GO Enrichment Analysis of Co-expressed Genes with
AT3G18090
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050776: regulation of immune response | 0.00E+00 |
| 2 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 3 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 4 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.96E-07 |
| 5 | GO:0030422: production of siRNA involved in RNA interference | 5.49E-05 |
| 6 | GO:0006436: tryptophanyl-tRNA aminoacylation | 5.64E-05 |
| 7 | GO:0034970: histone H3-R2 methylation | 5.64E-05 |
| 8 | GO:0034972: histone H3-R26 methylation | 5.64E-05 |
| 9 | GO:0010480: microsporocyte differentiation | 5.64E-05 |
| 10 | GO:0034971: histone H3-R17 methylation | 5.64E-05 |
| 11 | GO:0048229: gametophyte development | 6.52E-05 |
| 12 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 1.37E-04 |
| 13 | GO:0010254: nectary development | 1.37E-04 |
| 14 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.37E-04 |
| 15 | GO:0010434: bract formation | 1.37E-04 |
| 16 | GO:0048439: flower morphogenesis | 1.37E-04 |
| 17 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.37E-04 |
| 18 | GO:0009786: regulation of asymmetric cell division | 1.37E-04 |
| 19 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.46E-04 |
| 20 | GO:0006306: DNA methylation | 1.80E-04 |
| 21 | GO:0009954: proximal/distal pattern formation | 2.34E-04 |
| 22 | GO:0071705: nitrogen compound transport | 2.34E-04 |
| 23 | GO:1902476: chloride transmembrane transport | 3.41E-04 |
| 24 | GO:0051513: regulation of monopolar cell growth | 3.41E-04 |
| 25 | GO:0019048: modulation by virus of host morphology or physiology | 3.41E-04 |
| 26 | GO:0031048: chromatin silencing by small RNA | 3.41E-04 |
| 27 | GO:0009558: embryo sac cellularization | 3.41E-04 |
| 28 | GO:0071249: cellular response to nitrate | 4.56E-04 |
| 29 | GO:0051567: histone H3-K9 methylation | 4.56E-04 |
| 30 | GO:0044205: 'de novo' UMP biosynthetic process | 4.56E-04 |
| 31 | GO:1902183: regulation of shoot apical meristem development | 5.78E-04 |
| 32 | GO:0048578: positive regulation of long-day photoperiodism, flowering | 5.78E-04 |
| 33 | GO:0006544: glycine metabolic process | 5.78E-04 |
| 34 | GO:0035194: posttranscriptional gene silencing by RNA | 7.07E-04 |
| 35 | GO:0045962: positive regulation of development, heterochronic | 7.07E-04 |
| 36 | GO:0016458: gene silencing | 7.07E-04 |
| 37 | GO:0006563: L-serine metabolic process | 7.07E-04 |
| 38 | GO:0006468: protein phosphorylation | 8.13E-04 |
| 39 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 8.44E-04 |
| 40 | GO:1901259: chloroplast rRNA processing | 8.44E-04 |
| 41 | GO:0030488: tRNA methylation | 8.44E-04 |
| 42 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 9.85E-04 |
| 43 | GO:0048437: floral organ development | 9.85E-04 |
| 44 | GO:0006821: chloride transport | 9.85E-04 |
| 45 | GO:0030162: regulation of proteolysis | 1.13E-03 |
| 46 | GO:0001522: pseudouridine synthesis | 1.13E-03 |
| 47 | GO:0009827: plant-type cell wall modification | 1.29E-03 |
| 48 | GO:0006526: arginine biosynthetic process | 1.29E-03 |
| 49 | GO:0007389: pattern specification process | 1.29E-03 |
| 50 | GO:2000024: regulation of leaf development | 1.45E-03 |
| 51 | GO:0000373: Group II intron splicing | 1.45E-03 |
| 52 | GO:0035999: tetrahydrofolate interconversion | 1.62E-03 |
| 53 | GO:0006349: regulation of gene expression by genetic imprinting | 1.62E-03 |
| 54 | GO:0048316: seed development | 1.78E-03 |
| 55 | GO:0010048: vernalization response | 1.79E-03 |
| 56 | GO:0048829: root cap development | 1.79E-03 |
| 57 | GO:0010582: floral meristem determinacy | 2.16E-03 |
| 58 | GO:0015706: nitrate transport | 2.16E-03 |
| 59 | GO:0010075: regulation of meristem growth | 2.36E-03 |
| 60 | GO:0009767: photosynthetic electron transport chain | 2.36E-03 |
| 61 | GO:0009934: regulation of meristem structural organization | 2.56E-03 |
| 62 | GO:0010207: photosystem II assembly | 2.56E-03 |
| 63 | GO:0010167: response to nitrate | 2.76E-03 |
| 64 | GO:0006825: copper ion transport | 3.40E-03 |
| 65 | GO:0006418: tRNA aminoacylation for protein translation | 3.40E-03 |
| 66 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 3.96E-03 |
| 67 | GO:0010227: floral organ abscission | 4.10E-03 |
| 68 | GO:0048653: anther development | 4.83E-03 |
| 69 | GO:0006342: chromatin silencing | 5.09E-03 |
| 70 | GO:0009741: response to brassinosteroid | 5.09E-03 |
| 71 | GO:0009960: endosperm development | 5.09E-03 |
| 72 | GO:0007018: microtubule-based movement | 5.35E-03 |
| 73 | GO:0009646: response to absence of light | 5.35E-03 |
| 74 | GO:0009658: chloroplast organization | 5.47E-03 |
| 75 | GO:0032502: developmental process | 6.15E-03 |
| 76 | GO:0010583: response to cyclopentenone | 6.15E-03 |
| 77 | GO:0031047: gene silencing by RNA | 6.15E-03 |
| 78 | GO:0010252: auxin homeostasis | 6.71E-03 |
| 79 | GO:0080167: response to karrikin | 6.77E-03 |
| 80 | GO:0051607: defense response to virus | 7.29E-03 |
| 81 | GO:0000910: cytokinesis | 7.29E-03 |
| 82 | GO:0009816: defense response to bacterium, incompatible interaction | 7.89E-03 |
| 83 | GO:0006508: proteolysis | 7.98E-03 |
| 84 | GO:0030154: cell differentiation | 8.31E-03 |
| 85 | GO:0010411: xyloglucan metabolic process | 8.50E-03 |
| 86 | GO:0048481: plant ovule development | 9.13E-03 |
| 87 | GO:0010311: lateral root formation | 9.45E-03 |
| 88 | GO:0048364: root development | 1.04E-02 |
| 89 | GO:0009926: auxin polar transport | 1.29E-02 |
| 90 | GO:0042546: cell wall biogenesis | 1.33E-02 |
| 91 | GO:0009965: leaf morphogenesis | 1.40E-02 |
| 92 | GO:0009734: auxin-activated signaling pathway | 1.41E-02 |
| 93 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 1.48E-02 |
| 94 | GO:0009664: plant-type cell wall organization | 1.51E-02 |
| 95 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.63E-02 |
| 96 | GO:0006857: oligopeptide transport | 1.67E-02 |
| 97 | GO:0006417: regulation of translation | 1.71E-02 |
| 98 | GO:0009909: regulation of flower development | 1.71E-02 |
| 99 | GO:0009416: response to light stimulus | 1.78E-02 |
| 100 | GO:0009742: brassinosteroid mediated signaling pathway | 2.13E-02 |
| 101 | GO:0009793: embryo development ending in seed dormancy | 2.16E-02 |
| 102 | GO:0016310: phosphorylation | 2.32E-02 |
| 103 | GO:0009790: embryo development | 2.68E-02 |
| 104 | GO:0016036: cellular response to phosphate starvation | 2.87E-02 |
| 105 | GO:0040008: regulation of growth | 2.92E-02 |
| 106 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.12E-02 |
| 107 | GO:0071555: cell wall organization | 3.61E-02 |
| 108 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 3.90E-02 |
| 109 | GO:0007049: cell cycle | 4.45E-02 |
| 110 | GO:0048366: leaf development | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 2 | GO:0004674: protein serine/threonine kinase activity | 7.93E-06 |
| 3 | GO:0004008: copper-exporting ATPase activity | 5.64E-05 |
| 4 | GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 5.64E-05 |
| 5 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 5.64E-05 |
| 6 | GO:0004830: tryptophan-tRNA ligase activity | 5.64E-05 |
| 7 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 1.37E-04 |
| 8 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 1.37E-04 |
| 9 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 1.37E-04 |
| 10 | GO:0008469: histone-arginine N-methyltransferase activity | 2.34E-04 |
| 11 | GO:0032549: ribonucleoside binding | 2.34E-04 |
| 12 | GO:0035197: siRNA binding | 3.41E-04 |
| 13 | GO:0019199: transmembrane receptor protein kinase activity | 4.56E-04 |
| 14 | GO:0005253: anion channel activity | 4.56E-04 |
| 15 | GO:0004672: protein kinase activity | 5.40E-04 |
| 16 | GO:0004372: glycine hydroxymethyltransferase activity | 5.78E-04 |
| 17 | GO:0005247: voltage-gated chloride channel activity | 7.07E-04 |
| 18 | GO:0016208: AMP binding | 7.07E-04 |
| 19 | GO:0005524: ATP binding | 7.74E-04 |
| 20 | GO:0005375: copper ion transmembrane transporter activity | 1.29E-03 |
| 21 | GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity | 1.29E-03 |
| 22 | GO:0016301: kinase activity | 1.42E-03 |
| 23 | GO:0031625: ubiquitin protein ligase binding | 1.62E-03 |
| 24 | GO:0009672: auxin:proton symporter activity | 1.62E-03 |
| 25 | GO:0001054: RNA polymerase I activity | 1.97E-03 |
| 26 | GO:0004521: endoribonuclease activity | 2.16E-03 |
| 27 | GO:0009982: pseudouridine synthase activity | 2.36E-03 |
| 28 | GO:0010329: auxin efflux transmembrane transporter activity | 2.36E-03 |
| 29 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 2.36E-03 |
| 30 | GO:0004252: serine-type endopeptidase activity | 2.86E-03 |
| 31 | GO:0033612: receptor serine/threonine kinase binding | 3.63E-03 |
| 32 | GO:0003727: single-stranded RNA binding | 4.34E-03 |
| 33 | GO:0004812: aminoacyl-tRNA ligase activity | 4.58E-03 |
| 34 | GO:0018024: histone-lysine N-methyltransferase activity | 4.58E-03 |
| 35 | GO:0005515: protein binding | 4.75E-03 |
| 36 | GO:0005199: structural constituent of cell wall | 5.09E-03 |
| 37 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 5.88E-03 |
| 38 | GO:0016759: cellulose synthase activity | 6.71E-03 |
| 39 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 8.50E-03 |
| 40 | GO:0042803: protein homodimerization activity | 8.50E-03 |
| 41 | GO:0008236: serine-type peptidase activity | 8.81E-03 |
| 42 | GO:0004222: metalloendopeptidase activity | 9.78E-03 |
| 43 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 9.78E-03 |
| 44 | GO:0003697: single-stranded DNA binding | 1.08E-02 |
| 45 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.18E-02 |
| 46 | GO:0004185: serine-type carboxypeptidase activity | 1.29E-02 |
| 47 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.59E-02 |
| 48 | GO:0003777: microtubule motor activity | 1.71E-02 |
| 49 | GO:0019843: rRNA binding | 2.40E-02 |
| 50 | GO:0030170: pyridoxal phosphate binding | 2.58E-02 |
| 51 | GO:0008017: microtubule binding | 3.12E-02 |
| 52 | GO:0005215: transporter activity | 3.98E-02 |
| 53 | GO:0008168: methyltransferase activity | 4.01E-02 |
| 54 | GO:0046982: protein heterodimerization activity | 4.06E-02 |
| 55 | GO:0016788: hydrolase activity, acting on ester bonds | 4.17E-02 |
| 56 | GO:0003682: chromatin binding | 4.29E-02 |
| 57 | GO:0061630: ubiquitin protein ligase activity | 4.97E-02 |