Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G17640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070979: protein K11-linked ubiquitination0.00E+00
2GO:0071260: cellular response to mechanical stimulus0.00E+00
3GO:0043488: regulation of mRNA stability0.00E+00
4GO:0061157: mRNA destabilization0.00E+00
5GO:0090706: specification of plant organ position0.00E+00
6GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
7GO:0031116: positive regulation of microtubule polymerization0.00E+00
8GO:0010068: protoderm histogenesis0.00E+00
9GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0097164: ammonium ion metabolic process0.00E+00
12GO:0031129: inductive cell-cell signaling0.00E+00
13GO:0071311: cellular response to acetate0.00E+00
14GO:0015843: methylammonium transport0.00E+00
15GO:0031222: arabinan catabolic process0.00E+00
16GO:0009733: response to auxin2.03E-10
17GO:0046620: regulation of organ growth2.17E-10
18GO:0009734: auxin-activated signaling pathway1.23E-08
19GO:0040008: regulation of growth3.05E-07
20GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.33E-06
21GO:0009926: auxin polar transport5.14E-05
22GO:0006468: protein phosphorylation6.53E-05
23GO:0032502: developmental process3.59E-04
24GO:0010158: abaxial cell fate specification3.91E-04
25GO:1902183: regulation of shoot apical meristem development3.91E-04
26GO:0009658: chloroplast organization5.14E-04
27GO:0005992: trehalose biosynthetic process6.82E-04
28GO:0009903: chloroplast avoidance movement7.18E-04
29GO:0006177: GMP biosynthetic process7.40E-04
30GO:0010450: inflorescence meristem growth7.40E-04
31GO:0051171: regulation of nitrogen compound metabolic process7.40E-04
32GO:0010482: regulation of epidermal cell division7.40E-04
33GO:1902265: abscisic acid homeostasis7.40E-04
34GO:0010480: microsporocyte differentiation7.40E-04
35GO:0046520: sphingoid biosynthetic process7.40E-04
36GO:0006264: mitochondrial DNA replication7.40E-04
37GO:0033259: plastid DNA replication7.40E-04
38GO:0000066: mitochondrial ornithine transport7.40E-04
39GO:0007166: cell surface receptor signaling pathway1.03E-03
40GO:0009787: regulation of abscisic acid-activated signaling pathway1.14E-03
41GO:0042255: ribosome assembly1.14E-03
42GO:0015804: neutral amino acid transport1.60E-03
43GO:1900871: chloroplast mRNA modification1.60E-03
44GO:0070981: L-asparagine biosynthetic process1.60E-03
45GO:0007154: cell communication1.60E-03
46GO:2000039: regulation of trichome morphogenesis1.60E-03
47GO:0071497: cellular response to freezing1.60E-03
48GO:1900033: negative regulation of trichome patterning1.60E-03
49GO:0042814: monopolar cell growth1.60E-03
50GO:0006423: cysteinyl-tRNA aminoacylation1.60E-03
51GO:0009786: regulation of asymmetric cell division1.60E-03
52GO:0031648: protein destabilization1.60E-03
53GO:0006529: asparagine biosynthetic process1.60E-03
54GO:2000024: regulation of leaf development1.66E-03
55GO:0000373: Group II intron splicing1.66E-03
56GO:0009638: phototropism1.97E-03
57GO:0007275: multicellular organism development2.32E-03
58GO:0030154: cell differentiation2.48E-03
59GO:0031022: nuclear migration along microfilament2.64E-03
60GO:0051127: positive regulation of actin nucleation2.64E-03
61GO:0071230: cellular response to amino acid stimulus2.64E-03
62GO:0031145: anaphase-promoting complex-dependent catabolic process2.64E-03
63GO:0009150: purine ribonucleotide metabolic process2.64E-03
64GO:0051604: protein maturation2.64E-03
65GO:0045604: regulation of epidermal cell differentiation2.64E-03
66GO:0001578: microtubule bundle formation2.64E-03
67GO:0016050: vesicle organization2.64E-03
68GO:0045165: cell fate commitment2.64E-03
69GO:0006816: calcium ion transport2.67E-03
70GO:0009767: photosynthetic electron transport chain3.49E-03
71GO:2000012: regulation of auxin polar transport3.49E-03
72GO:0051513: regulation of monopolar cell growth3.85E-03
73GO:0007231: osmosensory signaling pathway3.85E-03
74GO:0030071: regulation of mitotic metaphase/anaphase transition3.85E-03
75GO:0051639: actin filament network formation3.85E-03
76GO:0009226: nucleotide-sugar biosynthetic process3.85E-03
77GO:0048645: animal organ formation3.85E-03
78GO:0044211: CTP salvage3.85E-03
79GO:0010255: glucose mediated signaling pathway3.85E-03
80GO:0015696: ammonium transport3.85E-03
81GO:0048530: fruit morphogenesis3.85E-03
82GO:0046739: transport of virus in multicellular host3.85E-03
83GO:0032981: mitochondrial respiratory chain complex I assembly3.85E-03
84GO:2000904: regulation of starch metabolic process3.85E-03
85GO:0006164: purine nucleotide biosynthetic process3.85E-03
86GO:0043572: plastid fission3.85E-03
87GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.85E-03
88GO:0009067: aspartate family amino acid biosynthetic process3.85E-03
89GO:0010020: chloroplast fission3.95E-03
90GO:0090351: seedling development4.43E-03
91GO:0009740: gibberellic acid mediated signaling pathway4.63E-03
92GO:0071555: cell wall organization5.05E-03
93GO:0051764: actin crosslink formation5.20E-03
94GO:0051322: anaphase5.20E-03
95GO:0033500: carbohydrate homeostasis5.20E-03
96GO:0072488: ammonium transmembrane transport5.20E-03
97GO:0022622: root system development5.20E-03
98GO:0044205: 'de novo' UMP biosynthetic process5.20E-03
99GO:0009902: chloroplast relocation5.20E-03
100GO:0007020: microtubule nucleation5.20E-03
101GO:0044206: UMP salvage5.20E-03
102GO:0009165: nucleotide biosynthetic process5.20E-03
103GO:1901141: regulation of lignin biosynthetic process5.20E-03
104GO:0048629: trichome patterning5.20E-03
105GO:0009944: polarity specification of adaxial/abaxial axis5.50E-03
106GO:0010187: negative regulation of seed germination5.50E-03
107GO:0009742: brassinosteroid mediated signaling pathway5.55E-03
108GO:0016123: xanthophyll biosynthetic process6.69E-03
109GO:0016131: brassinosteroid metabolic process6.69E-03
110GO:0032876: negative regulation of DNA endoreduplication6.69E-03
111GO:0046785: microtubule polymerization6.69E-03
112GO:0009904: chloroplast accumulation movement6.69E-03
113GO:0006544: glycine metabolic process6.69E-03
114GO:2000022: regulation of jasmonic acid mediated signaling pathway7.34E-03
115GO:0006839: mitochondrial transport7.84E-03
116GO:0009959: negative gravitropism8.31E-03
117GO:0006655: phosphatidylglycerol biosynthetic process8.31E-03
118GO:0006139: nucleobase-containing compound metabolic process8.31E-03
119GO:0045962: positive regulation of development, heterochronic8.31E-03
120GO:0009117: nucleotide metabolic process8.31E-03
121GO:0006206: pyrimidine nucleobase metabolic process8.31E-03
122GO:0018258: protein O-linked glycosylation via hydroxyproline8.31E-03
123GO:0000741: karyogamy8.31E-03
124GO:0006563: L-serine metabolic process8.31E-03
125GO:0010405: arabinogalactan protein metabolic process8.31E-03
126GO:0080167: response to karrikin9.72E-03
127GO:0016310: phosphorylation1.01E-02
128GO:0042372: phylloquinone biosynthetic process1.01E-02
129GO:0030488: tRNA methylation1.01E-02
130GO:2000033: regulation of seed dormancy process1.01E-02
131GO:0009088: threonine biosynthetic process1.01E-02
132GO:0048444: floral organ morphogenesis1.01E-02
133GO:0080086: stamen filament development1.01E-02
134GO:0010087: phloem or xylem histogenesis1.02E-02
135GO:0009958: positive gravitropism1.11E-02
136GO:0010182: sugar mediated signaling pathway1.11E-02
137GO:0006855: drug transmembrane transport1.12E-02
138GO:0007623: circadian rhythm1.17E-02
139GO:0009646: response to absence of light1.19E-02
140GO:0048528: post-embryonic root development1.19E-02
141GO:0010050: vegetative phase change1.19E-02
142GO:0048437: floral organ development1.19E-02
143GO:0030307: positive regulation of cell growth1.19E-02
144GO:0032880: regulation of protein localization1.19E-02
145GO:0010161: red light signaling pathway1.19E-02
146GO:0009610: response to symbiotic fungus1.19E-02
147GO:0009850: auxin metabolic process1.39E-02
148GO:0009690: cytokinin metabolic process1.39E-02
149GO:0010078: maintenance of root meristem identity1.39E-02
150GO:0009704: de-etiolation1.39E-02
151GO:0032875: regulation of DNA endoreduplication1.39E-02
152GO:0006353: DNA-templated transcription, termination1.39E-02
153GO:0070413: trehalose metabolism in response to stress1.39E-02
154GO:0010099: regulation of photomorphogenesis1.60E-02
155GO:0006002: fructose 6-phosphate metabolic process1.60E-02
156GO:0009827: plant-type cell wall modification1.60E-02
157GO:0010100: negative regulation of photomorphogenesis1.60E-02
158GO:0006997: nucleus organization1.60E-02
159GO:0006526: arginine biosynthetic process1.60E-02
160GO:0010497: plasmodesmata-mediated intercellular transport1.60E-02
161GO:0007389: pattern specification process1.60E-02
162GO:0043562: cellular response to nitrogen levels1.60E-02
163GO:0010093: specification of floral organ identity1.60E-02
164GO:0010252: auxin homeostasis1.67E-02
165GO:0048367: shoot system development1.74E-02
166GO:0051865: protein autoubiquitination1.82E-02
167GO:0009051: pentose-phosphate shunt, oxidative branch1.82E-02
168GO:0006783: heme biosynthetic process1.82E-02
169GO:0006189: 'de novo' IMP biosynthetic process1.82E-02
170GO:0000902: cell morphogenesis1.82E-02
171GO:0009416: response to light stimulus1.90E-02
172GO:0042761: very long-chain fatty acid biosynthetic process2.05E-02
173GO:0035999: tetrahydrofolate interconversion2.05E-02
174GO:1900865: chloroplast RNA modification2.05E-02
175GO:0010380: regulation of chlorophyll biosynthetic process2.05E-02
176GO:0031425: chloroplast RNA processing2.05E-02
177GO:0071577: zinc II ion transmembrane transport2.05E-02
178GO:0010029: regulation of seed germination2.11E-02
179GO:0009299: mRNA transcription2.29E-02
180GO:0010162: seed dormancy process2.29E-02
181GO:0006535: cysteine biosynthetic process from serine2.29E-02
182GO:0048829: root cap development2.29E-02
183GO:0009641: shade avoidance2.29E-02
184GO:0009684: indoleacetic acid biosynthetic process2.54E-02
185GO:0010015: root morphogenesis2.54E-02
186GO:0009089: lysine biosynthetic process via diaminopimelate2.54E-02
187GO:0009773: photosynthetic electron transport in photosystem I2.54E-02
188GO:1903507: negative regulation of nucleic acid-templated transcription2.54E-02
189GO:0048229: gametophyte development2.54E-02
190GO:0006415: translational termination2.54E-02
191GO:0000160: phosphorelay signal transduction system2.74E-02
192GO:0006790: sulfur compound metabolic process2.80E-02
193GO:0016024: CDP-diacylglycerol biosynthetic process2.80E-02
194GO:0010582: floral meristem determinacy2.80E-02
195GO:0009723: response to ethylene2.81E-02
196GO:0048527: lateral root development3.01E-02
197GO:0030048: actin filament-based movement3.07E-02
198GO:0010588: cotyledon vascular tissue pattern formation3.07E-02
199GO:0010628: positive regulation of gene expression3.07E-02
200GO:0006006: glucose metabolic process3.07E-02
201GO:0009785: blue light signaling pathway3.07E-02
202GO:0030036: actin cytoskeleton organization3.07E-02
203GO:0010075: regulation of meristem growth3.07E-02
204GO:0009725: response to hormone3.07E-02
205GO:0006865: amino acid transport3.16E-02
206GO:0009637: response to blue light3.30E-02
207GO:0048467: gynoecium development3.34E-02
208GO:0010207: photosystem II assembly3.34E-02
209GO:0006541: glutamine metabolic process3.34E-02
210GO:0009933: meristem structural organization3.34E-02
211GO:0009934: regulation of meristem structural organization3.34E-02
212GO:0010030: positive regulation of seed germination3.63E-02
213GO:0070588: calcium ion transmembrane transport3.63E-02
214GO:0010025: wax biosynthetic process3.92E-02
215GO:0006631: fatty acid metabolic process3.92E-02
216GO:0009833: plant-type primary cell wall biogenesis3.92E-02
217GO:0006071: glycerol metabolic process3.92E-02
218GO:0019344: cysteine biosynthetic process4.22E-02
219GO:0051017: actin filament bundle assembly4.22E-02
220GO:0030150: protein import into mitochondrial matrix4.22E-02
221GO:0007010: cytoskeleton organization4.22E-02
222GO:0008283: cell proliferation4.25E-02
223GO:0009640: photomorphogenesis4.25E-02
224GO:0006418: tRNA aminoacylation for protein translation4.52E-02
225GO:0006874: cellular calcium ion homeostasis4.52E-02
226GO:0043622: cortical microtubule organization4.52E-02
227GO:0006825: copper ion transport4.52E-02
228GO:0009738: abscisic acid-activated signaling pathway4.69E-02
229GO:0009965: leaf morphogenesis4.77E-02
230GO:0003333: amino acid transmembrane transport4.84E-02
231GO:0016998: cell wall macromolecule catabolic process4.84E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
3GO:0015276: ligand-gated ion channel activity0.00E+00
4GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
5GO:0004056: argininosuccinate lyase activity0.00E+00
6GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
7GO:0004672: protein kinase activity1.24E-04
8GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.49E-04
9GO:0004805: trehalose-phosphatase activity2.12E-04
10GO:0043621: protein self-association4.18E-04
11GO:0004674: protein serine/threonine kinase activity4.81E-04
12GO:0016301: kinase activity5.59E-04
13GO:0000170: sphingosine hydroxylase activity7.40E-04
14GO:0050139: nicotinate-N-glucosyltransferase activity7.40E-04
15GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity7.40E-04
16GO:0008066: glutamate receptor activity7.40E-04
17GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.40E-04
18GO:0005290: L-histidine transmembrane transporter activity7.40E-04
19GO:0004008: copper-exporting ATPase activity7.40E-04
20GO:0004071: aspartate-ammonia ligase activity7.40E-04
21GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.40E-04
22GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity7.40E-04
23GO:0010313: phytochrome binding7.40E-04
24GO:0003727: single-stranded RNA binding1.22E-03
25GO:0003938: IMP dehydrogenase activity1.60E-03
26GO:0004817: cysteine-tRNA ligase activity1.60E-03
27GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.60E-03
28GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.60E-03
29GO:0042284: sphingolipid delta-4 desaturase activity1.60E-03
30GO:0000064: L-ornithine transmembrane transporter activity1.60E-03
31GO:0015929: hexosaminidase activity1.60E-03
32GO:0004563: beta-N-acetylhexosaminidase activity1.60E-03
33GO:0015172: acidic amino acid transmembrane transporter activity1.60E-03
34GO:0050017: L-3-cyanoalanine synthase activity1.60E-03
35GO:0017118: lipoyltransferase activity1.60E-03
36GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.60E-03
37GO:0043425: bHLH transcription factor binding1.60E-03
38GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.60E-03
39GO:0070330: aromatase activity2.64E-03
40GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity2.64E-03
41GO:0070180: large ribosomal subunit rRNA binding2.64E-03
42GO:0005089: Rho guanyl-nucleotide exchange factor activity2.67E-03
43GO:0005262: calcium channel activity3.49E-03
44GO:0005524: ATP binding3.57E-03
45GO:0015189: L-lysine transmembrane transporter activity3.85E-03
46GO:0035529: NADH pyrophosphatase activity3.85E-03
47GO:0004072: aspartate kinase activity3.85E-03
48GO:0015175: neutral amino acid transmembrane transporter activity3.85E-03
49GO:0017172: cysteine dioxygenase activity3.85E-03
50GO:0015181: arginine transmembrane transporter activity3.85E-03
51GO:0047627: adenylylsulfatase activity3.85E-03
52GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.95E-03
53GO:0004845: uracil phosphoribosyltransferase activity5.20E-03
54GO:0004345: glucose-6-phosphate dehydrogenase activity5.20E-03
55GO:0008409: 5'-3' exonuclease activity5.20E-03
56GO:0080032: methyl jasmonate esterase activity5.20E-03
57GO:0019199: transmembrane receptor protein kinase activity5.20E-03
58GO:0046556: alpha-L-arabinofuranosidase activity5.20E-03
59GO:0015238: drug transmembrane transporter activity5.21E-03
60GO:0004372: glycine hydroxymethyltransferase activity6.69E-03
61GO:0016846: carbon-sulfur lyase activity6.69E-03
62GO:0004176: ATP-dependent peptidase activity6.69E-03
63GO:0018685: alkane 1-monooxygenase activity6.69E-03
64GO:0016773: phosphotransferase activity, alcohol group as acceptor6.69E-03
65GO:0030570: pectate lyase activity8.01E-03
66GO:0016829: lyase activity8.08E-03
67GO:0004605: phosphatidate cytidylyltransferase activity8.31E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity8.31E-03
69GO:0004709: MAP kinase kinase kinase activity8.31E-03
70GO:0016208: AMP binding8.31E-03
71GO:0016462: pyrophosphatase activity8.31E-03
72GO:0042578: phosphoric ester hydrolase activity8.31E-03
73GO:0008519: ammonium transmembrane transporter activity8.31E-03
74GO:0004124: cysteine synthase activity1.01E-02
75GO:0008195: phosphatidate phosphatase activity1.01E-02
76GO:0004849: uridine kinase activity1.01E-02
77GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.01E-02
78GO:0003730: mRNA 3'-UTR binding1.01E-02
79GO:0008536: Ran GTPase binding1.11E-02
80GO:0001085: RNA polymerase II transcription factor binding1.11E-02
81GO:0019899: enzyme binding1.19E-02
82GO:0003872: 6-phosphofructokinase activity1.19E-02
83GO:0004871: signal transducer activity1.44E-02
84GO:0000156: phosphorelay response regulator activity1.56E-02
85GO:0051015: actin filament binding1.56E-02
86GO:0008173: RNA methyltransferase activity1.60E-02
87GO:0005375: copper ion transmembrane transporter activity1.60E-02
88GO:0016759: cellulose synthase activity1.67E-02
89GO:0008889: glycerophosphodiester phosphodiesterase activity1.82E-02
90GO:0003747: translation release factor activity1.82E-02
91GO:0009672: auxin:proton symporter activity2.05E-02
92GO:0004713: protein tyrosine kinase activity2.29E-02
93GO:0016788: hydrolase activity, acting on ester bonds2.33E-02
94GO:0008327: methyl-CpG binding2.54E-02
95GO:0008794: arsenate reductase (glutaredoxin) activity2.54E-02
96GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.01E-02
97GO:0044212: transcription regulatory region DNA binding3.04E-02
98GO:0003725: double-stranded RNA binding3.07E-02
99GO:0010329: auxin efflux transmembrane transporter activity3.07E-02
100GO:0015266: protein channel activity3.07E-02
101GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.07E-02
102GO:0004089: carbonate dehydratase activity3.07E-02
103GO:0004252: serine-type endopeptidase activity3.19E-02
104GO:0008083: growth factor activity3.34E-02
105GO:0004712: protein serine/threonine/tyrosine kinase activity3.61E-02
106GO:0004970: ionotropic glutamate receptor activity3.63E-02
107GO:0005217: intracellular ligand-gated ion channel activity3.63E-02
108GO:0003887: DNA-directed DNA polymerase activity3.92E-02
109GO:0015297: antiporter activity3.95E-02
110GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting4.04E-02
111GO:0005385: zinc ion transmembrane transporter activity4.22E-02
112GO:0005528: FK506 binding4.22E-02
113GO:0003714: transcription corepressor activity4.22E-02
114GO:0004185: serine-type carboxypeptidase activity4.25E-02
115GO:0042803: protein homodimerization activity4.32E-02
116GO:0008017: microtubule binding4.42E-02
117GO:0015079: potassium ion transmembrane transporter activity4.52E-02
118GO:0008324: cation transmembrane transporter activity4.52E-02
119GO:0005345: purine nucleobase transmembrane transporter activity4.52E-02
120GO:0051537: 2 iron, 2 sulfur cluster binding4.59E-02
121GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding4.71E-02
122GO:0035251: UDP-glucosyltransferase activity4.84E-02
123GO:0033612: receptor serine/threonine kinase binding4.84E-02
124GO:0019706: protein-cysteine S-palmitoyltransferase activity4.84E-02
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Gene type



Gene DE type