Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G17998

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0044249: cellular biosynthetic process0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0090071: negative regulation of ribosome biogenesis0.00E+00
9GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
10GO:0045184: establishment of protein localization0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0009658: chloroplast organization8.95E-12
13GO:0042793: transcription from plastid promoter4.00E-10
14GO:0009657: plastid organization1.01E-06
15GO:0009451: RNA modification6.02E-06
16GO:0042026: protein refolding1.44E-05
17GO:1901259: chloroplast rRNA processing1.44E-05
18GO:0006353: DNA-templated transcription, termination3.32E-05
19GO:0010239: chloroplast mRNA processing9.04E-05
20GO:0010583: response to cyclopentenone1.59E-04
21GO:0009790: embryo development1.97E-04
22GO:0009828: plant-type cell wall loosening1.99E-04
23GO:0009664: plant-type cell wall organization2.20E-04
24GO:0010020: chloroplast fission2.33E-04
25GO:0006458: 'de novo' protein folding4.47E-04
26GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.37E-04
27GO:0006419: alanyl-tRNA aminoacylation5.37E-04
28GO:0070509: calcium ion import5.37E-04
29GO:0042659: regulation of cell fate specification5.37E-04
30GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.37E-04
31GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.37E-04
32GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.37E-04
33GO:0010063: positive regulation of trichoblast fate specification5.37E-04
34GO:0010480: microsporocyte differentiation5.37E-04
35GO:0090558: plant epidermis development5.37E-04
36GO:0042371: vitamin K biosynthetic process5.37E-04
37GO:0035987: endodermal cell differentiation5.37E-04
38GO:0006436: tryptophanyl-tRNA aminoacylation5.37E-04
39GO:0048437: floral organ development5.72E-04
40GO:0008033: tRNA processing8.12E-04
41GO:0006508: proteolysis8.24E-04
42GO:0000373: Group II intron splicing1.04E-03
43GO:2000123: positive regulation of stomatal complex development1.16E-03
44GO:0006420: arginyl-tRNA aminoacylation1.16E-03
45GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.16E-03
46GO:0000086: G2/M transition of mitotic cell cycle1.16E-03
47GO:1900871: chloroplast mRNA modification1.16E-03
48GO:0010254: nectary development1.16E-03
49GO:0060359: response to ammonium ion1.16E-03
50GO:0018026: peptidyl-lysine monomethylation1.16E-03
51GO:0048255: mRNA stabilization1.16E-03
52GO:1902326: positive regulation of chlorophyll biosynthetic process1.16E-03
53GO:0009662: etioplast organization1.16E-03
54GO:0042325: regulation of phosphorylation1.16E-03
55GO:0010434: bract formation1.16E-03
56GO:0009220: pyrimidine ribonucleotide biosynthetic process1.16E-03
57GO:0015712: hexose phosphate transport1.16E-03
58GO:1904143: positive regulation of carotenoid biosynthetic process1.16E-03
59GO:0048439: flower morphogenesis1.16E-03
60GO:0001682: tRNA 5'-leader removal1.16E-03
61GO:0032502: developmental process1.26E-03
62GO:0006949: syncytium formation1.43E-03
63GO:0048229: gametophyte development1.65E-03
64GO:0010027: thylakoid membrane organization1.86E-03
65GO:0010582: floral meristem determinacy1.89E-03
66GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.90E-03
67GO:0045910: negative regulation of DNA recombination1.90E-03
68GO:0006954: inflammatory response1.90E-03
69GO:0048281: inflorescence morphogenesis1.90E-03
70GO:0090708: specification of plant organ axis polarity1.90E-03
71GO:0035436: triose phosphate transmembrane transport1.90E-03
72GO:0042780: tRNA 3'-end processing1.90E-03
73GO:0001578: microtubule bundle formation1.90E-03
74GO:0043157: response to cation stress1.90E-03
75GO:0005977: glycogen metabolic process1.90E-03
76GO:0009954: proximal/distal pattern formation1.90E-03
77GO:0009793: embryo development ending in seed dormancy2.05E-03
78GO:0010411: xyloglucan metabolic process2.29E-03
79GO:0010207: photosystem II assembly2.43E-03
80GO:0009934: regulation of meristem structural organization2.43E-03
81GO:0051085: chaperone mediated protein folding requiring cofactor2.75E-03
82GO:0010306: rhamnogalacturonan II biosynthetic process2.75E-03
83GO:0046739: transport of virus in multicellular host2.75E-03
84GO:0019048: modulation by virus of host morphology or physiology2.75E-03
85GO:0016572: histone phosphorylation2.75E-03
86GO:0009558: embryo sac cellularization2.75E-03
87GO:0043572: plastid fission2.75E-03
88GO:0006164: purine nucleotide biosynthetic process2.75E-03
89GO:0031048: chromatin silencing by small RNA2.75E-03
90GO:0010148: transpiration2.75E-03
91GO:2001141: regulation of RNA biosynthetic process2.75E-03
92GO:0016556: mRNA modification2.75E-03
93GO:1902476: chloride transmembrane transport2.75E-03
94GO:0010071: root meristem specification2.75E-03
95GO:0051513: regulation of monopolar cell growth2.75E-03
96GO:0009944: polarity specification of adaxial/abaxial axis3.37E-03
97GO:0030104: water homeostasis3.71E-03
98GO:0051322: anaphase3.71E-03
99GO:2000038: regulation of stomatal complex development3.71E-03
100GO:0044205: 'de novo' UMP biosynthetic process3.71E-03
101GO:0051567: histone H3-K9 methylation3.71E-03
102GO:0015713: phosphoglycerate transport3.71E-03
103GO:0010021: amylopectin biosynthetic process3.71E-03
104GO:0009755: hormone-mediated signaling pathway3.71E-03
105GO:0006479: protein methylation3.71E-03
106GO:0051302: regulation of cell division3.72E-03
107GO:0006418: tRNA aminoacylation for protein translation3.72E-03
108GO:0061077: chaperone-mediated protein folding4.09E-03
109GO:0016998: cell wall macromolecule catabolic process4.09E-03
110GO:0007005: mitochondrion organization4.48E-03
111GO:0006730: one-carbon metabolic process4.48E-03
112GO:0010158: abaxial cell fate specification4.75E-03
113GO:0048578: positive regulation of long-day photoperiodism, flowering4.75E-03
114GO:0010375: stomatal complex patterning4.75E-03
115GO:0010236: plastoquinone biosynthetic process4.75E-03
116GO:0048497: maintenance of floral organ identity4.75E-03
117GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.89E-03
118GO:0042546: cell wall biogenesis5.16E-03
119GO:0009959: negative gravitropism5.89E-03
120GO:0009913: epidermal cell differentiation5.89E-03
121GO:0006655: phosphatidylglycerol biosynthetic process5.89E-03
122GO:0010389: regulation of G2/M transition of mitotic cell cycle5.89E-03
123GO:0016458: gene silencing5.89E-03
124GO:0050665: hydrogen peroxide biosynthetic process5.89E-03
125GO:0018258: protein O-linked glycosylation via hydroxyproline5.89E-03
126GO:0009228: thiamine biosynthetic process5.89E-03
127GO:0010405: arabinogalactan protein metabolic process5.89E-03
128GO:0010304: PSII associated light-harvesting complex II catabolic process5.89E-03
129GO:0048868: pollen tube development6.74E-03
130GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity7.11E-03
131GO:2000067: regulation of root morphogenesis7.11E-03
132GO:0009955: adaxial/abaxial pattern specification7.11E-03
133GO:0042372: phylloquinone biosynthetic process7.11E-03
134GO:0019509: L-methionine salvage from methylthioadenosine7.11E-03
135GO:0009082: branched-chain amino acid biosynthetic process7.11E-03
136GO:0017148: negative regulation of translation7.11E-03
137GO:0009942: longitudinal axis specification7.11E-03
138GO:0009099: valine biosynthetic process7.11E-03
139GO:0030488: tRNA methylation7.11E-03
140GO:0009854: oxidative photosynthetic carbon pathway7.11E-03
141GO:0009416: response to light stimulus7.32E-03
142GO:0009851: auxin biosynthetic process7.78E-03
143GO:0006955: immune response8.42E-03
144GO:0048528: post-embryonic root development8.42E-03
145GO:0009772: photosynthetic electron transport in photosystem II8.42E-03
146GO:0006821: chloride transport8.42E-03
147GO:0070370: cellular heat acclimation8.42E-03
148GO:0010444: guard mother cell differentiation8.42E-03
149GO:0010050: vegetative phase change8.42E-03
150GO:0006400: tRNA modification8.42E-03
151GO:0000082: G1/S transition of mitotic cell cycle8.42E-03
152GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process8.42E-03
153GO:0010103: stomatal complex morphogenesis8.42E-03
154GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway8.42E-03
155GO:0048564: photosystem I assembly9.81E-03
156GO:0001522: pseudouridine synthesis9.81E-03
157GO:0009850: auxin metabolic process9.81E-03
158GO:0009704: de-etiolation9.81E-03
159GO:0030162: regulation of proteolysis9.81E-03
160GO:0042255: ribosome assembly9.81E-03
161GO:0046620: regulation of organ growth9.81E-03
162GO:0070413: trehalose metabolism in response to stress9.81E-03
163GO:0055075: potassium ion homeostasis9.81E-03
164GO:0009826: unidimensional cell growth1.02E-02
165GO:0009932: cell tip growth1.13E-02
166GO:0001558: regulation of cell growth1.13E-02
167GO:0071482: cellular response to light stimulus1.13E-02
168GO:0010052: guard cell differentiation1.13E-02
169GO:0009827: plant-type cell wall modification1.13E-02
170GO:0009097: isoleucine biosynthetic process1.13E-02
171GO:0006526: arginine biosynthetic process1.13E-02
172GO:0010204: defense response signaling pathway, resistance gene-independent1.13E-02
173GO:0010497: plasmodesmata-mediated intercellular transport1.13E-02
174GO:0007389: pattern specification process1.13E-02
175GO:0000910: cytokinesis1.14E-02
176GO:0009742: brassinosteroid mediated signaling pathway1.22E-02
177GO:0006098: pentose-phosphate shunt1.28E-02
178GO:0000902: cell morphogenesis1.28E-02
179GO:2000280: regulation of root development1.44E-02
180GO:0009638: phototropism1.44E-02
181GO:0009098: leucine biosynthetic process1.44E-02
182GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.44E-02
183GO:0009734: auxin-activated signaling pathway1.47E-02
184GO:0048481: plant ovule development1.59E-02
185GO:0006259: DNA metabolic process1.61E-02
186GO:0006535: cysteine biosynthetic process from serine1.61E-02
187GO:0009688: abscisic acid biosynthetic process1.61E-02
188GO:0030422: production of siRNA involved in RNA interference1.61E-02
189GO:0045036: protein targeting to chloroplast1.61E-02
190GO:0009641: shade avoidance1.61E-02
191GO:0006298: mismatch repair1.61E-02
192GO:0010015: root morphogenesis1.79E-02
193GO:0006265: DNA topological change1.79E-02
194GO:0009089: lysine biosynthetic process via diaminopimelate1.79E-02
195GO:0009073: aromatic amino acid family biosynthetic process1.79E-02
196GO:0006352: DNA-templated transcription, initiation1.79E-02
197GO:0016024: CDP-diacylglycerol biosynthetic process1.97E-02
198GO:0045037: protein import into chloroplast stroma1.97E-02
199GO:0040008: regulation of growth2.13E-02
200GO:0006094: gluconeogenesis2.15E-02
201GO:0009767: photosynthetic electron transport chain2.15E-02
202GO:0009785: blue light signaling pathway2.15E-02
203GO:0009691: cytokinin biosynthetic process2.15E-02
204GO:0050826: response to freezing2.15E-02
205GO:0010075: regulation of meristem growth2.15E-02
206GO:0071732: cellular response to nitric oxide2.55E-02
207GO:0090351: seedling development2.55E-02
208GO:0070588: calcium ion transmembrane transport2.55E-02
209GO:0010114: response to red light2.60E-02
210GO:0009926: auxin polar transport2.60E-02
211GO:0006833: water transport2.75E-02
212GO:0019344: cysteine biosynthetic process2.96E-02
213GO:0009116: nucleoside metabolic process2.96E-02
214GO:0000027: ribosomal large subunit assembly2.96E-02
215GO:0005992: trehalose biosynthetic process2.96E-02
216GO:0019953: sexual reproduction3.18E-02
217GO:0010073: meristem maintenance3.18E-02
218GO:0006825: copper ion transport3.18E-02
219GO:0006306: DNA methylation3.40E-02
220GO:0015992: proton transport3.40E-02
221GO:0006364: rRNA processing3.50E-02
222GO:0016226: iron-sulfur cluster assembly3.63E-02
223GO:0051603: proteolysis involved in cellular protein catabolic process3.63E-02
224GO:0010082: regulation of root meristem growth3.86E-02
225GO:0071369: cellular response to ethylene stimulus3.86E-02
226GO:0001944: vasculature development3.86E-02
227GO:0010227: floral organ abscission3.86E-02
228GO:0006417: regulation of translation3.88E-02
229GO:0042254: ribosome biogenesis3.99E-02
230GO:0042127: regulation of cell proliferation4.09E-02
231GO:0048316: seed development4.27E-02
232GO:0048367: shoot system development4.27E-02
233GO:0008284: positive regulation of cell proliferation4.33E-02
234GO:0048653: anther development4.58E-02
235GO:0000226: microtubule cytoskeleton organization4.58E-02
236GO:0048366: leaf development4.76E-02
237GO:0009553: embryo sac development4.82E-02
238GO:0006662: glycerol ether metabolic process4.83E-02
239GO:0010305: leaf vascular tissue pattern formation4.83E-02
240GO:0006342: chromatin silencing4.83E-02
241GO:0009741: response to brassinosteroid4.83E-02
RankGO TermAdjusted P value
1GO:0003937: IMP cyclohydrolase activity0.00E+00
2GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
3GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
4GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
5GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
6GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
7GO:0004056: argininosuccinate lyase activity0.00E+00
8GO:0004358: glutamate N-acetyltransferase activity0.00E+00
9GO:0008237: metallopeptidase activity9.72E-07
10GO:0004176: ATP-dependent peptidase activity1.47E-06
11GO:0004519: endonuclease activity6.80E-06
12GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.26E-05
13GO:0003723: RNA binding6.39E-05
14GO:0044183: protein binding involved in protein folding1.32E-04
15GO:0019843: rRNA binding1.37E-04
16GO:0016773: phosphotransferase activity, alcohol group as acceptor2.38E-04
17GO:0004222: metalloendopeptidase activity4.84E-04
18GO:0005227: calcium activated cation channel activity5.37E-04
19GO:0016274: protein-arginine N-methyltransferase activity5.37E-04
20GO:0042834: peptidoglycan binding5.37E-04
21GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.37E-04
22GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.37E-04
23GO:0004813: alanine-tRNA ligase activity5.37E-04
24GO:0004008: copper-exporting ATPase activity5.37E-04
25GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.37E-04
26GO:0004830: tryptophan-tRNA ligase activity5.37E-04
27GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity5.37E-04
28GO:0010285: L,L-diaminopimelate aminotransferase activity5.37E-04
29GO:0052381: tRNA dimethylallyltransferase activity5.37E-04
30GO:0004160: dihydroxy-acid dehydratase activity5.37E-04
31GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity8.68E-04
32GO:0005524: ATP binding9.51E-04
33GO:0043621: protein self-association9.99E-04
34GO:0004047: aminomethyltransferase activity1.16E-03
35GO:0019156: isoamylase activity1.16E-03
36GO:0016762: xyloglucan:xyloglucosyl transferase activity1.16E-03
37GO:0003852: 2-isopropylmalate synthase activity1.16E-03
38GO:0004814: arginine-tRNA ligase activity1.16E-03
39GO:0016887: ATPase activity1.74E-03
40GO:0046524: sucrose-phosphate synthase activity1.90E-03
41GO:0070330: aromatase activity1.90E-03
42GO:0017150: tRNA dihydrouridine synthase activity1.90E-03
43GO:0042781: 3'-tRNA processing endoribonuclease activity1.90E-03
44GO:0016805: dipeptidase activity1.90E-03
45GO:0071917: triose-phosphate transmembrane transporter activity1.90E-03
46GO:0016798: hydrolase activity, acting on glycosyl bonds2.29E-03
47GO:0008508: bile acid:sodium symporter activity2.75E-03
48GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.75E-03
49GO:0001872: (1->3)-beta-D-glucan binding2.75E-03
50GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.75E-03
51GO:0009678: hydrogen-translocating pyrophosphatase activity2.75E-03
52GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.75E-03
53GO:0035197: siRNA binding2.75E-03
54GO:0043023: ribosomal large subunit binding2.75E-03
55GO:0016836: hydro-lyase activity3.71E-03
56GO:0004031: aldehyde oxidase activity3.71E-03
57GO:0016987: sigma factor activity3.71E-03
58GO:0050302: indole-3-acetaldehyde oxidase activity3.71E-03
59GO:0005253: anion channel activity3.71E-03
60GO:0042277: peptide binding3.71E-03
61GO:0019199: transmembrane receptor protein kinase activity3.71E-03
62GO:0008891: glycolate oxidase activity3.71E-03
63GO:0015120: phosphoglycerate transmembrane transporter activity3.71E-03
64GO:0004659: prenyltransferase activity3.71E-03
65GO:0016279: protein-lysine N-methyltransferase activity3.71E-03
66GO:0001053: plastid sigma factor activity3.71E-03
67GO:0016829: lyase activity3.82E-03
68GO:0005275: amine transmembrane transporter activity4.75E-03
69GO:0018685: alkane 1-monooxygenase activity4.75E-03
70GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.75E-03
71GO:0004812: aminoacyl-tRNA ligase activity5.77E-03
72GO:0030983: mismatched DNA binding5.89E-03
73GO:0004605: phosphatidate cytidylyltransferase activity5.89E-03
74GO:1990714: hydroxyproline O-galactosyltransferase activity5.89E-03
75GO:0030332: cyclin binding5.89E-03
76GO:0004332: fructose-bisphosphate aldolase activity5.89E-03
77GO:0004526: ribonuclease P activity5.89E-03
78GO:0004556: alpha-amylase activity5.89E-03
79GO:0005247: voltage-gated chloride channel activity5.89E-03
80GO:0004124: cysteine synthase activity7.11E-03
81GO:0008195: phosphatidate phosphatase activity7.11E-03
82GO:0019901: protein kinase binding7.78E-03
83GO:0003777: microtubule motor activity8.19E-03
84GO:0004427: inorganic diphosphatase activity8.42E-03
85GO:0043022: ribosome binding9.81E-03
86GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.13E-02
87GO:0005375: copper ion transmembrane transporter activity1.13E-02
88GO:0051082: unfolded protein binding1.13E-02
89GO:0016597: amino acid binding1.14E-02
90GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.26E-02
91GO:0009672: auxin:proton symporter activity1.44E-02
92GO:0004805: trehalose-phosphatase activity1.61E-02
93GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.75E-02
94GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.84E-02
95GO:0004521: endoribonuclease activity1.97E-02
96GO:0000049: tRNA binding1.97E-02
97GO:0019888: protein phosphatase regulator activity2.15E-02
98GO:0009982: pseudouridine synthase activity2.15E-02
99GO:0004565: beta-galactosidase activity2.15E-02
100GO:0010329: auxin efflux transmembrane transporter activity2.15E-02
101GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.15E-02
102GO:0005262: calcium channel activity2.15E-02
103GO:0051539: 4 iron, 4 sulfur cluster binding2.30E-02
104GO:0008017: microtubule binding2.40E-02
105GO:0004185: serine-type carboxypeptidase activity2.60E-02
106GO:0009055: electron carrier activity2.96E-02
107GO:0015079: potassium ion transmembrane transporter activity3.18E-02
108GO:0005345: purine nucleobase transmembrane transporter activity3.18E-02
109GO:0033612: receptor serine/threonine kinase binding3.40E-02
110GO:0008408: 3'-5' exonuclease activity3.40E-02
111GO:0003690: double-stranded DNA binding3.63E-02
112GO:0008168: methyltransferase activity3.72E-02
113GO:0030570: pectate lyase activity3.86E-02
114GO:0005507: copper ion binding3.94E-02
115GO:0003727: single-stranded RNA binding4.09E-02
116GO:0047134: protein-disulfide reductase activity4.33E-02
117GO:0050660: flavin adenine dinucleotide binding4.66E-02
118GO:0008536: Ran GTPase binding4.83E-02
119GO:0004527: exonuclease activity4.83E-02
120GO:0003713: transcription coactivator activity4.83E-02
121GO:0005525: GTP binding4.97E-02
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Gene type



Gene DE type