Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G18680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045014: negative regulation of transcription by glucose0.00E+00
2GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
3GO:0090627: plant epidermal cell differentiation0.00E+00
4GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
5GO:0009606: tropism0.00E+00
6GO:0090322: regulation of superoxide metabolic process0.00E+00
7GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
8GO:1903224: regulation of endodermal cell differentiation0.00E+00
9GO:0080127: fruit septum development0.00E+00
10GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
11GO:0045184: establishment of protein localization0.00E+00
12GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0019988: charged-tRNA amino acid modification0.00E+00
14GO:0090615: mitochondrial mRNA processing0.00E+00
15GO:0000492: box C/D snoRNP assembly0.00E+00
16GO:0042794: rRNA transcription from plastid promoter0.00E+00
17GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
18GO:0042793: transcription from plastid promoter1.40E-07
19GO:0009658: chloroplast organization8.48E-06
20GO:0009734: auxin-activated signaling pathway5.20E-05
21GO:0006518: peptide metabolic process5.70E-05
22GO:0007389: pattern specification process6.87E-05
23GO:0042127: regulation of cell proliferation9.76E-05
24GO:0009793: embryo development ending in seed dormancy2.94E-04
25GO:0048497: maintenance of floral organ identity3.08E-04
26GO:0006364: rRNA processing4.06E-04
27GO:0009913: epidermal cell differentiation4.30E-04
28GO:0009942: longitudinal axis specification5.71E-04
29GO:1901259: chloroplast rRNA processing5.71E-04
30GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.33E-04
31GO:1905039: carboxylic acid transmembrane transport6.33E-04
32GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.33E-04
33GO:1905200: gibberellic acid transmembrane transport6.33E-04
34GO:0080112: seed growth6.33E-04
35GO:0090558: plant epidermis development6.33E-04
36GO:0010063: positive regulation of trichoblast fate specification6.33E-04
37GO:1903866: palisade mesophyll development6.33E-04
38GO:0033206: meiotic cytokinesis6.33E-04
39GO:0035987: endodermal cell differentiation6.33E-04
40GO:0006436: tryptophanyl-tRNA aminoacylation6.33E-04
41GO:0034757: negative regulation of iron ion transport6.33E-04
42GO:0042659: regulation of cell fate specification6.33E-04
43GO:0006401: RNA catabolic process7.30E-04
44GO:0042255: ribosome assembly9.07E-04
45GO:0006353: DNA-templated transcription, termination9.07E-04
46GO:0008033: tRNA processing1.11E-03
47GO:0010305: leaf vascular tissue pattern formation1.22E-03
48GO:0000373: Group II intron splicing1.32E-03
49GO:1901529: positive regulation of anion channel activity1.36E-03
50GO:0009967: positive regulation of signal transduction1.36E-03
51GO:0048255: mRNA stabilization1.36E-03
52GO:0019374: galactolipid metabolic process1.36E-03
53GO:1902326: positive regulation of chlorophyll biosynthetic process1.36E-03
54GO:0010569: regulation of double-strand break repair via homologous recombination1.36E-03
55GO:0010271: regulation of chlorophyll catabolic process1.36E-03
56GO:0010541: acropetal auxin transport1.36E-03
57GO:0018026: peptidyl-lysine monomethylation1.36E-03
58GO:0048731: system development1.36E-03
59GO:0009662: etioplast organization1.36E-03
60GO:1900033: negative regulation of trichome patterning1.36E-03
61GO:2000071: regulation of defense response by callose deposition1.36E-03
62GO:1904143: positive regulation of carotenoid biosynthetic process1.36E-03
63GO:0080009: mRNA methylation1.36E-03
64GO:2000123: positive regulation of stomatal complex development1.36E-03
65GO:0009733: response to auxin1.38E-03
66GO:1900865: chloroplast RNA modification1.56E-03
67GO:0080156: mitochondrial mRNA modification1.59E-03
68GO:0010583: response to cyclopentenone1.73E-03
69GO:0006535: cysteine biosynthetic process from serine1.83E-03
70GO:0048829: root cap development1.83E-03
71GO:0006949: syncytium formation1.83E-03
72GO:0040008: regulation of growth1.86E-03
73GO:0009828: plant-type cell wall loosening2.04E-03
74GO:0009451: RNA modification2.11E-03
75GO:0090708: specification of plant organ axis polarity2.25E-03
76GO:0080117: secondary growth2.25E-03
77GO:0044210: 'de novo' CTP biosynthetic process2.25E-03
78GO:0090391: granum assembly2.25E-03
79GO:0042780: tRNA 3'-end processing2.25E-03
80GO:0001578: microtubule bundle formation2.25E-03
81GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.25E-03
82GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.25E-03
83GO:0010588: cotyledon vascular tissue pattern formation2.76E-03
84GO:0048367: shoot system development2.78E-03
85GO:0010540: basipetal auxin transport3.11E-03
86GO:0010306: rhamnogalacturonan II biosynthetic process3.26E-03
87GO:0007276: gamete generation3.26E-03
88GO:0010371: regulation of gibberellin biosynthetic process3.26E-03
89GO:1902476: chloride transmembrane transport3.26E-03
90GO:0010071: root meristem specification3.26E-03
91GO:0009102: biotin biosynthetic process3.26E-03
92GO:0010239: chloroplast mRNA processing3.26E-03
93GO:0080188: RNA-directed DNA methylation3.49E-03
94GO:0048481: plant ovule development3.61E-03
95GO:0019344: cysteine biosynthetic process4.33E-03
96GO:0030104: water homeostasis4.41E-03
97GO:2000038: regulation of stomatal complex development4.41E-03
98GO:0006021: inositol biosynthetic process4.41E-03
99GO:0009956: radial pattern formation4.41E-03
100GO:0006808: regulation of nitrogen utilization4.41E-03
101GO:0006479: protein methylation4.41E-03
102GO:0048629: trichome patterning4.41E-03
103GO:1900864: mitochondrial RNA modification4.41E-03
104GO:0051322: anaphase4.41E-03
105GO:0006865: amino acid transport4.61E-03
106GO:0006418: tRNA aminoacylation for protein translation4.78E-03
107GO:0003333: amino acid transmembrane transport5.26E-03
108GO:0080110: sporopollenin biosynthetic process5.66E-03
109GO:0010375: stomatal complex patterning5.66E-03
110GO:0009247: glycolipid biosynthetic process5.66E-03
111GO:0016120: carotene biosynthetic process5.66E-03
112GO:0016123: xanthophyll biosynthetic process5.66E-03
113GO:2000022: regulation of jasmonic acid mediated signaling pathway5.77E-03
114GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.30E-03
115GO:0071215: cellular response to abscisic acid stimulus6.30E-03
116GO:0009926: auxin polar transport6.77E-03
117GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.79E-03
118GO:0060918: auxin transport7.03E-03
119GO:1902456: regulation of stomatal opening7.03E-03
120GO:0016554: cytidine to uridine editing7.03E-03
121GO:0048831: regulation of shoot system development7.03E-03
122GO:0003006: developmental process involved in reproduction7.03E-03
123GO:0010315: auxin efflux7.03E-03
124GO:0009643: photosynthetic acclimation7.03E-03
125GO:0006014: D-ribose metabolic process7.03E-03
126GO:0009959: negative gravitropism7.03E-03
127GO:0010087: phloem or xylem histogenesis8.05E-03
128GO:0010118: stomatal movement8.05E-03
129GO:0009082: branched-chain amino acid biosynthetic process8.49E-03
130GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.49E-03
131GO:0006458: 'de novo' protein folding8.49E-03
132GO:0042026: protein refolding8.49E-03
133GO:0048509: regulation of meristem development8.49E-03
134GO:2000033: regulation of seed dormancy process8.49E-03
135GO:0009099: valine biosynthetic process8.49E-03
136GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity8.49E-03
137GO:0010310: regulation of hydrogen peroxide metabolic process8.49E-03
138GO:2000067: regulation of root morphogenesis8.49E-03
139GO:0009955: adaxial/abaxial pattern specification8.49E-03
140GO:0009741: response to brassinosteroid8.69E-03
141GO:0009664: plant-type cell wall organization9.06E-03
142GO:0048544: recognition of pollen9.35E-03
143GO:0009736: cytokinin-activated signaling pathway9.92E-03
144GO:0048825: cotyledon development1.00E-02
145GO:0006821: chloride transport1.01E-02
146GO:0048437: floral organ development1.01E-02
147GO:0015937: coenzyme A biosynthetic process1.01E-02
148GO:0010444: guard mother cell differentiation1.01E-02
149GO:0000082: G1/S transition of mitotic cell cycle1.01E-02
150GO:0010103: stomatal complex morphogenesis1.01E-02
151GO:0006955: immune response1.01E-02
152GO:0032502: developmental process1.15E-02
153GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.17E-02
154GO:0006402: mRNA catabolic process1.17E-02
155GO:0009787: regulation of abscisic acid-activated signaling pathway1.17E-02
156GO:0009642: response to light intensity1.17E-02
157GO:0019375: galactolipid biosynthetic process1.17E-02
158GO:0046620: regulation of organ growth1.17E-02
159GO:0048766: root hair initiation1.17E-02
160GO:0010492: maintenance of shoot apical meristem identity1.17E-02
161GO:0055075: potassium ion homeostasis1.17E-02
162GO:0000105: histidine biosynthetic process1.17E-02
163GO:0052543: callose deposition in cell wall1.17E-02
164GO:0009416: response to light stimulus1.20E-02
165GO:0048316: seed development1.28E-02
166GO:0010252: auxin homeostasis1.31E-02
167GO:0019430: removal of superoxide radicals1.35E-02
168GO:0001510: RNA methylation1.35E-02
169GO:0010233: phloem transport1.35E-02
170GO:0010497: plasmodesmata-mediated intercellular transport1.35E-02
171GO:0009097: isoleucine biosynthetic process1.35E-02
172GO:0009657: plastid organization1.35E-02
173GO:0032544: plastid translation1.35E-02
174GO:0048364: root development1.36E-02
175GO:0048507: meristem development1.54E-02
176GO:0048589: developmental growth1.54E-02
177GO:0000902: cell morphogenesis1.54E-02
178GO:0010027: thylakoid membrane organization1.56E-02
179GO:0010029: regulation of seed germination1.66E-02
180GO:0051726: regulation of cell cycle1.68E-02
181GO:0042761: very long-chain fatty acid biosynthetic process1.73E-02
182GO:2000280: regulation of root development1.73E-02
183GO:0006349: regulation of gene expression by genetic imprinting1.73E-02
184GO:0031425: chloroplast RNA processing1.73E-02
185GO:0006355: regulation of transcription, DNA-templated1.89E-02
186GO:0045036: protein targeting to chloroplast1.93E-02
187GO:0016441: posttranscriptional gene silencing1.93E-02
188GO:0010048: vernalization response1.93E-02
189GO:0009682: induced systemic resistance2.14E-02
190GO:1903507: negative regulation of nucleic acid-templated transcription2.14E-02
191GO:0015770: sucrose transport2.14E-02
192GO:0009750: response to fructose2.14E-02
193GO:0016485: protein processing2.14E-02
194GO:0000160: phosphorelay signal transduction system2.15E-02
195GO:0009845: seed germination2.29E-02
196GO:0010152: pollen maturation2.36E-02
197GO:0045037: protein import into chloroplast stroma2.36E-02
198GO:0010582: floral meristem determinacy2.36E-02
199GO:0006790: sulfur compound metabolic process2.36E-02
200GO:0012501: programmed cell death2.36E-02
201GO:0009790: embryo development2.52E-02
202GO:0010102: lateral root morphogenesis2.58E-02
203GO:0009691: cytokinin biosynthetic process2.58E-02
204GO:0009867: jasmonic acid mediated signaling pathway2.60E-02
205GO:0010020: chloroplast fission2.81E-02
206GO:0009933: meristem structural organization2.81E-02
207GO:0009887: animal organ morphogenesis2.81E-02
208GO:0048768: root hair cell tip growth2.81E-02
209GO:0048467: gynoecium development2.81E-02
210GO:0009825: multidimensional cell growth3.05E-02
211GO:0009901: anther dehiscence3.05E-02
212GO:0046854: phosphatidylinositol phosphorylation3.05E-02
213GO:0006636: unsaturated fatty acid biosynthetic process3.30E-02
214GO:0006833: water transport3.30E-02
215GO:0009744: response to sucrose3.35E-02
216GO:0006468: protein phosphorylation3.35E-02
217GO:0080147: root hair cell development3.55E-02
218GO:0009863: salicylic acid mediated signaling pathway3.55E-02
219GO:0010187: negative regulation of seed germination3.55E-02
220GO:2000377: regulation of reactive oxygen species metabolic process3.55E-02
221GO:0009739: response to gibberellin3.57E-02
222GO:0016042: lipid catabolic process3.71E-02
223GO:0010073: meristem maintenance3.81E-02
224GO:0051302: regulation of cell division3.81E-02
225GO:0019953: sexual reproduction3.81E-02
226GO:0051301: cell division3.85E-02
227GO:0008380: RNA splicing3.87E-02
228GO:0031347: regulation of defense response4.05E-02
229GO:0061077: chaperone-mediated protein folding4.07E-02
230GO:0016998: cell wall macromolecule catabolic process4.07E-02
231GO:0015992: proton transport4.07E-02
232GO:0010431: seed maturation4.07E-02
233GO:0006397: mRNA processing4.11E-02
234GO:0030245: cellulose catabolic process4.35E-02
235GO:0010082: regulation of root meristem growth4.62E-02
236GO:0010091: trichome branching4.90E-02
237GO:0048443: stamen development4.90E-02
238GO:0009306: protein secretion4.90E-02
239GO:0010584: pollen exine formation4.90E-02
RankGO TermAdjusted P value
1GO:0008859: exoribonuclease II activity0.00E+00
2GO:0071633: dihydroceramidase activity0.00E+00
3GO:0004141: dethiobiotin synthase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity0.00E+00
6GO:0004401: histidinol-phosphatase activity0.00E+00
7GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
8GO:0052834: inositol monophosphate phosphatase activity0.00E+00
9GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity0.00E+00
10GO:0016763: transferase activity, transferring pentosyl groups0.00E+00
11GO:0003723: RNA binding3.91E-05
12GO:0004519: endonuclease activity1.00E-04
13GO:0004124: cysteine synthase activity5.71E-04
14GO:0004632: phosphopantothenate--cysteine ligase activity6.33E-04
15GO:0042834: peptidoglycan binding6.33E-04
16GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.33E-04
17GO:0016274: protein-arginine N-methyltransferase activity6.33E-04
18GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.33E-04
19GO:0052381: tRNA dimethylallyltransferase activity6.33E-04
20GO:0004830: tryptophan-tRNA ligase activity6.33E-04
21GO:0004160: dihydroxy-acid dehydratase activity6.33E-04
22GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor6.33E-04
23GO:0004654: polyribonucleotide nucleotidyltransferase activity6.33E-04
24GO:0010347: L-galactose-1-phosphate phosphatase activity6.33E-04
25GO:0004016: adenylate cyclase activity6.33E-04
26GO:1905201: gibberellin transmembrane transporter activity6.33E-04
27GO:0004222: metalloendopeptidase activity7.12E-04
28GO:0003727: single-stranded RNA binding9.07E-04
29GO:0008173: RNA methyltransferase activity1.10E-03
30GO:0019843: rRNA binding1.14E-03
31GO:0000774: adenyl-nucleotide exchange factor activity1.36E-03
32GO:0008934: inositol monophosphate 1-phosphatase activity1.36E-03
33GO:0052833: inositol monophosphate 4-phosphatase activity1.36E-03
34GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.36E-03
35GO:0005078: MAP-kinase scaffold activity1.36E-03
36GO:0009884: cytokinin receptor activity1.36E-03
37GO:0042389: omega-3 fatty acid desaturase activity1.36E-03
38GO:0004809: tRNA (guanine-N2-)-methyltransferase activity1.36E-03
39GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.36E-03
40GO:0052832: inositol monophosphate 3-phosphatase activity1.36E-03
41GO:0009672: auxin:proton symporter activity1.56E-03
42GO:0003690: double-stranded DNA binding2.16E-03
43GO:0017150: tRNA dihydrouridine synthase activity2.25E-03
44GO:0042781: 3'-tRNA processing endoribonuclease activity2.25E-03
45GO:0016805: dipeptidase activity2.25E-03
46GO:0005034: osmosensor activity2.25E-03
47GO:0000175: 3'-5'-exoribonuclease activity2.76E-03
48GO:0010329: auxin efflux transmembrane transporter activity2.76E-03
49GO:0009678: hydrogen-translocating pyrophosphatase activity3.26E-03
50GO:0003883: CTP synthase activity3.26E-03
51GO:0001872: (1->3)-beta-D-glucan binding3.26E-03
52GO:0008168: methyltransferase activity4.10E-03
53GO:0010328: auxin influx transmembrane transporter activity4.41E-03
54GO:0005253: anion channel activity4.41E-03
55GO:0004930: G-protein coupled receptor activity4.41E-03
56GO:0016279: protein-lysine N-methyltransferase activity4.41E-03
57GO:0010011: auxin binding4.41E-03
58GO:0016836: hydro-lyase activity4.41E-03
59GO:0004888: transmembrane signaling receptor activity5.66E-03
60GO:0005275: amine transmembrane transporter activity5.66E-03
61GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.66E-03
62GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding6.07E-03
63GO:0030570: pectate lyase activity6.30E-03
64GO:0004784: superoxide dismutase activity7.03E-03
65GO:0005247: voltage-gated chloride channel activity7.03E-03
66GO:0004812: aminoacyl-tRNA ligase activity7.44E-03
67GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.49E-03
68GO:0016832: aldehyde-lyase activity8.49E-03
69GO:0004747: ribokinase activity8.49E-03
70GO:0019900: kinase binding8.49E-03
71GO:0001085: RNA polymerase II transcription factor binding8.69E-03
72GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity8.69E-03
73GO:0043565: sequence-specific DNA binding9.71E-03
74GO:0019901: protein kinase binding1.00E-02
75GO:0004427: inorganic diphosphatase activity1.01E-02
76GO:0030515: snoRNA binding1.01E-02
77GO:0015171: amino acid transmembrane transporter activity1.13E-02
78GO:0008865: fructokinase activity1.17E-02
79GO:0003700: transcription factor activity, sequence-specific DNA binding1.24E-02
80GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.35E-02
81GO:0003724: RNA helicase activity1.35E-02
82GO:0008237: metallopeptidase activity1.39E-02
83GO:0000989: transcription factor activity, transcription factor binding1.54E-02
84GO:0051082: unfolded protein binding1.56E-02
85GO:0016788: hydrolase activity, acting on ester bonds1.63E-02
86GO:0004673: protein histidine kinase activity1.93E-02
87GO:0008515: sucrose transmembrane transporter activity2.14E-02
88GO:0044183: protein binding involved in protein folding2.14E-02
89GO:0008289: lipid binding2.22E-02
90GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.37E-02
91GO:0052689: carboxylic ester hydrolase activity2.53E-02
92GO:0003725: double-stranded RNA binding2.58E-02
93GO:0004022: alcohol dehydrogenase (NAD) activity2.58E-02
94GO:0031072: heat shock protein binding2.58E-02
95GO:0000155: phosphorelay sensor kinase activity2.58E-02
96GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.81E-02
97GO:0051539: 4 iron, 4 sulfur cluster binding2.96E-02
98GO:0051119: sugar transmembrane transporter activity3.05E-02
99GO:0042803: protein homodimerization activity3.05E-02
100GO:0004190: aspartic-type endopeptidase activity3.05E-02
101GO:0005515: protein binding3.51E-02
102GO:0003714: transcription corepressor activity3.55E-02
103GO:0015293: symporter activity3.76E-02
104GO:0043424: protein histidine kinase binding3.81E-02
105GO:0051087: chaperone binding3.81E-02
106GO:0005524: ATP binding4.01E-02
107GO:0004540: ribonuclease activity4.07E-02
108GO:0008408: 3'-5' exonuclease activity4.07E-02
109GO:0008810: cellulase activity4.62E-02
110GO:0003777: microtubule motor activity4.98E-02
<
Gene type



Gene DE type