Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G19850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042794: rRNA transcription from plastid promoter0.00E+00
2GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
3GO:0044154: histone H3-K14 acetylation0.00E+00
4GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
5GO:0090627: plant epidermal cell differentiation0.00E+00
6GO:0009606: tropism0.00E+00
7GO:0090322: regulation of superoxide metabolic process0.00E+00
8GO:0000372: Group I intron splicing0.00E+00
9GO:1903224: regulation of endodermal cell differentiation0.00E+00
10GO:0043972: histone H3-K23 acetylation0.00E+00
11GO:0050776: regulation of immune response0.00E+00
12GO:1901698: response to nitrogen compound0.00E+00
13GO:0010480: microsporocyte differentiation0.00E+00
14GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
15GO:0007638: mechanosensory behavior0.00E+00
16GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
17GO:0097164: ammonium ion metabolic process0.00E+00
18GO:0045184: establishment of protein localization0.00E+00
19GO:0015843: methylammonium transport0.00E+00
20GO:0090615: mitochondrial mRNA processing0.00E+00
21GO:0031222: arabinan catabolic process0.00E+00
22GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.08E-10
23GO:0046620: regulation of organ growth1.51E-06
24GO:0009734: auxin-activated signaling pathway3.28E-06
25GO:0006468: protein phosphorylation1.33E-05
26GO:0042793: transcription from plastid promoter1.69E-05
27GO:0009926: auxin polar transport4.20E-05
28GO:0048437: floral organ development4.34E-05
29GO:0007389: pattern specification process8.73E-05
30GO:0009451: RNA modification1.55E-04
31GO:0030422: production of siRNA involved in RNA interference1.90E-04
32GO:0048229: gametophyte development2.35E-04
33GO:2000038: regulation of stomatal complex development2.41E-04
34GO:1900864: mitochondrial RNA modification2.41E-04
35GO:0009733: response to auxin2.99E-04
36GO:0032502: developmental process3.16E-04
37GO:0010252: auxin homeostasis3.89E-04
38GO:0009658: chloroplast organization4.29E-04
39GO:0009913: epidermal cell differentiation5.03E-04
40GO:0034757: negative regulation of iron ion transport7.03E-04
41GO:0034970: histone H3-R2 methylation7.03E-04
42GO:0042659: regulation of cell fate specification7.03E-04
43GO:0034972: histone H3-R26 methylation7.03E-04
44GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic7.03E-04
45GO:0010063: positive regulation of trichoblast fate specification7.03E-04
46GO:0043971: histone H3-K18 acetylation7.03E-04
47GO:0090558: plant epidermis development7.03E-04
48GO:0034971: histone H3-R17 methylation7.03E-04
49GO:1903866: palisade mesophyll development7.03E-04
50GO:0035987: endodermal cell differentiation7.03E-04
51GO:0006436: tryptophanyl-tRNA aminoacylation7.03E-04
52GO:0010342: endosperm cellularization7.03E-04
53GO:0006955: immune response8.51E-04
54GO:0042255: ribosome assembly1.06E-03
55GO:0010305: leaf vascular tissue pattern formation1.49E-03
56GO:2000123: positive regulation of stomatal complex development1.52E-03
57GO:0010254: nectary development1.52E-03
58GO:0070981: L-asparagine biosynthetic process1.52E-03
59GO:0010271: regulation of chlorophyll catabolic process1.52E-03
60GO:0018026: peptidyl-lysine monomethylation1.52E-03
61GO:1902326: positive regulation of chlorophyll biosynthetic process1.52E-03
62GO:0009662: etioplast organization1.52E-03
63GO:1900033: negative regulation of trichome patterning1.52E-03
64GO:0010434: bract formation1.52E-03
65GO:1904143: positive regulation of carotenoid biosynthetic process1.52E-03
66GO:0080009: mRNA methylation1.52E-03
67GO:0009786: regulation of asymmetric cell division1.52E-03
68GO:0048439: flower morphogenesis1.52E-03
69GO:0006529: asparagine biosynthetic process1.52E-03
70GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.52E-03
71GO:0000373: Group II intron splicing1.54E-03
72GO:0000902: cell morphogenesis1.54E-03
73GO:1900865: chloroplast RNA modification1.83E-03
74GO:0009416: response to light stimulus1.99E-03
75GO:0010583: response to cyclopentenone2.13E-03
76GO:0048829: root cap development2.14E-03
77GO:0040008: regulation of growth2.47E-03
78GO:0045910: negative regulation of DNA recombination2.50E-03
79GO:0080117: secondary growth2.50E-03
80GO:0090708: specification of plant organ axis polarity2.50E-03
81GO:0090391: granum assembly2.50E-03
82GO:0010589: leaf proximal/distal pattern formation2.50E-03
83GO:0042780: tRNA 3'-end processing2.50E-03
84GO:0001578: microtubule bundle formation2.50E-03
85GO:0071705: nitrogen compound transport2.50E-03
86GO:0009954: proximal/distal pattern formation2.50E-03
87GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.50E-03
88GO:0010582: floral meristem determinacy2.84E-03
89GO:0000910: cytokinesis2.91E-03
90GO:0010075: regulation of meristem growth3.23E-03
91GO:0009767: photosynthetic electron transport chain3.23E-03
92GO:0009800: cinnamic acid biosynthetic process3.64E-03
93GO:0051639: actin filament network formation3.64E-03
94GO:0010239: chloroplast mRNA processing3.64E-03
95GO:0044211: CTP salvage3.64E-03
96GO:0015696: ammonium transport3.64E-03
97GO:0046739: transport of virus in multicellular host3.64E-03
98GO:0019048: modulation by virus of host morphology or physiology3.64E-03
99GO:2000904: regulation of starch metabolic process3.64E-03
100GO:1902290: positive regulation of defense response to oomycetes3.64E-03
101GO:0009558: embryo sac cellularization3.64E-03
102GO:0043572: plastid fission3.64E-03
103GO:0031048: chromatin silencing by small RNA3.64E-03
104GO:0010371: regulation of gibberellin biosynthetic process3.64E-03
105GO:1902476: chloride transmembrane transport3.64E-03
106GO:0010071: root meristem specification3.64E-03
107GO:0051513: regulation of monopolar cell growth3.64E-03
108GO:0007231: osmosensory signaling pathway3.64E-03
109GO:0010020: chloroplast fission3.65E-03
110GO:0009934: regulation of meristem structural organization3.65E-03
111GO:0048481: plant ovule development4.42E-03
112GO:0000160: phosphorelay signal transduction system4.71E-03
113GO:0051764: actin crosslink formation4.92E-03
114GO:0030104: water homeostasis4.92E-03
115GO:0051322: anaphase4.92E-03
116GO:0033500: carbohydrate homeostasis4.92E-03
117GO:0071249: cellular response to nitrate4.92E-03
118GO:0035279: mRNA cleavage involved in gene silencing by miRNA4.92E-03
119GO:0072488: ammonium transmembrane transport4.92E-03
120GO:0000914: phragmoplast assembly4.92E-03
121GO:0051567: histone H3-K9 methylation4.92E-03
122GO:0044206: UMP salvage4.92E-03
123GO:0006479: protein methylation4.92E-03
124GO:0048629: trichome patterning4.92E-03
125GO:0009944: polarity specification of adaxial/abaxial axis5.08E-03
126GO:0048364: root development5.81E-03
127GO:0006306: DNA methylation6.18E-03
128GO:0016998: cell wall macromolecule catabolic process6.18E-03
129GO:0010438: cellular response to sulfur starvation6.33E-03
130GO:0010158: abaxial cell fate specification6.33E-03
131GO:0032876: negative regulation of DNA endoreduplication6.33E-03
132GO:0030308: negative regulation of cell growth6.33E-03
133GO:0010375: stomatal complex patterning6.33E-03
134GO:0009616: virus induced gene silencing6.33E-03
135GO:0048497: maintenance of floral organ identity6.33E-03
136GO:0006544: glycine metabolic process6.33E-03
137GO:1902183: regulation of shoot apical meristem development6.33E-03
138GO:0016123: xanthophyll biosynthetic process6.33E-03
139GO:0010082: regulation of root meristem growth7.40E-03
140GO:0009959: negative gravitropism7.86E-03
141GO:0006655: phosphatidylglycerol biosynthetic process7.86E-03
142GO:0048831: regulation of shoot system development7.86E-03
143GO:0035194: posttranscriptional gene silencing by RNA7.86E-03
144GO:0016554: cytidine to uridine editing7.86E-03
145GO:0016458: gene silencing7.86E-03
146GO:0010315: auxin efflux7.86E-03
147GO:0009643: photosynthetic acclimation7.86E-03
148GO:0006559: L-phenylalanine catabolic process7.86E-03
149GO:0006206: pyrimidine nucleobase metabolic process7.86E-03
150GO:0006563: L-serine metabolic process7.86E-03
151GO:0018258: protein O-linked glycosylation via hydroxyproline7.86E-03
152GO:0010405: arabinogalactan protein metabolic process7.86E-03
153GO:0010304: PSII associated light-harvesting complex II catabolic process7.86E-03
154GO:0009790: embryo development8.05E-03
155GO:0006351: transcription, DNA-templated8.20E-03
156GO:0048653: anther development9.46E-03
157GO:2000067: regulation of root morphogenesis9.51E-03
158GO:0009955: adaxial/abaxial pattern specification9.51E-03
159GO:0009942: longitudinal axis specification9.51E-03
160GO:0048509: regulation of meristem development9.51E-03
161GO:0010067: procambium histogenesis9.51E-03
162GO:0030488: tRNA methylation9.51E-03
163GO:1901259: chloroplast rRNA processing9.51E-03
164GO:2000037: regulation of stomatal complex patterning9.51E-03
165GO:0010310: regulation of hydrogen peroxide metabolic process9.51E-03
166GO:0009741: response to brassinosteroid1.02E-02
167GO:0009646: response to absence of light1.10E-02
168GO:0007018: microtubule-based movement1.10E-02
169GO:0006821: chloride transport1.13E-02
170GO:0010050: vegetative phase change1.13E-02
171GO:0035196: production of miRNAs involved in gene silencing by miRNA1.13E-02
172GO:0010103: stomatal complex morphogenesis1.13E-02
173GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.13E-02
174GO:0009610: response to symbiotic fungus1.13E-02
175GO:0048825: cotyledon development1.18E-02
176GO:0005975: carbohydrate metabolic process1.18E-02
177GO:0009736: cytokinin-activated signaling pathway1.22E-02
178GO:0009739: response to gibberellin1.23E-02
179GO:0080156: mitochondrial mRNA modification1.27E-02
180GO:0006355: regulation of transcription, DNA-templated1.31E-02
181GO:0010439: regulation of glucosinolate biosynthetic process1.32E-02
182GO:0001522: pseudouridine synthesis1.32E-02
183GO:0009850: auxin metabolic process1.32E-02
184GO:0030162: regulation of proteolysis1.32E-02
185GO:0006353: DNA-templated transcription, termination1.32E-02
186GO:0048766: root hair initiation1.32E-02
187GO:0055075: potassium ion homeostasis1.32E-02
188GO:0008380: RNA splicing1.36E-02
189GO:0009909: regulation of flower development1.39E-02
190GO:0009827: plant-type cell wall modification1.51E-02
191GO:0001510: RNA methylation1.51E-02
192GO:0044030: regulation of DNA methylation1.51E-02
193GO:0010497: plasmodesmata-mediated intercellular transport1.51E-02
194GO:0009657: plastid organization1.51E-02
195GO:0010093: specification of floral organ identity1.51E-02
196GO:0009793: embryo development ending in seed dormancy1.52E-02
197GO:0009828: plant-type cell wall loosening1.54E-02
198GO:0009051: pentose-phosphate shunt, oxidative branch1.72E-02
199GO:2000024: regulation of leaf development1.72E-02
200GO:0009245: lipid A biosynthetic process1.72E-02
201GO:0048507: meristem development1.72E-02
202GO:0051607: defense response to virus1.74E-02
203GO:0010027: thylakoid membrane organization1.84E-02
204GO:0042761: very long-chain fatty acid biosynthetic process1.94E-02
205GO:2000280: regulation of root development1.94E-02
206GO:0006349: regulation of gene expression by genetic imprinting1.94E-02
207GO:0009638: phototropism1.94E-02
208GO:0035999: tetrahydrofolate interconversion1.94E-02
209GO:0031425: chloroplast RNA processing1.94E-02
210GO:1900426: positive regulation of defense response to bacterium1.94E-02
211GO:0009742: brassinosteroid mediated signaling pathway2.06E-02
212GO:0031627: telomeric loop formation2.16E-02
213GO:0010048: vernalization response2.16E-02
214GO:0006535: cysteine biosynthetic process from serine2.16E-02
215GO:0009641: shade avoidance2.16E-02
216GO:0006298: mismatch repair2.16E-02
217GO:0006949: syncytium formation2.16E-02
218GO:0010015: root morphogenesis2.40E-02
219GO:0006816: calcium ion transport2.40E-02
220GO:0009682: induced systemic resistance2.40E-02
221GO:0071555: cell wall organization2.59E-02
222GO:0008361: regulation of cell size2.64E-02
223GO:0015706: nitrate transport2.64E-02
224GO:0016024: CDP-diacylglycerol biosynthetic process2.64E-02
225GO:0009058: biosynthetic process2.71E-02
226GO:0080167: response to karrikin2.77E-02
227GO:0010588: cotyledon vascular tissue pattern formation2.90E-02
228GO:0006006: glucose metabolic process2.90E-02
229GO:0010102: lateral root morphogenesis2.90E-02
230GO:0009785: blue light signaling pathway2.90E-02
231GO:0009691: cytokinin biosynthetic process2.90E-02
232GO:0030154: cell differentiation3.08E-02
233GO:0010207: photosystem II assembly3.16E-02
234GO:0006541: glutamine metabolic process3.16E-02
235GO:0010223: secondary shoot formation3.16E-02
236GO:0080188: RNA-directed DNA methylation3.43E-02
237GO:0010167: response to nitrate3.43E-02
238GO:0070588: calcium ion transmembrane transport3.43E-02
239GO:0006071: glycerol metabolic process3.70E-02
240GO:0006833: water transport3.70E-02
241GO:0016310: phosphorylation3.73E-02
242GO:0009640: photomorphogenesis3.93E-02
243GO:0019344: cysteine biosynthetic process3.98E-02
244GO:0080147: root hair cell development3.98E-02
245GO:0051017: actin filament bundle assembly3.98E-02
246GO:0000027: ribosomal large subunit assembly3.98E-02
247GO:0051302: regulation of cell division4.27E-02
248GO:0006418: tRNA aminoacylation for protein translation4.27E-02
249GO:0006825: copper ion transport4.27E-02
250GO:0007166: cell surface receptor signaling pathway4.47E-02
251GO:0003333: amino acid transmembrane transport4.57E-02
252GO:0010431: seed maturation4.57E-02
253GO:0016042: lipid catabolic process4.67E-02
254GO:0009617: response to bacterium4.71E-02
255GO:0031347: regulation of defense response4.75E-02
256GO:0009751: response to salicylic acid4.77E-02
257GO:0031348: negative regulation of defense response4.87E-02
258GO:0009664: plant-type cell wall organization4.92E-02
RankGO TermAdjusted P value
1GO:0042834: peptidoglycan binding0.00E+00
2GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
3GO:0004674: protein serine/threonine kinase activity4.91E-06
4GO:0004519: endonuclease activity3.59E-05
5GO:0032549: ribonucleoside binding6.86E-05
6GO:0003723: RNA binding1.07E-04
7GO:0003727: single-stranded RNA binding1.30E-04
8GO:0009672: auxin:proton symporter activity1.51E-04
9GO:0010329: auxin efflux transmembrane transporter activity3.41E-04
10GO:0016301: kinase activity6.95E-04
11GO:0016274: protein-arginine N-methyltransferase activity7.03E-04
12GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.03E-04
13GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity7.03E-04
14GO:0004008: copper-exporting ATPase activity7.03E-04
15GO:0004830: tryptophan-tRNA ligase activity7.03E-04
16GO:0004071: aspartate-ammonia ligase activity7.03E-04
17GO:0052381: tRNA dimethylallyltransferase activity7.03E-04
18GO:0004016: adenylate cyclase activity7.03E-04
19GO:0004672: protein kinase activity7.27E-04
20GO:0004650: polygalacturonase activity8.68E-04
21GO:0008173: RNA methyltransferase activity1.28E-03
22GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.52E-03
23GO:0008805: carbon-monoxide oxygenase activity1.52E-03
24GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.52E-03
25GO:0015929: hexosaminidase activity1.52E-03
26GO:0004563: beta-N-acetylhexosaminidase activity1.52E-03
27GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.52E-03
28GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.52E-03
29GO:0009884: cytokinin receptor activity1.52E-03
30GO:0035241: protein-arginine omega-N monomethyltransferase activity1.52E-03
31GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.52E-03
32GO:0005089: Rho guanyl-nucleotide exchange factor activity2.47E-03
33GO:0001054: RNA polymerase I activity2.47E-03
34GO:0004180: carboxypeptidase activity2.50E-03
35GO:0017150: tRNA dihydrouridine synthase activity2.50E-03
36GO:0045548: phenylalanine ammonia-lyase activity2.50E-03
37GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity2.50E-03
38GO:0042781: 3'-tRNA processing endoribonuclease activity2.50E-03
39GO:0016805: dipeptidase activity2.50E-03
40GO:0005034: osmosensor activity2.50E-03
41GO:0008469: histone-arginine N-methyltransferase activity2.50E-03
42GO:0009982: pseudouridine synthase activity3.23E-03
43GO:0005524: ATP binding3.33E-03
44GO:0001872: (1->3)-beta-D-glucan binding3.64E-03
45GO:0035197: siRNA binding3.64E-03
46GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.65E-03
47GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.86E-03
48GO:0004345: glucose-6-phosphate dehydrogenase activity4.92E-03
49GO:0005253: anion channel activity4.92E-03
50GO:0010385: double-stranded methylated DNA binding4.92E-03
51GO:0019199: transmembrane receptor protein kinase activity4.92E-03
52GO:0046556: alpha-L-arabinofuranosidase activity4.92E-03
53GO:0016279: protein-lysine N-methyltransferase activity4.92E-03
54GO:0004845: uracil phosphoribosyltransferase activity4.92E-03
55GO:0008168: methyltransferase activity5.43E-03
56GO:0033612: receptor serine/threonine kinase binding6.18E-03
57GO:0004372: glycine hydroxymethyltransferase activity6.33E-03
58GO:0008725: DNA-3-methyladenine glycosylase activity6.33E-03
59GO:0019843: rRNA binding6.35E-03
60GO:0004605: phosphatidate cytidylyltransferase activity7.86E-03
61GO:1990714: hydroxyproline O-galactosyltransferase activity7.86E-03
62GO:0031177: phosphopantetheine binding7.86E-03
63GO:0016208: AMP binding7.86E-03
64GO:0008519: ammonium transmembrane transporter activity7.86E-03
65GO:0005247: voltage-gated chloride channel activity7.86E-03
66GO:0030983: mismatched DNA binding7.86E-03
67GO:0004124: cysteine synthase activity9.51E-03
68GO:0008195: phosphatidate phosphatase activity9.51E-03
69GO:0004849: uridine kinase activity9.51E-03
70GO:0000035: acyl binding9.51E-03
71GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity9.51E-03
72GO:0016832: aldehyde-lyase activity9.51E-03
73GO:0004656: procollagen-proline 4-dioxygenase activity9.51E-03
74GO:0019900: kinase binding9.51E-03
75GO:0001085: RNA polymerase II transcription factor binding1.02E-02
76GO:0003735: structural constituent of ribosome1.02E-02
77GO:0008017: microtubule binding1.11E-02
78GO:0019901: protein kinase binding1.18E-02
79GO:0003690: double-stranded DNA binding1.27E-02
80GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.32E-02
81GO:0005215: transporter activity1.33E-02
82GO:0003777: microtubule motor activity1.39E-02
83GO:0000156: phosphorelay response regulator activity1.44E-02
84GO:0005375: copper ion transmembrane transporter activity1.51E-02
85GO:0008889: glycerophosphodiester phosphodiesterase activity1.72E-02
86GO:0016788: hydrolase activity, acting on ester bonds2.07E-02
87GO:0004673: protein histidine kinase activity2.16E-02
88GO:0008171: O-methyltransferase activity2.16E-02
89GO:0003691: double-stranded telomeric DNA binding2.40E-02
90GO:0004521: endoribonuclease activity2.64E-02
91GO:0004222: metalloendopeptidase activity2.65E-02
92GO:0005515: protein binding2.73E-02
93GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.78E-02
94GO:0016829: lyase activity2.80E-02
95GO:0003725: double-stranded RNA binding2.90E-02
96GO:0004022: alcohol dehydrogenase (NAD) activity2.90E-02
97GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.90E-02
98GO:0031072: heat shock protein binding2.90E-02
99GO:0000155: phosphorelay sensor kinase activity2.90E-02
100GO:0005262: calcium channel activity2.90E-02
101GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.99E-02
102GO:0003697: single-stranded DNA binding3.05E-02
103GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.05E-02
104GO:0052689: carboxylic ester hydrolase activity3.20E-02
105GO:0004712: protein serine/threonine/tyrosine kinase activity3.33E-02
106GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.48E-02
107GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.60E-02
108GO:0003677: DNA binding3.69E-02
109GO:0031418: L-ascorbic acid binding3.98E-02
110GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding4.20E-02
111GO:0043621: protein self-association4.25E-02
112GO:0043424: protein histidine kinase binding4.27E-02
113GO:0015079: potassium ion transmembrane transporter activity4.27E-02
114GO:0005345: purine nucleobase transmembrane transporter activity4.27E-02
115GO:0035251: UDP-glucosyltransferase activity4.57E-02
116GO:0004176: ATP-dependent peptidase activity4.57E-02
<
Gene type



Gene DE type