Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G17170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
6GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
7GO:0090071: negative regulation of ribosome biogenesis0.00E+00
8GO:0044249: cellular biosynthetic process0.00E+00
9GO:1903224: regulation of endodermal cell differentiation0.00E+00
10GO:0045184: establishment of protein localization0.00E+00
11GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
12GO:0009658: chloroplast organization3.10E-09
13GO:0009451: RNA modification5.95E-09
14GO:0042793: transcription from plastid promoter3.09E-08
15GO:0010239: chloroplast mRNA processing3.41E-07
16GO:0009657: plastid organization4.05E-07
17GO:1901259: chloroplast rRNA processing7.25E-06
18GO:0016556: mRNA modification5.66E-05
19GO:0009793: embryo development ending in seed dormancy2.04E-04
20GO:0006458: 'de novo' protein folding2.97E-04
21GO:0042026: protein refolding2.97E-04
22GO:0048437: floral organ development3.84E-04
23GO:0035987: endodermal cell differentiation4.10E-04
24GO:0006436: tryptophanyl-tRNA aminoacylation4.10E-04
25GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.10E-04
26GO:0006419: alanyl-tRNA aminoacylation4.10E-04
27GO:0042659: regulation of cell fate specification4.10E-04
28GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.10E-04
29GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.10E-04
30GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.10E-04
31GO:0070509: calcium ion import4.10E-04
32GO:0006438: valyl-tRNA aminoacylation4.10E-04
33GO:0090558: plant epidermis development4.10E-04
34GO:0010063: positive regulation of trichoblast fate specification4.10E-04
35GO:0010480: microsporocyte differentiation4.10E-04
36GO:0042371: vitamin K biosynthetic process4.10E-04
37GO:0009790: embryo development4.68E-04
38GO:0006353: DNA-templated transcription, termination4.80E-04
39GO:0008033: tRNA processing4.86E-04
40GO:0000902: cell morphogenesis7.02E-04
41GO:0000373: Group II intron splicing7.02E-04
42GO:0010583: response to cyclopentenone7.62E-04
43GO:1900865: chloroplast RNA modification8.29E-04
44GO:0001682: tRNA 5'-leader removal8.88E-04
45GO:2000123: positive regulation of stomatal complex development8.88E-04
46GO:0006420: arginyl-tRNA aminoacylation8.88E-04
47GO:0060359: response to ammonium ion8.88E-04
48GO:0048255: mRNA stabilization8.88E-04
49GO:1900871: chloroplast mRNA modification8.88E-04
50GO:1902326: positive regulation of chlorophyll biosynthetic process8.88E-04
51GO:0018026: peptidyl-lysine monomethylation8.88E-04
52GO:0009662: etioplast organization8.88E-04
53GO:0009220: pyrimidine ribonucleotide biosynthetic process8.88E-04
54GO:1904143: positive regulation of carotenoid biosynthetic process8.88E-04
55GO:0010027: thylakoid membrane organization1.11E-03
56GO:0045037: protein import into chloroplast stroma1.27E-03
57GO:0043157: response to cation stress1.44E-03
58GO:0005977: glycogen metabolic process1.44E-03
59GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.44E-03
60GO:0045910: negative regulation of DNA recombination1.44E-03
61GO:0048281: inflorescence morphogenesis1.44E-03
62GO:0090708: specification of plant organ axis polarity1.44E-03
63GO:0006954: inflammatory response1.44E-03
64GO:0042780: tRNA 3'-end processing1.44E-03
65GO:0001578: microtubule bundle formation1.44E-03
66GO:0010207: photosystem II assembly1.62E-03
67GO:1902476: chloride transmembrane transport2.08E-03
68GO:0010071: root meristem specification2.08E-03
69GO:0051513: regulation of monopolar cell growth2.08E-03
70GO:0010306: rhamnogalacturonan II biosynthetic process2.08E-03
71GO:0019048: modulation by virus of host morphology or physiology2.08E-03
72GO:0031048: chromatin silencing by small RNA2.08E-03
73GO:0010148: transpiration2.08E-03
74GO:0051302: regulation of cell division2.48E-03
75GO:0006418: tRNA aminoacylation for protein translation2.48E-03
76GO:0061077: chaperone-mediated protein folding2.73E-03
77GO:0016998: cell wall macromolecule catabolic process2.73E-03
78GO:0042274: ribosomal small subunit biogenesis2.80E-03
79GO:0051322: anaphase2.80E-03
80GO:0030104: water homeostasis2.80E-03
81GO:2000038: regulation of stomatal complex development2.80E-03
82GO:0051567: histone H3-K9 methylation2.80E-03
83GO:0044205: 'de novo' UMP biosynthetic process2.80E-03
84GO:0010021: amylopectin biosynthetic process2.80E-03
85GO:0006730: one-carbon metabolic process2.98E-03
86GO:0009107: lipoate biosynthetic process3.59E-03
87GO:0010158: abaxial cell fate specification3.59E-03
88GO:0010375: stomatal complex patterning3.59E-03
89GO:0009616: virus induced gene silencing3.59E-03
90GO:0010236: plastoquinone biosynthetic process3.59E-03
91GO:0048497: maintenance of floral organ identity3.59E-03
92GO:0009664: plant-type cell wall organization3.89E-03
93GO:0005975: carbohydrate metabolic process4.02E-03
94GO:0009959: negative gravitropism4.44E-03
95GO:0035194: posttranscriptional gene silencing by RNA4.44E-03
96GO:0009913: epidermal cell differentiation4.44E-03
97GO:0006655: phosphatidylglycerol biosynthetic process4.44E-03
98GO:0009228: thiamine biosynthetic process4.44E-03
99GO:0016458: gene silencing4.44E-03
100GO:0050665: hydrogen peroxide biosynthetic process4.44E-03
101GO:0048868: pollen tube development4.47E-03
102GO:0009854: oxidative photosynthetic carbon pathway5.35E-03
103GO:2000067: regulation of root morphogenesis5.35E-03
104GO:0019509: L-methionine salvage from methylthioadenosine5.35E-03
105GO:0042372: phylloquinone biosynthetic process5.35E-03
106GO:0009082: branched-chain amino acid biosynthetic process5.35E-03
107GO:0017148: negative regulation of translation5.35E-03
108GO:0009942: longitudinal axis specification5.35E-03
109GO:0009099: valine biosynthetic process5.35E-03
110GO:0032502: developmental process5.90E-03
111GO:0010103: stomatal complex morphogenesis6.32E-03
112GO:0006955: immune response6.32E-03
113GO:0048528: post-embryonic root development6.32E-03
114GO:0009772: photosynthetic electron transport in photosystem II6.32E-03
115GO:0006821: chloride transport6.32E-03
116GO:0070370: cellular heat acclimation6.32E-03
117GO:0010050: vegetative phase change6.32E-03
118GO:0010444: guard mother cell differentiation6.32E-03
119GO:0006400: tRNA modification6.32E-03
120GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.32E-03
121GO:0009828: plant-type cell wall loosening6.70E-03
122GO:0055075: potassium ion homeostasis7.35E-03
123GO:0048564: photosystem I assembly7.35E-03
124GO:0001522: pseudouridine synthesis7.35E-03
125GO:0009850: auxin metabolic process7.35E-03
126GO:0042255: ribosome assembly7.35E-03
127GO:0070413: trehalose metabolism in response to stress7.35E-03
128GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.43E-03
129GO:0071482: cellular response to light stimulus8.43E-03
130GO:0001558: regulation of cell growth8.43E-03
131GO:0009827: plant-type cell wall modification8.43E-03
132GO:0009097: isoleucine biosynthetic process8.43E-03
133GO:0006526: arginine biosynthetic process8.43E-03
134GO:0010204: defense response signaling pathway, resistance gene-independent8.43E-03
135GO:0007389: pattern specification process8.43E-03
136GO:0006098: pentose-phosphate shunt9.58E-03
137GO:0006783: heme biosynthetic process9.58E-03
138GO:0048481: plant ovule development1.05E-02
139GO:0006779: porphyrin-containing compound biosynthetic process1.08E-02
140GO:2000280: regulation of root development1.08E-02
141GO:0031425: chloroplast RNA processing1.08E-02
142GO:0045036: protein targeting to chloroplast1.20E-02
143GO:0006298: mismatch repair1.20E-02
144GO:0006259: DNA metabolic process1.20E-02
145GO:0006782: protoporphyrinogen IX biosynthetic process1.20E-02
146GO:0006535: cysteine biosynthetic process from serine1.20E-02
147GO:0019538: protein metabolic process1.20E-02
148GO:0030422: production of siRNA involved in RNA interference1.20E-02
149GO:0006265: DNA topological change1.33E-02
150GO:0009073: aromatic amino acid family biosynthetic process1.33E-02
151GO:0048229: gametophyte development1.33E-02
152GO:0016024: CDP-diacylglycerol biosynthetic process1.47E-02
153GO:0010582: floral meristem determinacy1.47E-02
154GO:0050826: response to freezing1.61E-02
155GO:0010075: regulation of meristem growth1.61E-02
156GO:0006094: gluconeogenesis1.61E-02
157GO:0009691: cytokinin biosynthetic process1.61E-02
158GO:0009934: regulation of meristem structural organization1.75E-02
159GO:0010020: chloroplast fission1.75E-02
160GO:0080188: RNA-directed DNA methylation1.90E-02
161GO:0071732: cellular response to nitric oxide1.90E-02
162GO:0090351: seedling development1.90E-02
163GO:0070588: calcium ion transmembrane transport1.90E-02
164GO:0009965: leaf morphogenesis1.93E-02
165GO:0006833: water transport2.05E-02
166GO:0006508: proteolysis2.05E-02
167GO:0005992: trehalose biosynthetic process2.21E-02
168GO:0019344: cysteine biosynthetic process2.21E-02
169GO:0009116: nucleoside metabolic process2.21E-02
170GO:0009944: polarity specification of adaxial/abaxial axis2.21E-02
171GO:0006364: rRNA processing2.32E-02
172GO:0019953: sexual reproduction2.37E-02
173GO:0051603: proteolysis involved in cellular protein catabolic process2.40E-02
174GO:0009734: auxin-activated signaling pathway2.41E-02
175GO:0015992: proton transport2.53E-02
176GO:0006306: DNA methylation2.53E-02
177GO:0016226: iron-sulfur cluster assembly2.70E-02
178GO:0007005: mitochondrion organization2.70E-02
179GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.87E-02
180GO:0071369: cellular response to ethylene stimulus2.87E-02
181GO:0001944: vasculature development2.87E-02
182GO:0042127: regulation of cell proliferation3.05E-02
183GO:0009553: embryo sac development3.21E-02
184GO:0016117: carotenoid biosynthetic process3.23E-02
185GO:0009416: response to light stimulus3.38E-02
186GO:0048653: anther development3.41E-02
187GO:0000226: microtubule cytoskeleton organization3.41E-02
188GO:0000413: protein peptidyl-prolyl isomerization3.41E-02
189GO:0006342: chromatin silencing3.60E-02
190GO:0009741: response to brassinosteroid3.60E-02
191GO:0006662: glycerol ether metabolic process3.60E-02
192GO:0010305: leaf vascular tissue pattern formation3.60E-02
193GO:0006814: sodium ion transport3.79E-02
194GO:0007059: chromosome segregation3.79E-02
195GO:0009646: response to absence of light3.79E-02
196GO:0048544: recognition of pollen3.79E-02
197GO:0009851: auxin biosynthetic process3.99E-02
198GO:0048825: cotyledon development3.99E-02
199GO:0019252: starch biosynthetic process3.99E-02
200GO:0008654: phospholipid biosynthetic process3.99E-02
201GO:0002229: defense response to oomycetes4.18E-02
202GO:0009630: gravitropism4.38E-02
203GO:0071281: cellular response to iron ion4.59E-02
204GO:0042744: hydrogen peroxide catabolic process4.69E-02
205GO:0006464: cellular protein modification process4.79E-02
206GO:0010252: auxin homeostasis4.79E-02
RankGO TermAdjusted P value
1GO:0015267: channel activity0.00E+00
2GO:0004358: glutamate N-acetyltransferase activity0.00E+00
3GO:0016018: cyclosporin A binding0.00E+00
4GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
5GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
6GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
7GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
8GO:0004418: hydroxymethylbilane synthase activity0.00E+00
9GO:0004056: argininosuccinate lyase activity0.00E+00
10GO:0004519: endonuclease activity8.18E-10
11GO:0003723: RNA binding4.22E-06
12GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.51E-06
13GO:0001872: (1->3)-beta-D-glucan binding5.66E-05
14GO:0005227: calcium activated cation channel activity4.10E-04
15GO:0042834: peptidoglycan binding4.10E-04
16GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.10E-04
17GO:0004813: alanine-tRNA ligase activity4.10E-04
18GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.10E-04
19GO:0052381: tRNA dimethylallyltransferase activity4.10E-04
20GO:0004160: dihydroxy-acid dehydratase activity4.10E-04
21GO:0004832: valine-tRNA ligase activity4.10E-04
22GO:0004830: tryptophan-tRNA ligase activity4.10E-04
23GO:0017118: lipoyltransferase activity8.88E-04
24GO:0004814: arginine-tRNA ligase activity8.88E-04
25GO:0016415: octanoyltransferase activity8.88E-04
26GO:0004047: aminomethyltransferase activity8.88E-04
27GO:0019156: isoamylase activity8.88E-04
28GO:0044183: protein binding involved in protein folding1.11E-03
29GO:0042781: 3'-tRNA processing endoribonuclease activity1.44E-03
30GO:0019843: rRNA binding1.81E-03
31GO:0043023: ribosomal large subunit binding2.08E-03
32GO:0008508: bile acid:sodium symporter activity2.08E-03
33GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.08E-03
34GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.08E-03
35GO:0009678: hydrogen-translocating pyrophosphatase activity2.08E-03
36GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.08E-03
37GO:0035197: siRNA binding2.08E-03
38GO:0004176: ATP-dependent peptidase activity2.73E-03
39GO:0004659: prenyltransferase activity2.80E-03
40GO:0016279: protein-lysine N-methyltransferase activity2.80E-03
41GO:0016836: hydro-lyase activity2.80E-03
42GO:0019199: transmembrane receptor protein kinase activity2.80E-03
43GO:0005253: anion channel activity2.80E-03
44GO:0042277: peptide binding2.80E-03
45GO:0004930: G-protein coupled receptor activity2.80E-03
46GO:0008891: glycolate oxidase activity2.80E-03
47GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.59E-03
48GO:0004888: transmembrane signaling receptor activity3.59E-03
49GO:0016773: phosphotransferase activity, alcohol group as acceptor3.59E-03
50GO:0004812: aminoacyl-tRNA ligase activity3.84E-03
51GO:0005247: voltage-gated chloride channel activity4.44E-03
52GO:0030983: mismatched DNA binding4.44E-03
53GO:0004605: phosphatidate cytidylyltransferase activity4.44E-03
54GO:0080030: methyl indole-3-acetate esterase activity4.44E-03
55GO:0004332: fructose-bisphosphate aldolase activity4.44E-03
56GO:0004526: ribonuclease P activity4.44E-03
57GO:0004556: alpha-amylase activity4.44E-03
58GO:0003690: double-stranded DNA binding4.45E-03
59GO:0004124: cysteine synthase activity5.35E-03
60GO:0008195: phosphatidate phosphatase activity5.35E-03
61GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.63E-03
62GO:0004650: polygalacturonase activity5.96E-03
63GO:0004427: inorganic diphosphatase activity6.32E-03
64GO:0003684: damaged DNA binding6.70E-03
65GO:0008237: metallopeptidase activity7.12E-03
66GO:0043022: ribosome binding7.35E-03
67GO:0016597: amino acid binding7.56E-03
68GO:0003724: RNA helicase activity8.43E-03
69GO:0008173: RNA methyltransferase activity8.43E-03
70GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity8.43E-03
71GO:0030247: polysaccharide binding9.44E-03
72GO:0009672: auxin:proton symporter activity1.08E-02
73GO:0004222: metalloendopeptidase activity1.16E-02
74GO:0004805: trehalose-phosphatase activity1.20E-02
75GO:0003993: acid phosphatase activity1.39E-02
76GO:0004521: endoribonuclease activity1.47E-02
77GO:0000049: tRNA binding1.47E-02
78GO:0051539: 4 iron, 4 sulfur cluster binding1.52E-02
79GO:0005262: calcium channel activity1.61E-02
80GO:0009982: pseudouridine synthase activity1.61E-02
81GO:0004565: beta-galactosidase activity1.61E-02
82GO:0010329: auxin efflux transmembrane transporter activity1.61E-02
83GO:0004185: serine-type carboxypeptidase activity1.72E-02
84GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.75E-02
85GO:0043621: protein self-association1.86E-02
86GO:0003887: DNA-directed DNA polymerase activity2.05E-02
87GO:0004601: peroxidase activity2.34E-02
88GO:0008408: 3'-5' exonuclease activity2.53E-02
89GO:0005525: GTP binding2.53E-02
90GO:0033612: receptor serine/threonine kinase binding2.53E-02
91GO:0016887: ATPase activity2.78E-02
92GO:0003727: single-stranded RNA binding3.05E-02
93GO:0047134: protein-disulfide reductase activity3.23E-02
94GO:0051082: unfolded protein binding3.31E-02
95GO:0004527: exonuclease activity3.60E-02
96GO:0005524: ATP binding3.78E-02
97GO:0004791: thioredoxin-disulfide reductase activity3.79E-02
98GO:0016853: isomerase activity3.79E-02
99GO:0010181: FMN binding3.79E-02
100GO:0019901: protein kinase binding3.99E-02
101GO:0016762: xyloglucan:xyloglucosyl transferase activity4.18E-02
102GO:0004518: nuclease activity4.38E-02
103GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.59E-02
104GO:0000156: phosphorelay response regulator activity4.59E-02
105GO:0016791: phosphatase activity4.79E-02
106GO:0003924: GTPase activity4.93E-02
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Gene type



Gene DE type