Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G19180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
2GO:0007638: mechanosensory behavior0.00E+00
3GO:0035884: arabinan biosynthetic process0.00E+00
4GO:0097164: ammonium ion metabolic process0.00E+00
5GO:0045184: establishment of protein localization0.00E+00
6GO:0006399: tRNA metabolic process0.00E+00
7GO:0015843: methylammonium transport0.00E+00
8GO:0031222: arabinan catabolic process0.00E+00
9GO:0070979: protein K11-linked ubiquitination0.00E+00
10GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
11GO:0009606: tropism0.00E+00
12GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
13GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
14GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
15GO:1903224: regulation of endodermal cell differentiation0.00E+00
16GO:0090071: negative regulation of ribosome biogenesis0.00E+00
17GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
18GO:0009734: auxin-activated signaling pathway1.66E-10
19GO:0046620: regulation of organ growth2.26E-10
20GO:0009658: chloroplast organization3.34E-08
21GO:0009733: response to auxin3.70E-07
22GO:0040008: regulation of growth3.30E-06
23GO:0009926: auxin polar transport5.08E-06
24GO:0042793: transcription from plastid promoter1.97E-05
25GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.34E-05
26GO:0009657: plastid organization9.99E-05
27GO:0000373: Group II intron splicing1.33E-04
28GO:0009742: brassinosteroid mediated signaling pathway2.92E-04
29GO:0032502: developmental process3.66E-04
30GO:0016123: xanthophyll biosynthetic process3.96E-04
31GO:0009828: plant-type cell wall loosening4.49E-04
32GO:0009959: negative gravitropism5.50E-04
33GO:0005992: trehalose biosynthetic process6.93E-04
34GO:2000067: regulation of root morphogenesis7.28E-04
35GO:0010480: microsporocyte differentiation7.46E-04
36GO:0090558: plant epidermis development7.46E-04
37GO:2000021: regulation of ion homeostasis7.46E-04
38GO:0035987: endodermal cell differentiation7.46E-04
39GO:0043609: regulation of carbon utilization7.46E-04
40GO:0006436: tryptophanyl-tRNA aminoacylation7.46E-04
41GO:0000066: mitochondrial ornithine transport7.46E-04
42GO:0050801: ion homeostasis7.46E-04
43GO:0006177: GMP biosynthetic process7.46E-04
44GO:0034757: negative regulation of iron ion transport7.46E-04
45GO:0070509: calcium ion import7.46E-04
46GO:0042659: regulation of cell fate specification7.46E-04
47GO:0043266: regulation of potassium ion transport7.46E-04
48GO:0000160: phosphorelay signal transduction system9.64E-04
49GO:0007275: multicellular organism development1.02E-03
50GO:0042255: ribosome assembly1.15E-03
51GO:0007389: pattern specification process1.40E-03
52GO:0006002: fructose 6-phosphate metabolic process1.40E-03
53GO:0018026: peptidyl-lysine monomethylation1.61E-03
54GO:1902326: positive regulation of chlorophyll biosynthetic process1.61E-03
55GO:0071497: cellular response to freezing1.61E-03
56GO:0042325: regulation of phosphorylation1.61E-03
57GO:0009220: pyrimidine ribonucleotide biosynthetic process1.61E-03
58GO:1904143: positive regulation of carotenoid biosynthetic process1.61E-03
59GO:0006529: asparagine biosynthetic process1.61E-03
60GO:2000123: positive regulation of stomatal complex development1.61E-03
61GO:0070981: L-asparagine biosynthetic process1.61E-03
62GO:0010271: regulation of chlorophyll catabolic process1.61E-03
63GO:0060359: response to ammonium ion1.61E-03
64GO:0009646: response to absence of light1.83E-03
65GO:0009638: phototropism2.00E-03
66GO:0006949: syncytium formation2.34E-03
67GO:0010583: response to cyclopentenone2.39E-03
68GO:0006000: fructose metabolic process2.67E-03
69GO:0006760: folic acid-containing compound metabolic process2.67E-03
70GO:0043157: response to cation stress2.67E-03
71GO:0010447: response to acidic pH2.67E-03
72GO:0080117: secondary growth2.67E-03
73GO:0006954: inflammatory response2.67E-03
74GO:0051127: positive regulation of actin nucleation2.67E-03
75GO:0090708: specification of plant organ axis polarity2.67E-03
76GO:0031145: anaphase-promoting complex-dependent catabolic process2.67E-03
77GO:0019419: sulfate reduction2.67E-03
78GO:0010015: root morphogenesis2.71E-03
79GO:0010252: auxin homeostasis2.81E-03
80GO:0009736: cytokinin-activated signaling pathway3.01E-03
81GO:0010027: thylakoid membrane organization3.53E-03
82GO:0009767: photosynthetic electron transport chain3.54E-03
83GO:0031048: chromatin silencing by small RNA3.88E-03
84GO:2001141: regulation of RNA biosynthetic process3.88E-03
85GO:0016556: mRNA modification3.88E-03
86GO:1902476: chloride transmembrane transport3.88E-03
87GO:0007231: osmosensory signaling pathway3.88E-03
88GO:0030071: regulation of mitotic metaphase/anaphase transition3.88E-03
89GO:0009226: nucleotide-sugar biosynthetic process3.88E-03
90GO:0051639: actin filament network formation3.88E-03
91GO:0010239: chloroplast mRNA processing3.88E-03
92GO:0015696: ammonium transport3.88E-03
93GO:0046739: transport of virus in multicellular host3.88E-03
94GO:0044211: CTP salvage3.88E-03
95GO:0032981: mitochondrial respiratory chain complex I assembly3.88E-03
96GO:2000904: regulation of starch metabolic process3.88E-03
97GO:0019048: modulation by virus of host morphology or physiology3.88E-03
98GO:0010020: chloroplast fission4.00E-03
99GO:0010207: photosystem II assembly4.00E-03
100GO:0008380: RNA splicing4.32E-03
101GO:0070588: calcium ion transmembrane transport4.49E-03
102GO:0071555: cell wall organization5.22E-03
103GO:0044205: 'de novo' UMP biosynthetic process5.24E-03
104GO:0051567: histone H3-K9 methylation5.24E-03
105GO:0006346: methylation-dependent chromatin silencing5.24E-03
106GO:0044206: UMP salvage5.24E-03
107GO:0009165: nucleotide biosynthetic process5.24E-03
108GO:1901141: regulation of lignin biosynthetic process5.24E-03
109GO:0015846: polyamine transport5.24E-03
110GO:0030104: water homeostasis5.24E-03
111GO:0033500: carbohydrate homeostasis5.24E-03
112GO:0051764: actin crosslink formation5.24E-03
113GO:2000038: regulation of stomatal complex development5.24E-03
114GO:0046656: folic acid biosynthetic process5.24E-03
115GO:0072488: ammonium transmembrane transport5.24E-03
116GO:0006468: protein phosphorylation6.13E-03
117GO:0009826: unidimensional cell growth6.38E-03
118GO:0009904: chloroplast accumulation movement6.75E-03
119GO:0006544: glycine metabolic process6.75E-03
120GO:0009107: lipoate biosynthetic process6.75E-03
121GO:1902183: regulation of shoot apical meristem development6.75E-03
122GO:0016131: brassinosteroid metabolic process6.75E-03
123GO:0010438: cellular response to sulfur starvation6.75E-03
124GO:0010158: abaxial cell fate specification6.75E-03
125GO:0048578: positive regulation of long-day photoperiodism, flowering6.75E-03
126GO:0032876: negative regulation of DNA endoreduplication6.75E-03
127GO:0010375: stomatal complex patterning6.75E-03
128GO:0006306: DNA methylation6.78E-03
129GO:0009416: response to light stimulus7.08E-03
130GO:0006839: mitochondrial transport7.97E-03
131GO:0010082: regulation of root meristem growth8.12E-03
132GO:0045962: positive regulation of development, heterochronic8.39E-03
133GO:0010315: auxin efflux8.39E-03
134GO:0016458: gene silencing8.39E-03
135GO:0006206: pyrimidine nucleobase metabolic process8.39E-03
136GO:0018258: protein O-linked glycosylation via hydroxyproline8.39E-03
137GO:0006563: L-serine metabolic process8.39E-03
138GO:0009228: thiamine biosynthetic process8.39E-03
139GO:0010405: arabinogalactan protein metabolic process8.39E-03
140GO:0006655: phosphatidylglycerol biosynthetic process8.39E-03
141GO:0006139: nucleobase-containing compound metabolic process8.39E-03
142GO:0048831: regulation of shoot system development8.39E-03
143GO:0009117: nucleotide metabolic process8.39E-03
144GO:0048509: regulation of meristem development1.01E-02
145GO:0046654: tetrahydrofolate biosynthetic process1.01E-02
146GO:0009903: chloroplast avoidance movement1.01E-02
147GO:0030488: tRNA methylation1.01E-02
148GO:1901259: chloroplast rRNA processing1.01E-02
149GO:0080086: stamen filament development1.01E-02
150GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.01E-02
151GO:0042372: phylloquinone biosynthetic process1.01E-02
152GO:0071470: cellular response to osmotic stress1.01E-02
153GO:0017148: negative regulation of translation1.01E-02
154GO:0009942: longitudinal axis specification1.01E-02
155GO:0010087: phloem or xylem histogenesis1.04E-02
156GO:0009741: response to brassinosteroid1.12E-02
157GO:0007623: circadian rhythm1.19E-02
158GO:0010050: vegetative phase change1.20E-02
159GO:0048437: floral organ development1.20E-02
160GO:0006400: tRNA modification1.20E-02
161GO:0030307: positive regulation of cell growth1.20E-02
162GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.20E-02
163GO:0010161: red light signaling pathway1.20E-02
164GO:0009610: response to symbiotic fungus1.20E-02
165GO:0006821: chloride transport1.20E-02
166GO:0048528: post-embryonic root development1.20E-02
167GO:0007050: cell cycle arrest1.20E-02
168GO:0009451: RNA modification1.24E-02
169GO:0009664: plant-type cell wall organization1.25E-02
170GO:0009704: de-etiolation1.40E-02
171GO:0032875: regulation of DNA endoreduplication1.40E-02
172GO:0006353: DNA-templated transcription, termination1.40E-02
173GO:0048766: root hair initiation1.40E-02
174GO:0070413: trehalose metabolism in response to stress1.40E-02
175GO:0055075: potassium ion homeostasis1.40E-02
176GO:0010439: regulation of glucosinolate biosynthetic process1.40E-02
177GO:0001522: pseudouridine synthesis1.40E-02
178GO:0048564: photosystem I assembly1.40E-02
179GO:0009850: auxin metabolic process1.40E-02
180GO:0009630: gravitropism1.49E-02
181GO:0006526: arginine biosynthetic process1.62E-02
182GO:0010497: plasmodesmata-mediated intercellular transport1.62E-02
183GO:0010099: regulation of photomorphogenesis1.62E-02
184GO:0071482: cellular response to light stimulus1.62E-02
185GO:0009827: plant-type cell wall modification1.62E-02
186GO:0010100: negative regulation of photomorphogenesis1.62E-02
187GO:0006783: heme biosynthetic process1.84E-02
188GO:0000902: cell morphogenesis1.84E-02
189GO:2000024: regulation of leaf development1.84E-02
190GO:0009051: pentose-phosphate shunt, oxidative branch1.84E-02
191GO:0006098: pentose-phosphate shunt1.84E-02
192GO:0051607: defense response to virus1.91E-02
193GO:0009740: gibberellic acid mediated signaling pathway1.99E-02
194GO:0031425: chloroplast RNA processing2.07E-02
195GO:0042761: very long-chain fatty acid biosynthetic process2.07E-02
196GO:2000280: regulation of root development2.07E-02
197GO:0035999: tetrahydrofolate interconversion2.07E-02
198GO:0010029: regulation of seed germination2.14E-02
199GO:0006974: cellular response to DNA damage stimulus2.26E-02
200GO:0030422: production of siRNA involved in RNA interference2.31E-02
201GO:0045036: protein targeting to chloroplast2.31E-02
202GO:0009641: shade avoidance2.31E-02
203GO:0006259: DNA metabolic process2.31E-02
204GO:0009299: mRNA transcription2.31E-02
205GO:0000103: sulfate assimilation2.31E-02
206GO:0010411: xyloglucan metabolic process2.38E-02
207GO:1903507: negative regulation of nucleic acid-templated transcription2.57E-02
208GO:0006352: DNA-templated transcription, initiation2.57E-02
209GO:0009773: photosynthetic electron transport in photosystem I2.57E-02
210GO:0009682: induced systemic resistance2.57E-02
211GO:0048229: gametophyte development2.57E-02
212GO:0006265: DNA topological change2.57E-02
213GO:0006816: calcium ion transport2.57E-02
214GO:0016024: CDP-diacylglycerol biosynthetic process2.83E-02
215GO:0045037: protein import into chloroplast stroma2.83E-02
216GO:0010582: floral meristem determinacy2.83E-02
217GO:0006006: glucose metabolic process3.10E-02
218GO:0009785: blue light signaling pathway3.10E-02
219GO:0030036: actin cytoskeleton organization3.10E-02
220GO:0010075: regulation of meristem growth3.10E-02
221GO:0009725: response to hormone3.10E-02
222GO:0006094: gluconeogenesis3.10E-02
223GO:0010628: positive regulation of gene expression3.10E-02
224GO:2000012: regulation of auxin polar transport3.10E-02
225GO:0080167: response to karrikin3.17E-02
226GO:0009637: response to blue light3.35E-02
227GO:0006541: glutamine metabolic process3.37E-02
228GO:0009934: regulation of meristem structural organization3.37E-02
229GO:0010143: cutin biosynthetic process3.37E-02
230GO:0034599: cellular response to oxidative stress3.50E-02
231GO:0090351: seedling development3.66E-02
232GO:0010030: positive regulation of seed germination3.66E-02
233GO:0010039: response to iron ion3.66E-02
234GO:0006071: glycerol metabolic process3.95E-02
235GO:0006833: water transport3.95E-02
236GO:0010025: wax biosynthetic process3.95E-02
237GO:0051017: actin filament bundle assembly4.26E-02
238GO:0000027: ribosomal large subunit assembly4.26E-02
239GO:0030150: protein import into mitochondrial matrix4.26E-02
240GO:0010187: negative regulation of seed germination4.26E-02
241GO:0019344: cysteine biosynthetic process4.26E-02
242GO:0009944: polarity specification of adaxial/abaxial axis4.26E-02
243GO:0009116: nucleoside metabolic process4.26E-02
244GO:0010114: response to red light4.31E-02
245GO:0009735: response to cytokinin4.37E-02
246GO:0042546: cell wall biogenesis4.48E-02
247GO:0006825: copper ion transport4.57E-02
248GO:0051302: regulation of cell division4.57E-02
249GO:0019953: sexual reproduction4.57E-02
250GO:0006418: tRNA aminoacylation for protein translation4.57E-02
251GO:0016310: phosphorylation4.60E-02
252GO:0009965: leaf morphogenesis4.83E-02
253GO:0009739: response to gibberellin4.87E-02
254GO:0016998: cell wall macromolecule catabolic process4.88E-02
255GO:0007166: cell surface receptor signaling pathway5.00E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0004358: glutamate N-acetyltransferase activity0.00E+00
4GO:0019136: deoxynucleoside kinase activity0.00E+00
5GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
6GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
7GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
8GO:0019808: polyamine binding0.00E+00
9GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
10GO:0004805: trehalose-phosphatase activity2.16E-04
11GO:0005089: Rho guanyl-nucleotide exchange factor activity2.66E-04
12GO:0016773: phosphotransferase activity, alcohol group as acceptor3.96E-04
13GO:0005290: L-histidine transmembrane transporter activity7.46E-04
14GO:0004008: copper-exporting ATPase activity7.46E-04
15GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity7.46E-04
16GO:0004071: aspartate-ammonia ligase activity7.46E-04
17GO:0004830: tryptophan-tRNA ligase activity7.46E-04
18GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.46E-04
19GO:0010313: phytochrome binding7.46E-04
20GO:0050139: nicotinate-N-glucosyltransferase activity7.46E-04
21GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.46E-04
22GO:0003727: single-stranded RNA binding1.24E-03
23GO:0000064: L-ornithine transmembrane transporter activity1.61E-03
24GO:0010291: carotene beta-ring hydroxylase activity1.61E-03
25GO:0017118: lipoyltransferase activity1.61E-03
26GO:0009884: cytokinin receptor activity1.61E-03
27GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.61E-03
28GO:0043425: bHLH transcription factor binding1.61E-03
29GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.61E-03
30GO:0016415: octanoyltransferase activity1.61E-03
31GO:0003938: IMP dehydrogenase activity1.61E-03
32GO:0009973: adenylyl-sulfate reductase activity1.61E-03
33GO:0102083: 7,8-dihydromonapterin aldolase activity1.61E-03
34GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.61E-03
35GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.61E-03
36GO:0004150: dihydroneopterin aldolase activity1.61E-03
37GO:0009672: auxin:proton symporter activity2.00E-03
38GO:0000156: phosphorelay response regulator activity2.59E-03
39GO:0004557: alpha-galactosidase activity2.67E-03
40GO:0005034: osmosensor activity2.67E-03
41GO:0052692: raffinose alpha-galactosidase activity2.67E-03
42GO:0046524: sucrose-phosphate synthase activity2.67E-03
43GO:0070330: aromatase activity2.67E-03
44GO:0052722: fatty acid in-chain hydroxylase activity2.67E-03
45GO:0017150: tRNA dihydrouridine synthase activity2.67E-03
46GO:0010329: auxin efflux transmembrane transporter activity3.54E-03
47GO:0005262: calcium channel activity3.54E-03
48GO:0004022: alcohol dehydrogenase (NAD) activity3.54E-03
49GO:0015181: arginine transmembrane transporter activity3.88E-03
50GO:0035197: siRNA binding3.88E-03
51GO:0043023: ribosomal large subunit binding3.88E-03
52GO:0001872: (1->3)-beta-D-glucan binding3.88E-03
53GO:0015189: L-lysine transmembrane transporter activity3.88E-03
54GO:0035529: NADH pyrophosphatase activity3.88E-03
55GO:0046556: alpha-L-arabinofuranosidase activity5.24E-03
56GO:0016279: protein-lysine N-methyltransferase activity5.24E-03
57GO:0001053: plastid sigma factor activity5.24E-03
58GO:0004845: uracil phosphoribosyltransferase activity5.24E-03
59GO:0004345: glucose-6-phosphate dehydrogenase activity5.24E-03
60GO:0016987: sigma factor activity5.24E-03
61GO:0005253: anion channel activity5.24E-03
62GO:0004372: glycine hydroxymethyltransferase activity6.75E-03
63GO:0018685: alkane 1-monooxygenase activity6.75E-03
64GO:0019843: rRNA binding7.31E-03
65GO:0008519: ammonium transmembrane transporter activity8.39E-03
66GO:0005247: voltage-gated chloride channel activity8.39E-03
67GO:2001070: starch binding8.39E-03
68GO:0004605: phosphatidate cytidylyltransferase activity8.39E-03
69GO:1990714: hydroxyproline O-galactosyltransferase activity8.39E-03
70GO:0004332: fructose-bisphosphate aldolase activity8.39E-03
71GO:0016208: AMP binding8.39E-03
72GO:0016462: pyrophosphatase activity8.39E-03
73GO:0004674: protein serine/threonine kinase activity9.57E-03
74GO:0019900: kinase binding1.01E-02
75GO:0008195: phosphatidate phosphatase activity1.01E-02
76GO:0004849: uridine kinase activity1.01E-02
77GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.01E-02
78GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.07E-02
79GO:0008536: Ran GTPase binding1.12E-02
80GO:0003872: 6-phosphofructokinase activity1.20E-02
81GO:0004672: protein kinase activity1.37E-02
82GO:0016762: xyloglucan:xyloglucosyl transferase activity1.39E-02
83GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.59E-02
84GO:0008173: RNA methyltransferase activity1.62E-02
85GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.62E-02
86GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity1.62E-02
87GO:0005375: copper ion transmembrane transporter activity1.62E-02
88GO:0042802: identical protein binding1.72E-02
89GO:0008889: glycerophosphodiester phosphodiesterase activity1.84E-02
90GO:0003723: RNA binding2.23E-02
91GO:0004519: endonuclease activity2.25E-02
92GO:0004673: protein histidine kinase activity2.31E-02
93GO:0016798: hydrolase activity, acting on glycosyl bonds2.38E-02
94GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.64E-02
95GO:0004521: endoribonuclease activity2.83E-02
96GO:0000976: transcription regulatory region sequence-specific DNA binding2.83E-02
97GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.05E-02
98GO:0015266: protein channel activity3.10E-02
99GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.10E-02
100GO:0004089: carbonate dehydratase activity3.10E-02
101GO:0031072: heat shock protein binding3.10E-02
102GO:0000155: phosphorelay sensor kinase activity3.10E-02
103GO:0019888: protein phosphatase regulator activity3.10E-02
104GO:0009982: pseudouridine synthase activity3.10E-02
105GO:0016829: lyase activity3.14E-02
106GO:0016301: kinase activity3.31E-02
107GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.37E-02
108GO:0003714: transcription corepressor activity4.26E-02
109GO:0004871: signal transducer activity4.40E-02
110GO:0005515: protein binding4.51E-02
111GO:0043424: protein histidine kinase binding4.57E-02
112GO:0005345: purine nucleobase transmembrane transporter activity4.57E-02
113GO:0043621: protein self-association4.65E-02
114GO:0004707: MAP kinase activity4.88E-02
115GO:0019706: protein-cysteine S-palmitoyltransferase activity4.88E-02
116GO:0008408: 3'-5' exonuclease activity4.88E-02
117GO:0004176: ATP-dependent peptidase activity4.88E-02
118GO:0033612: receptor serine/threonine kinase binding4.88E-02
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Gene type



Gene DE type