Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G16990

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009312: oligosaccharide biosynthetic process0.00E+00
2GO:0002764: immune response-regulating signaling pathway0.00E+00
3GO:0046680: response to DDT0.00E+00
4GO:0006983: ER overload response0.00E+00
5GO:0032491: detection of molecule of fungal origin0.00E+00
6GO:0051553: flavone biosynthetic process0.00E+00
7GO:0006497: protein lipidation0.00E+00
8GO:0032499: detection of peptidoglycan0.00E+00
9GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
10GO:0006654: phosphatidic acid biosynthetic process0.00E+00
11GO:0010647: positive regulation of cell communication0.00E+00
12GO:1902001: fatty acid transmembrane transport0.00E+00
13GO:0006216: cytidine catabolic process0.00E+00
14GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
15GO:0033198: response to ATP0.00E+00
16GO:0046109: uridine biosynthetic process0.00E+00
17GO:0006952: defense response6.87E-05
18GO:0002237: response to molecule of bacterial origin2.25E-04
19GO:0006486: protein glycosylation2.41E-04
20GO:0002238: response to molecule of fungal origin3.27E-04
21GO:0006468: protein phosphorylation3.48E-04
22GO:0007568: aging5.02E-04
23GO:0000032: cell wall mannoprotein biosynthetic process5.29E-04
24GO:0010045: response to nickel cation5.29E-04
25GO:0042759: long-chain fatty acid biosynthetic process5.29E-04
26GO:1903648: positive regulation of chlorophyll catabolic process5.29E-04
27GO:0042350: GDP-L-fucose biosynthetic process5.29E-04
28GO:0099132: ATP hydrolysis coupled cation transmembrane transport5.29E-04
29GO:0033306: phytol metabolic process5.29E-04
30GO:1902265: abscisic acid homeostasis5.29E-04
31GO:0007165: signal transduction5.42E-04
32GO:1900057: positive regulation of leaf senescence5.59E-04
33GO:0009819: drought recovery6.96E-04
34GO:0010204: defense response signaling pathway, resistance gene-independent8.48E-04
35GO:0010112: regulation of systemic acquired resistance1.01E-03
36GO:0010115: regulation of abscisic acid biosynthetic process1.14E-03
37GO:0015908: fatty acid transport1.14E-03
38GO:0002240: response to molecule of oomycetes origin1.14E-03
39GO:0043066: negative regulation of apoptotic process1.14E-03
40GO:0005976: polysaccharide metabolic process1.14E-03
41GO:0010042: response to manganese ion1.14E-03
42GO:0031349: positive regulation of defense response1.14E-03
43GO:0051258: protein polymerization1.14E-03
44GO:0010271: regulation of chlorophyll catabolic process1.14E-03
45GO:0060919: auxin influx1.14E-03
46GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine1.14E-03
47GO:0010541: acropetal auxin transport1.14E-03
48GO:0015012: heparan sulfate proteoglycan biosynthetic process1.14E-03
49GO:0071668: plant-type cell wall assembly1.14E-03
50GO:0080181: lateral root branching1.14E-03
51GO:0006024: glycosaminoglycan biosynthetic process1.14E-03
52GO:0055088: lipid homeostasis1.14E-03
53GO:1900426: positive regulation of defense response to bacterium1.19E-03
54GO:0010150: leaf senescence1.24E-03
55GO:0050832: defense response to fungus1.65E-03
56GO:0000266: mitochondrial fission1.84E-03
57GO:0010498: proteasomal protein catabolic process1.87E-03
58GO:0002230: positive regulation of defense response to virus by host1.87E-03
59GO:0016045: detection of bacterium1.87E-03
60GO:0010359: regulation of anion channel activity1.87E-03
61GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.87E-03
62GO:0033591: response to L-ascorbic acid1.87E-03
63GO:0015695: organic cation transport1.87E-03
64GO:1900055: regulation of leaf senescence1.87E-03
65GO:0034605: cellular response to heat2.37E-03
66GO:0015031: protein transport2.47E-03
67GO:0070588: calcium ion transmembrane transport2.66E-03
68GO:0010053: root epidermal cell differentiation2.66E-03
69GO:0010306: rhamnogalacturonan II biosynthetic process2.70E-03
70GO:0009226: nucleotide-sugar biosynthetic process2.70E-03
71GO:0015696: ammonium transport2.70E-03
72GO:0071323: cellular response to chitin2.70E-03
73GO:1902290: positive regulation of defense response to oomycetes2.70E-03
74GO:0046513: ceramide biosynthetic process2.70E-03
75GO:0046713: borate transport2.70E-03
76GO:0009298: GDP-mannose biosynthetic process2.70E-03
77GO:0002239: response to oomycetes2.70E-03
78GO:0030100: regulation of endocytosis2.70E-03
79GO:0009052: pentose-phosphate shunt, non-oxidative branch2.70E-03
80GO:0010043: response to zinc ion3.05E-03
81GO:2000377: regulation of reactive oxygen species metabolic process3.29E-03
82GO:0071219: cellular response to molecule of bacterial origin3.64E-03
83GO:0033356: UDP-L-arabinose metabolic process3.64E-03
84GO:0009687: abscisic acid metabolic process3.64E-03
85GO:0045227: capsule polysaccharide biosynthetic process3.64E-03
86GO:0045088: regulation of innate immune response3.64E-03
87GO:0072488: ammonium transmembrane transport3.64E-03
88GO:0033358: UDP-L-arabinose biosynthetic process3.64E-03
89GO:0042742: defense response to bacterium3.76E-03
90GO:0005513: detection of calcium ion4.67E-03
91GO:0016094: polyprenol biosynthetic process4.67E-03
92GO:0006465: signal peptide processing4.67E-03
93GO:0006886: intracellular protein transport5.70E-03
94GO:0010315: auxin efflux5.79E-03
95GO:0045491: xylan metabolic process5.79E-03
96GO:0033365: protein localization to organelle5.79E-03
97GO:0010337: regulation of salicylic acid metabolic process5.79E-03
98GO:0018258: protein O-linked glycosylation via hydroxyproline5.79E-03
99GO:0006574: valine catabolic process5.79E-03
100GO:0006014: D-ribose metabolic process5.79E-03
101GO:0009972: cytidine deamination5.79E-03
102GO:0010405: arabinogalactan protein metabolic process5.79E-03
103GO:0042391: regulation of membrane potential6.09E-03
104GO:0006470: protein dephosphorylation6.55E-03
105GO:0009612: response to mechanical stimulus6.99E-03
106GO:0031930: mitochondria-nucleus signaling pathway6.99E-03
107GO:0048509: regulation of meristem development6.99E-03
108GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response6.99E-03
109GO:0002229: defense response to oomycetes8.13E-03
110GO:0010038: response to metal ion8.28E-03
111GO:0046470: phosphatidylcholine metabolic process8.28E-03
112GO:1900056: negative regulation of leaf senescence8.28E-03
113GO:1900150: regulation of defense response to fungus9.64E-03
114GO:0009850: auxin metabolic process9.64E-03
115GO:0043068: positive regulation of programmed cell death9.64E-03
116GO:0016559: peroxisome fission9.64E-03
117GO:0009787: regulation of abscisic acid-activated signaling pathway9.64E-03
118GO:0009620: response to fungus9.74E-03
119GO:0010497: plasmodesmata-mediated intercellular transport1.11E-02
120GO:0006367: transcription initiation from RNA polymerase II promoter1.11E-02
121GO:0006997: nucleus organization1.11E-02
122GO:0009808: lignin metabolic process1.11E-02
123GO:0010208: pollen wall assembly1.11E-02
124GO:0019432: triglyceride biosynthetic process1.26E-02
125GO:0046916: cellular transition metal ion homeostasis1.26E-02
126GO:0009060: aerobic respiration1.26E-02
127GO:0006098: pentose-phosphate shunt1.26E-02
128GO:0048354: mucilage biosynthetic process involved in seed coat development1.42E-02
129GO:0010380: regulation of chlorophyll biosynthetic process1.42E-02
130GO:0016311: dephosphorylation1.47E-02
131GO:0030244: cellulose biosynthetic process1.55E-02
132GO:0016192: vesicle-mediated transport1.55E-02
133GO:0009817: defense response to fungus, incompatible interaction1.55E-02
134GO:0006032: chitin catabolic process1.58E-02
135GO:0043069: negative regulation of programmed cell death1.58E-02
136GO:0006499: N-terminal protein myristoylation1.71E-02
137GO:0043085: positive regulation of catalytic activity1.75E-02
138GO:0030148: sphingolipid biosynthetic process1.75E-02
139GO:0000038: very long-chain fatty acid metabolic process1.75E-02
140GO:0009682: induced systemic resistance1.75E-02
141GO:0045037: protein import into chloroplast stroma1.93E-02
142GO:0006790: sulfur compound metabolic process1.93E-02
143GO:0055046: microgametogenesis2.12E-02
144GO:0007034: vacuolar transport2.31E-02
145GO:0010540: basipetal auxin transport2.31E-02
146GO:0006897: endocytosis2.34E-02
147GO:0019853: L-ascorbic acid biosynthetic process2.50E-02
148GO:0010030: positive regulation of seed germination2.50E-02
149GO:0046854: phosphatidylinositol phosphorylation2.50E-02
150GO:0009225: nucleotide-sugar metabolic process2.50E-02
151GO:0010167: response to nitrate2.50E-02
152GO:0007166: cell surface receptor signaling pathway2.60E-02
153GO:0034976: response to endoplasmic reticulum stress2.70E-02
154GO:0009617: response to bacterium2.74E-02
155GO:0009863: salicylic acid mediated signaling pathway2.91E-02
156GO:0080147: root hair cell development2.91E-02
157GO:0051302: regulation of cell division3.12E-02
158GO:0003333: amino acid transmembrane transport3.34E-02
159GO:0016998: cell wall macromolecule catabolic process3.34E-02
160GO:0007005: mitochondrion organization3.56E-02
161GO:0071456: cellular response to hypoxia3.56E-02
162GO:0030245: cellulose catabolic process3.56E-02
163GO:0009814: defense response, incompatible interaction3.56E-02
164GO:0006012: galactose metabolic process3.79E-02
165GO:0006284: base-excision repair4.02E-02
166GO:0009561: megagametogenesis4.02E-02
167GO:0010584: pollen exine formation4.02E-02
168GO:0045492: xylan biosynthetic process4.02E-02
169GO:0007275: multicellular organism development4.16E-02
170GO:0070417: cellular response to cold4.26E-02
171GO:0000413: protein peptidyl-prolyl isomerization4.50E-02
172GO:0071472: cellular response to salt stress4.75E-02
173GO:0006662: glycerol ether metabolic process4.75E-02
174GO:0048544: recognition of pollen4.99E-02
175GO:0009646: response to absence of light4.99E-02
RankGO TermAdjusted P value
1GO:0043916: DNA-7-methylguanine glycosylase activity0.00E+00
2GO:0047844: deoxycytidine deaminase activity0.00E+00
3GO:0005212: structural constituent of eye lens0.00E+00
4GO:0052822: DNA-3-methylguanine glycosylase activity0.00E+00
5GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
6GO:2001080: chitosan binding0.00E+00
7GO:0034338: short-chain carboxylesterase activity0.00E+00
8GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
9GO:0052821: DNA-7-methyladenine glycosylase activity0.00E+00
10GO:0033759: flavone synthase activity0.00E+00
11GO:0003905: alkylbase DNA N-glycosylase activity0.00E+00
12GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
13GO:0016301: kinase activity1.82E-05
14GO:0008320: protein transmembrane transporter activity2.17E-05
15GO:0019199: transmembrane receptor protein kinase activity1.52E-04
16GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.32E-04
17GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.32E-04
18GO:0004476: mannose-6-phosphate isomerase activity5.29E-04
19GO:0019707: protein-cysteine S-acyltransferase activity5.29E-04
20GO:0015245: fatty acid transporter activity5.29E-04
21GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity5.29E-04
22GO:0004649: poly(ADP-ribose) glycohydrolase activity5.29E-04
23GO:0050577: GDP-L-fucose synthase activity5.29E-04
24GO:0004714: transmembrane receptor protein tyrosine kinase activity6.96E-04
25GO:0045140: inositol phosphoceramide synthase activity1.14E-03
26GO:0019779: Atg8 activating enzyme activity1.14E-03
27GO:0030775: glucuronoxylan 4-O-methyltransferase activity1.14E-03
28GO:0050291: sphingosine N-acyltransferase activity1.14E-03
29GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity1.14E-03
30GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity1.14E-03
31GO:0004713: protein tyrosine kinase activity1.39E-03
32GO:0004674: protein serine/threonine kinase activity1.58E-03
33GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.87E-03
34GO:0004751: ribose-5-phosphate isomerase activity1.87E-03
35GO:0000030: mannosyltransferase activity1.87E-03
36GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.87E-03
37GO:0016174: NAD(P)H oxidase activity1.87E-03
38GO:0000975: regulatory region DNA binding1.87E-03
39GO:0004806: triglyceride lipase activity2.22E-03
40GO:0030552: cAMP binding2.66E-03
41GO:0030553: cGMP binding2.66E-03
42GO:0010178: IAA-amino acid conjugate hydrolase activity2.70E-03
43GO:0005216: ion channel activity3.63E-03
44GO:0050373: UDP-arabinose 4-epimerase activity3.64E-03
45GO:0010328: auxin influx transmembrane transporter activity3.64E-03
46GO:0019706: protein-cysteine S-palmitoyltransferase activity3.99E-03
47GO:0002094: polyprenyltransferase activity4.67E-03
48GO:0004623: phospholipase A2 activity4.67E-03
49GO:0005496: steroid binding4.67E-03
50GO:0008725: DNA-3-methyladenine glycosylase activity4.67E-03
51GO:0010294: abscisic acid glucosyltransferase activity4.67E-03
52GO:0005102: receptor binding5.64E-03
53GO:0047714: galactolipase activity5.79E-03
54GO:0035252: UDP-xylosyltransferase activity5.79E-03
55GO:0008519: ammonium transmembrane transporter activity5.79E-03
56GO:1990714: hydroxyproline O-galactosyltransferase activity5.79E-03
57GO:0004871: signal transducer activity5.85E-03
58GO:0005249: voltage-gated potassium channel activity6.09E-03
59GO:0030551: cyclic nucleotide binding6.09E-03
60GO:0008194: UDP-glycosyltransferase activity6.33E-03
61GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.99E-03
62GO:0004747: ribokinase activity6.99E-03
63GO:0003978: UDP-glucose 4-epimerase activity6.99E-03
64GO:0004144: diacylglycerol O-acyltransferase activity6.99E-03
65GO:0051920: peroxiredoxin activity6.99E-03
66GO:0004126: cytidine deaminase activity6.99E-03
67GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.99E-03
68GO:0004672: protein kinase activity9.26E-03
69GO:0008865: fructokinase activity9.64E-03
70GO:0004708: MAP kinase kinase activity9.64E-03
71GO:0016209: antioxidant activity9.64E-03
72GO:0080043: quercetin 3-O-glucosyltransferase activity9.74E-03
73GO:0080044: quercetin 7-O-glucosyltransferase activity9.74E-03
74GO:0004630: phospholipase D activity1.11E-02
75GO:0008970: phosphatidylcholine 1-acylhydrolase activity1.11E-02
76GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity1.11E-02
77GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.26E-02
78GO:0008375: acetylglucosaminyltransferase activity1.32E-02
79GO:0030955: potassium ion binding1.42E-02
80GO:0004743: pyruvate kinase activity1.42E-02
81GO:0004568: chitinase activity1.58E-02
82GO:0008171: O-methyltransferase activity1.58E-02
83GO:0008047: enzyme activator activity1.58E-02
84GO:0015020: glucuronosyltransferase activity1.58E-02
85GO:0008559: xenobiotic-transporting ATPase activity1.75E-02
86GO:0015198: oligopeptide transporter activity1.93E-02
87GO:0008378: galactosyltransferase activity1.93E-02
88GO:0004842: ubiquitin-protein transferase activity2.04E-02
89GO:0010329: auxin efflux transmembrane transporter activity2.12E-02
90GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.12E-02
91GO:0005262: calcium channel activity2.12E-02
92GO:0005388: calcium-transporting ATPase activity2.12E-02
93GO:0004712: protein serine/threonine/tyrosine kinase activity2.15E-02
94GO:0004722: protein serine/threonine phosphatase activity2.16E-02
95GO:0008061: chitin binding2.50E-02
96GO:0004190: aspartic-type endopeptidase activity2.50E-02
97GO:0004725: protein tyrosine phosphatase activity2.70E-02
98GO:0003954: NADH dehydrogenase activity2.91E-02
99GO:0033612: receptor serine/threonine kinase binding3.34E-02
100GO:0008408: 3'-5' exonuclease activity3.34E-02
101GO:0005524: ATP binding3.66E-02
102GO:0004601: peroxidase activity3.78E-02
103GO:0008810: cellulase activity3.79E-02
104GO:0004499: N,N-dimethylaniline monooxygenase activity4.02E-02
105GO:0003756: protein disulfide isomerase activity4.02E-02
106GO:0043531: ADP binding4.24E-02
107GO:0047134: protein-disulfide reductase activity4.26E-02
108GO:0004527: exonuclease activity4.75E-02
109GO:0016887: ATPase activity4.86E-02
110GO:0050662: coenzyme binding4.99E-02
111GO:0004791: thioredoxin-disulfide reductase activity4.99E-02
112GO:0016853: isomerase activity4.99E-02
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Gene type



Gene DE type