | GO:0010305: leaf vascular tissue pattern formation | 3.81E-02 |
| 175 | GO:0006662: glycerol ether metabolic process | 3.81E-02 |
| 176 | GO:0009741: response to brassinosteroid | 3.81E-02 |
| 177 | GO:0007018: microtubule-based movement | 4.01E-02 |
| 178 | GO:0006814: sodium ion transport | 4.01E-02 |
| 179 | GO:0007059: chromosome segregation | 4.01E-02 |
| 180 | GO:0009646: response to absence of light | 4.01E-02 |
| 181 | GO:0010183: pollen tube guidance | 4.21E-02 |
| 182 | GO:0048825: cotyledon development | 4.21E-02 |
| 183 | GO:0008654: phospholipid biosynthetic process | 4.21E-02 |
| 184 | GO:0009851: auxin biosynthetic process | 4.21E-02 |
| 185 | GO:0032502: developmental process | 4.63E-02 |
| 186 | GO:0009630: gravitropism | 4.63E-02 |
| 187 | GO:0010090: trichome morphogenesis | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042834: peptidoglycan binding | 0.00E+00 |
| 2 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
| 3 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
| 4 | GO:0004358: glutamate N-acetyltransferase activity | 0.00E+00 |
| 5 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 6 | GO:0004519: endonuclease activity | 1.31E-09 |
| 7 | GO:0003723: RNA binding | 1.02E-07 |
| 8 | GO:0019843: rRNA binding | 4.05E-04 |
| 9 | GO:1905201: gibberellin transmembrane transporter activity | 4.32E-04 |
| 10 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 4.32E-04 |
| 11 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 4.32E-04 |
| 12 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 4.32E-04 |
| 13 | GO:0016274: protein-arginine N-methyltransferase activity | 4.32E-04 |
| 14 | GO:0052381: tRNA dimethylallyltransferase activity | 4.32E-04 |
| 15 | GO:0004830: tryptophan-tRNA ligase activity | 4.32E-04 |
| 16 | GO:0004016: adenylate cyclase activity | 4.32E-04 |
| 17 | GO:0009672: auxin:proton symporter activity | 8.92E-04 |
| 18 | GO:0008805: carbon-monoxide oxygenase activity | 9.33E-04 |
| 19 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 9.33E-04 |
| 20 | GO:0009884: cytokinin receptor activity | 9.33E-04 |
| 21 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 9.33E-04 |
| 22 | GO:0004814: arginine-tRNA ligase activity | 9.33E-04 |
| 23 | GO:0004047: aminomethyltransferase activity | 9.33E-04 |
| 24 | GO:0008237: metallopeptidase activity | 1.06E-03 |
| 25 | GO:0017150: tRNA dihydrouridine synthase activity | 1.52E-03 |
| 26 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 1.52E-03 |
| 27 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 1.52E-03 |
| 28 | GO:0016805: dipeptidase activity | 1.52E-03 |
| 29 | GO:0005034: osmosensor activity | 1.52E-03 |
| 30 | GO:0010329: auxin efflux transmembrane transporter activity | 1.55E-03 |
| 31 | GO:0009982: pseudouridine synthase activity | 1.55E-03 |
| 32 | GO:0004222: metalloendopeptidase activity | 1.94E-03 |
| 33 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 2.19E-03 |
| 34 | GO:0043023: ribosomal large subunit binding | 2.19E-03 |
| 35 | GO:0008508: bile acid:sodium symporter activity | 2.19E-03 |
| 36 | GO:0001872: (1->3)-beta-D-glucan binding | 2.19E-03 |
| 37 | GO:0004176: ATP-dependent peptidase activity | 2.94E-03 |
| 38 | GO:0016987: sigma factor activity | 2.95E-03 |
| 39 | GO:0005253: anion channel activity | 2.95E-03 |
| 40 | GO:0016279: protein-lysine N-methyltransferase activity | 2.95E-03 |
| 41 | GO:0001053: plastid sigma factor activity | 2.95E-03 |
| 42 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 3.78E-03 |
| 43 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 3.78E-03 |
| 44 | GO:0005247: voltage-gated chloride channel activity | 4.68E-03 |
| 45 | GO:0004605: phosphatidate cytidylyltransferase activity | 4.68E-03 |
| 46 | GO:0003777: microtubule motor activity | 5.35E-03 |
| 47 | GO:0019901: protein kinase binding | 5.57E-03 |
| 48 | GO:0019900: kinase binding | 5.64E-03 |
| 49 | GO:0004124: cysteine synthase activity | 5.64E-03 |
| 50 | GO:0008195: phosphatidate phosphatase activity | 5.64E-03 |
| 51 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 5.97E-03 |
| 52 | GO:0004427: inorganic diphosphatase activity | 6.67E-03 |
| 53 | GO:0008173: RNA methyltransferase activity | 8.91E-03 |
| 54 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 8.91E-03 |
| 55 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.02E-02 |
| 56 | GO:0004673: protein histidine kinase activity | 1.27E-02 |
| 57 | GO:0008515: sucrose transmembrane transporter activity | 1.41E-02 |
| 58 | GO:0008559: xenobiotic-transporting ATPase activity | 1.41E-02 |
| 59 | GO:0003993: acid phosphatase activity | 1.50E-02 |
| 60 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 1.55E-02 |
| 61 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.70E-02 |
| 62 | GO:0000155: phosphorelay sensor kinase activity | 1.70E-02 |
| 63 | GO:0019888: protein phosphatase regulator activity | 1.70E-02 |
| 64 | GO:0005215: transporter activity | 1.82E-02 |
| 65 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.85E-02 |
| 66 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.99E-02 |
| 67 | GO:0051119: sugar transmembrane transporter activity | 2.01E-02 |
| 68 | GO:0008168: methyltransferase activity | 2.46E-02 |
| 69 | GO:0043424: protein histidine kinase binding | 2.50E-02 |
| 70 | GO:0033612: receptor serine/threonine kinase binding | 2.68E-02 |
| 71 | GO:0008408: 3'-5' exonuclease activity | 2.68E-02 |
| 72 | GO:0030570: pectate lyase activity | 3.04E-02 |
| 73 | GO:0047134: protein-disulfide reductase activity | 3.41E-02 |
| 74 | GO:0004812: aminoacyl-tRNA ligase activity | 3.41E-02 |
| 75 | GO:0008026: ATP-dependent helicase activity | 3.78E-02 |
| 76 | GO:0001085: RNA polymerase II transcription factor binding | 3.81E-02 |
| 77 | GO:0004527: exonuclease activity | 3.81E-02 |
| 78 | GO:0003713: transcription coactivator activity | 3.81E-02 |
| 79 | GO:0004386: helicase activity | 3.89E-02 |
| 80 | GO:0004791: thioredoxin-disulfide reductase activity | 4.01E-02 |
| 81 | GO:0000156: phosphorelay response regulator activity | 4.85E-02 |
| 82 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.85E-02 |