Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G17330

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
2GO:1905157: positive regulation of photosynthesis0.00E+00
3GO:0006982: response to lipid hydroperoxide0.00E+00
4GO:2000469: negative regulation of peroxidase activity0.00E+00
5GO:0010335: response to non-ionic osmotic stress0.00E+00
6GO:0033494: ferulate metabolic process0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0090697: post-embryonic plant organ morphogenesis0.00E+00
9GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
10GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
11GO:0010143: cutin biosynthetic process2.86E-05
12GO:0006021: inositol biosynthetic process3.11E-05
13GO:0009904: chloroplast accumulation movement5.00E-05
14GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway7.36E-05
15GO:0009903: chloroplast avoidance movement1.02E-04
16GO:0007018: microtubule-based movement1.55E-04
17GO:0007155: cell adhesion1.73E-04
18GO:0046167: glycerol-3-phosphate biosynthetic process2.06E-04
19GO:1902458: positive regulation of stomatal opening2.06E-04
20GO:0010362: negative regulation of anion channel activity by blue light2.06E-04
21GO:0015969: guanosine tetraphosphate metabolic process2.06E-04
22GO:0031426: polycistronic mRNA processing2.06E-04
23GO:0043489: RNA stabilization2.06E-04
24GO:0010426: DNA methylation on cytosine within a CHH sequence2.06E-04
25GO:0006659: phosphatidylserine biosynthetic process2.06E-04
26GO:0015995: chlorophyll biosynthetic process3.89E-04
27GO:0010155: regulation of proton transport4.62E-04
28GO:1903426: regulation of reactive oxygen species biosynthetic process4.62E-04
29GO:0050667: homocysteine metabolic process4.62E-04
30GO:0042819: vitamin B6 biosynthetic process4.62E-04
31GO:0010541: acropetal auxin transport4.62E-04
32GO:0006650: glycerophospholipid metabolic process4.62E-04
33GO:0009637: response to blue light6.01E-04
34GO:2001295: malonyl-CoA biosynthetic process7.52E-04
35GO:0046621: negative regulation of organ growth7.52E-04
36GO:0000913: preprophase band assembly7.52E-04
37GO:0031022: nuclear migration along microfilament7.52E-04
38GO:0046168: glycerol-3-phosphate catabolic process7.52E-04
39GO:0010160: formation of animal organ boundary7.52E-04
40GO:0007017: microtubule-based process9.35E-04
41GO:0006166: purine ribonucleoside salvage1.07E-03
42GO:0010239: chloroplast mRNA processing1.07E-03
43GO:0043481: anthocyanin accumulation in tissues in response to UV light1.07E-03
44GO:0006072: glycerol-3-phosphate metabolic process1.07E-03
45GO:0008615: pyridoxine biosynthetic process1.07E-03
46GO:0006164: purine nucleotide biosynthetic process1.07E-03
47GO:1990019: protein storage vacuole organization1.07E-03
48GO:0006168: adenine salvage1.07E-03
49GO:0042823: pyridoxal phosphate biosynthetic process1.07E-03
50GO:0051322: anaphase1.43E-03
51GO:2000306: positive regulation of photomorphogenesis1.43E-03
52GO:0015994: chlorophyll metabolic process1.43E-03
53GO:0008295: spermidine biosynthetic process1.43E-03
54GO:0045489: pectin biosynthetic process1.66E-03
55GO:0006520: cellular amino acid metabolic process1.66E-03
56GO:0009646: response to absence of light1.78E-03
57GO:1902183: regulation of shoot apical meristem development1.81E-03
58GO:0044209: AMP salvage1.81E-03
59GO:0010158: abaxial cell fate specification1.81E-03
60GO:0006564: L-serine biosynthetic process1.81E-03
61GO:0045038: protein import into chloroplast thylakoid membrane1.81E-03
62GO:0009791: post-embryonic development1.91E-03
63GO:0008654: phospholipid biosynthetic process1.91E-03
64GO:0010583: response to cyclopentenone2.18E-03
65GO:0010405: arabinogalactan protein metabolic process2.24E-03
66GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.24E-03
67GO:0045962: positive regulation of development, heterochronic2.24E-03
68GO:0060918: auxin transport2.24E-03
69GO:0018258: protein O-linked glycosylation via hydroxyproline2.24E-03
70GO:0009228: thiamine biosynthetic process2.24E-03
71GO:0046855: inositol phosphate dephosphorylation2.24E-03
72GO:0009643: photosynthetic acclimation2.24E-03
73GO:0048280: vesicle fusion with Golgi apparatus2.69E-03
74GO:0030488: tRNA methylation2.69E-03
75GO:0000910: cytokinesis2.77E-03
76GO:0048437: floral organ development3.16E-03
77GO:0000122: negative regulation of transcription from RNA polymerase II promoter3.16E-03
78GO:0030307: positive regulation of cell growth3.16E-03
79GO:0006633: fatty acid biosynthetic process3.30E-03
80GO:0016559: peroxisome fission3.67E-03
81GO:2000070: regulation of response to water deprivation3.67E-03
82GO:0009932: cell tip growth4.20E-03
83GO:0015996: chlorophyll catabolic process4.20E-03
84GO:0007186: G-protein coupled receptor signaling pathway4.20E-03
85GO:0006811: ion transport4.21E-03
86GO:0048527: lateral root development4.42E-03
87GO:0051865: protein autoubiquitination4.75E-03
88GO:0010206: photosystem II repair4.75E-03
89GO:2000024: regulation of leaf development4.75E-03
90GO:0048507: meristem development4.75E-03
91GO:0006189: 'de novo' IMP biosynthetic process4.75E-03
92GO:0009638: phototropism5.32E-03
93GO:0009086: methionine biosynthetic process5.32E-03
94GO:0048354: mucilage biosynthetic process involved in seed coat development5.32E-03
95GO:0006631: fatty acid metabolic process5.75E-03
96GO:0043069: negative regulation of programmed cell death5.93E-03
97GO:0009641: shade avoidance5.93E-03
98GO:0010215: cellulose microfibril organization5.93E-03
99GO:0010192: mucilage biosynthetic process5.93E-03
100GO:0006896: Golgi to vacuole transport5.93E-03
101GO:0055114: oxidation-reduction process6.02E-03
102GO:0009744: response to sucrose6.23E-03
103GO:0000038: very long-chain fatty acid metabolic process6.55E-03
104GO:0018119: peptidyl-cysteine S-nitrosylation6.55E-03
105GO:0016485: protein processing6.55E-03
106GO:0008361: regulation of cell size7.20E-03
107GO:0006790: sulfur compound metabolic process7.20E-03
108GO:0016024: CDP-diacylglycerol biosynthetic process7.20E-03
109GO:0045037: protein import into chloroplast stroma7.20E-03
110GO:0009416: response to light stimulus7.44E-03
111GO:0030036: actin cytoskeleton organization7.87E-03
112GO:0009718: anthocyanin-containing compound biosynthetic process7.87E-03
113GO:0009725: response to hormone7.87E-03
114GO:0009767: photosynthetic electron transport chain7.87E-03
115GO:0030048: actin filament-based movement7.87E-03
116GO:0009785: blue light signaling pathway7.87E-03
117GO:0006006: glucose metabolic process7.87E-03
118GO:0009887: animal organ morphogenesis8.56E-03
119GO:0010540: basipetal auxin transport8.56E-03
120GO:0034605: cellular response to heat8.56E-03
121GO:0010207: photosystem II assembly8.56E-03
122GO:0010020: chloroplast fission8.56E-03
123GO:0019253: reductive pentose-phosphate cycle8.56E-03
124GO:0010223: secondary shoot formation8.56E-03
125GO:0006857: oligopeptide transport9.00E-03
126GO:0046854: phosphatidylinositol phosphorylation9.27E-03
127GO:0042343: indole glucosinolate metabolic process9.27E-03
128GO:0009825: multidimensional cell growth9.27E-03
129GO:0019853: L-ascorbic acid biosynthetic process9.27E-03
130GO:0044550: secondary metabolite biosynthetic process9.48E-03
131GO:0010025: wax biosynthetic process1.00E-02
132GO:0009944: polarity specification of adaxial/abaxial axis1.08E-02
133GO:0000027: ribosomal large subunit assembly1.08E-02
134GO:0080147: root hair cell development1.08E-02
135GO:0008299: isoprenoid biosynthetic process1.15E-02
136GO:0098542: defense response to other organism1.23E-02
137GO:0006396: RNA processing1.23E-02
138GO:0019915: lipid storage1.23E-02
139GO:0006306: DNA methylation1.23E-02
140GO:0016114: terpenoid biosynthetic process1.23E-02
141GO:0009742: brassinosteroid mediated signaling pathway1.27E-02
142GO:0009294: DNA mediated transformation1.40E-02
143GO:0071369: cellular response to ethylene stimulus1.40E-02
144GO:0048443: stamen development1.48E-02
145GO:0006817: phosphate ion transport1.48E-02
146GO:0019722: calcium-mediated signaling1.48E-02
147GO:0042147: retrograde transport, endosome to Golgi1.57E-02
148GO:0010182: sugar mediated signaling pathway1.75E-02
149GO:0009741: response to brassinosteroid1.75E-02
150GO:0009958: positive gravitropism1.75E-02
151GO:0010154: fruit development1.75E-02
152GO:0009651: response to salt stress1.87E-02
153GO:0006623: protein targeting to vacuole1.94E-02
154GO:0019252: starch biosynthetic process1.94E-02
155GO:0006891: intra-Golgi vesicle-mediated transport2.03E-02
156GO:0007623: circadian rhythm2.08E-02
157GO:0007264: small GTPase mediated signal transduction2.13E-02
158GO:0016032: viral process2.13E-02
159GO:0071555: cell wall organization2.15E-02
160GO:0030163: protein catabolic process2.23E-02
161GO:0009639: response to red or far red light2.33E-02
162GO:0010252: auxin homeostasis2.33E-02
163GO:0007267: cell-cell signaling2.43E-02
164GO:0010027: thylakoid membrane organization2.64E-02
165GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.75E-02
166GO:0006888: ER to Golgi vesicle-mediated transport2.97E-02
167GO:0016311: dephosphorylation3.08E-02
168GO:0030244: cellulose biosynthetic process3.19E-02
169GO:0018298: protein-chromophore linkage3.19E-02
170GO:0009658: chloroplast organization3.22E-02
171GO:0000160: phosphorelay signal transduction system3.31E-02
172GO:0010311: lateral root formation3.31E-02
173GO:0009409: response to cold3.36E-02
174GO:0006499: N-terminal protein myristoylation3.42E-02
175GO:0009407: toxin catabolic process3.42E-02
176GO:0010218: response to far red light3.42E-02
177GO:0007568: aging3.54E-02
178GO:0010119: regulation of stomatal movement3.54E-02
179GO:0009631: cold acclimation3.54E-02
180GO:0048366: leaf development3.78E-02
181GO:0045087: innate immune response3.78E-02
182GO:0016051: carbohydrate biosynthetic process3.78E-02
183GO:0046777: protein autophosphorylation4.25E-02
184GO:0009926: auxin polar transport4.52E-02
185GO:0009640: photomorphogenesis4.52E-02
186GO:0042546: cell wall biogenesis4.65E-02
187GO:0009636: response to toxic substance4.91E-02
188GO:0009965: leaf morphogenesis4.91E-02
RankGO TermAdjusted P value
1GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
2GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
3GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
4GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
5GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
6GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
7GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
8GO:0008017: microtubule binding8.98E-06
9GO:0000293: ferric-chelate reductase activity7.36E-05
10GO:0003777: microtubule motor activity1.79E-04
11GO:0010347: L-galactose-1-phosphate phosphatase activity2.06E-04
12GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.06E-04
13GO:0080132: fatty acid alpha-hydroxylase activity2.06E-04
14GO:0031957: very long-chain fatty acid-CoA ligase activity2.06E-04
15GO:0004328: formamidase activity2.06E-04
16GO:0080045: quercetin 3'-O-glucosyltransferase activity4.62E-04
17GO:0008705: methionine synthase activity4.62E-04
18GO:0004617: phosphoglycerate dehydrogenase activity4.62E-04
19GO:0004766: spermidine synthase activity4.62E-04
20GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity4.62E-04
21GO:0052832: inositol monophosphate 3-phosphatase activity4.62E-04
22GO:0008934: inositol monophosphate 1-phosphatase activity4.62E-04
23GO:0052833: inositol monophosphate 4-phosphatase activity4.62E-04
24GO:0004512: inositol-3-phosphate synthase activity4.62E-04
25GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity4.62E-04
26GO:0008728: GTP diphosphokinase activity4.62E-04
27GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.62E-04
28GO:0003871: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity4.62E-04
29GO:0048531: beta-1,3-galactosyltransferase activity4.62E-04
30GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity7.52E-04
31GO:0070402: NADPH binding7.52E-04
32GO:0004373: glycogen (starch) synthase activity7.52E-04
33GO:0050734: hydroxycinnamoyltransferase activity7.52E-04
34GO:0003913: DNA photolyase activity7.52E-04
35GO:0004075: biotin carboxylase activity7.52E-04
36GO:0048027: mRNA 5'-UTR binding1.07E-03
37GO:0003999: adenine phosphoribosyltransferase activity1.07E-03
38GO:0022890: inorganic cation transmembrane transporter activity1.07E-03
39GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.07E-03
40GO:0009882: blue light photoreceptor activity1.07E-03
41GO:0009011: starch synthase activity1.43E-03
42GO:0003989: acetyl-CoA carboxylase activity1.81E-03
43GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.24E-03
44GO:0080046: quercetin 4'-O-glucosyltransferase activity2.24E-03
45GO:1990714: hydroxyproline O-galactosyltransferase activity2.24E-03
46GO:0035673: oligopeptide transmembrane transporter activity2.24E-03
47GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.24E-03
48GO:0016757: transferase activity, transferring glycosyl groups2.42E-03
49GO:0016722: oxidoreductase activity, oxidizing metal ions2.62E-03
50GO:0005200: structural constituent of cytoskeleton2.62E-03
51GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.69E-03
52GO:0051753: mannan synthase activity2.69E-03
53GO:0102391: decanoate--CoA ligase activity2.69E-03
54GO:0003886: DNA (cytosine-5-)-methyltransferase activity2.69E-03
55GO:0009927: histidine phosphotransfer kinase activity2.69E-03
56GO:0016491: oxidoreductase activity3.04E-03
57GO:0004467: long-chain fatty acid-CoA ligase activity3.16E-03
58GO:0008173: RNA methyltransferase activity4.20E-03
59GO:0003993: acid phosphatase activity5.05E-03
60GO:0016887: ATPase activity6.06E-03
61GO:0015386: potassium:proton antiporter activity6.55E-03
62GO:0015198: oligopeptide transporter activity7.20E-03
63GO:0000976: transcription regulatory region sequence-specific DNA binding7.20E-03
64GO:0051287: NAD binding7.55E-03
65GO:0000155: phosphorelay sensor kinase activity7.87E-03
66GO:0004565: beta-galactosidase activity7.87E-03
67GO:0010329: auxin efflux transmembrane transporter activity7.87E-03
68GO:0008081: phosphoric diester hydrolase activity7.87E-03
69GO:0005315: inorganic phosphate transmembrane transporter activity7.87E-03
70GO:0003774: motor activity8.56E-03
71GO:0031624: ubiquitin conjugating enzyme binding8.56E-03
72GO:0042973: glucan endo-1,3-beta-D-glucosidase activity8.56E-03
73GO:0008266: poly(U) RNA binding8.56E-03
74GO:0008146: sulfotransferase activity9.27E-03
75GO:0042803: protein homodimerization activity1.14E-02
76GO:0015079: potassium ion transmembrane transporter activity1.15E-02
77GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.18E-02
78GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.32E-02
79GO:0030570: pectate lyase activity1.40E-02
80GO:0003924: GTPase activity1.40E-02
81GO:0005525: GTP binding1.58E-02
82GO:0016853: isomerase activity1.84E-02
83GO:0015299: solute:proton antiporter activity1.84E-02
84GO:0010181: FMN binding1.84E-02
85GO:0004872: receptor activity1.94E-02
86GO:0005506: iron ion binding2.10E-02
87GO:0016791: phosphatase activity2.33E-02
88GO:0016597: amino acid binding2.54E-02
89GO:0042802: identical protein binding2.64E-02
90GO:0008236: serine-type peptidase activity3.08E-02
91GO:0030145: manganese ion binding3.54E-02
92GO:0000149: SNARE binding4.02E-02
93GO:0030246: carbohydrate binding4.15E-02
94GO:0020037: heme binding4.19E-02
95GO:0052689: carboxylic ester hydrolase activity4.39E-02
96GO:0004364: glutathione transferase activity4.40E-02
97GO:0019825: oxygen binding4.45E-02
98GO:0004185: serine-type carboxypeptidase activity4.52E-02
99GO:0005484: SNAP receptor activity4.52E-02
100GO:0015293: symporter activity4.91E-02
101GO:0004871: signal transducer activity4.97E-02
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Gene type



Gene DE type