co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0015843: methylammonium transport	0.00E+00
3	GO:0031222: arabinan catabolic process	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
6	GO:0035884: arabinan biosynthetic process	0.00E+00
7	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
8	GO:0051958: methotrexate transport	0.00E+00
9	GO:0045184: establishment of protein localization	0.00E+00
10	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
11	GO:0046620: regulation of organ growth	1.61E-11
12	GO:0009734: auxin-activated signaling pathway	6.23E-10
13	GO:0009733: response to auxin	4.40E-07
14	GO:0009926: auxin polar transport	5.69E-06
15	GO:0006760: folic acid-containing compound metabolic process	2.92E-05
16	GO:0009658: chloroplast organization	6.75E-05
17	GO:0046656: folic acid biosynthetic process	1.11E-04
18	GO:0009828: plant-type cell wall loosening	1.15E-04
19	GO:0040008: regulation of growth	1.27E-04
20	GO:0007275: multicellular organism development	1.61E-04
21	GO:0042793: transcription from plastid promoter	2.44E-04
22	GO:2000067: regulation of root morphogenesis	3.27E-04
23	GO:0046654: tetrahydrofolate biosynthetic process	3.27E-04
24	GO:0042371: vitamin K biosynthetic process	4.37E-04
25	GO:2000021: regulation of ion homeostasis	4.37E-04
26	GO:0035987: endodermal cell differentiation	4.37E-04
27	GO:0043609: regulation of carbon utilization	4.37E-04
28	GO:0006436: tryptophanyl-tRNA aminoacylation	4.37E-04
29	GO:0000066: mitochondrial ornithine transport	4.37E-04
30	GO:0050801: ion homeostasis	4.37E-04
31	GO:0042659: regulation of cell fate specification	4.37E-04
32	GO:0090558: plant epidermis development	4.37E-04
33	GO:0043266: regulation of potassium ion transport	4.37E-04
34	GO:0010480: microsporocyte differentiation	4.37E-04
35	GO:0006002: fructose 6-phosphate metabolic process	6.43E-04
36	GO:0000373: Group II intron splicing	7.70E-04
37	GO:0010583: response to cyclopentenone	8.59E-04
38	GO:1904143: positive regulation of carotenoid biosynthetic process	9.44E-04
39	GO:0006597: spermine biosynthetic process	9.44E-04
40	GO:1902326: positive regulation of chlorophyll biosynthetic process	9.44E-04
41	GO:0010569: regulation of double-strand break repair via homologous recombination	9.44E-04
42	GO:2000039: regulation of trichome morphogenesis	9.44E-04
43	GO:0018026: peptidyl-lysine monomethylation	9.44E-04
44	GO:0071497: cellular response to freezing	9.44E-04
45	GO:0099402: plant organ development	9.44E-04
46	GO:0042325: regulation of phosphorylation	9.44E-04
47	GO:0010015: root morphogenesis	1.21E-03
48	GO:0001578: microtubule bundle formation	1.54E-03
49	GO:0006557: S-adenosylmethioninamine biosynthetic process	1.54E-03
50	GO:0010447: response to acidic pH	1.54E-03
51	GO:0051127: positive regulation of actin nucleation	1.54E-03
52	GO:0090708: specification of plant organ axis polarity	1.54E-03
53	GO:0019419: sulfate reduction	1.54E-03
54	GO:0006000: fructose metabolic process	1.54E-03
55	GO:0010020: chloroplast fission	1.78E-03
56	GO:0043572: plastid fission	2.22E-03
57	GO:2001141: regulation of RNA biosynthetic process	2.22E-03
58	GO:1902476: chloride transmembrane transport	2.22E-03
59	GO:0051639: actin filament network formation	2.22E-03
60	GO:0044211: CTP salvage	2.22E-03
61	GO:0009226: nucleotide-sugar biosynthetic process	2.22E-03
62	GO:0015696: ammonium transport	2.22E-03
63	GO:0046739: transport of virus in multicellular host	2.22E-03
64	GO:2000904: regulation of starch metabolic process	2.22E-03
65	GO:0016556: mRNA modification	2.22E-03
66	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.50E-03
67	GO:0006346: methylation-dependent chromatin silencing	2.99E-03
68	GO:1901141: regulation of lignin biosynthetic process	2.99E-03
69	GO:0051764: actin crosslink formation	2.99E-03
70	GO:0051322: anaphase	2.99E-03
71	GO:0072488: ammonium transmembrane transport	2.99E-03
72	GO:0030104: water homeostasis	2.99E-03
73	GO:0008295: spermidine biosynthetic process	2.99E-03
74	GO:0044206: UMP salvage	2.99E-03
75	GO:0006306: DNA methylation	3.00E-03
76	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.58E-03
77	GO:1902183: regulation of shoot apical meristem development	3.83E-03
78	GO:0016123: xanthophyll biosynthetic process	3.83E-03
79	GO:0010438: cellular response to sulfur starvation	3.83E-03
80	GO:0010158: abaxial cell fate specification	3.83E-03
81	GO:0009904: chloroplast accumulation movement	3.83E-03
82	GO:0010236: plastoquinone biosynthetic process	3.83E-03
83	GO:0009664: plant-type cell wall organization	4.40E-03
84	GO:0010405: arabinogalactan protein metabolic process	4.74E-03
85	GO:0006655: phosphatidylglycerol biosynthetic process	4.74E-03
86	GO:0006206: pyrimidine nucleobase metabolic process	4.74E-03
87	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.74E-03
88	GO:0009741: response to brassinosteroid	4.92E-03
89	GO:0030488: tRNA methylation	5.72E-03
90	GO:0080086: stamen filament development	5.72E-03
91	GO:0042372: phylloquinone biosynthetic process	5.72E-03
92	GO:0009942: longitudinal axis specification	5.72E-03
93	GO:1901259: chloroplast rRNA processing	5.72E-03
94	GO:0009903: chloroplast avoidance movement	5.72E-03
95	GO:0009826: unidimensional cell growth	6.31E-03
96	GO:0031047: gene silencing by RNA	6.50E-03
97	GO:0009610: response to symbiotic fungus	6.76E-03
98	GO:0007050: cell cycle arrest	6.76E-03
99	GO:0009772: photosynthetic electron transport in photosystem II	6.76E-03
100	GO:0010050: vegetative phase change	6.76E-03
101	GO:0006821: chloride transport	6.76E-03
102	GO:0048437: floral organ development	6.76E-03
103	GO:0006400: tRNA modification	6.76E-03
104	GO:0030307: positive regulation of cell growth	6.76E-03
105	GO:1901657: glycosyl compound metabolic process	6.93E-03
106	GO:0010252: auxin homeostasis	7.38E-03
107	GO:0055075: potassium ion homeostasis	7.86E-03
108	GO:0000105: histidine biosynthetic process	7.86E-03
109	GO:0010439: regulation of glucosinolate biosynthetic process	7.86E-03
110	GO:0001522: pseudouridine synthesis	7.86E-03
111	GO:0009850: auxin metabolic process	7.86E-03
112	GO:0009704: de-etiolation	7.86E-03
113	GO:0009742: brassinosteroid mediated signaling pathway	8.14E-03
114	GO:0010027: thylakoid membrane organization	8.82E-03
115	GO:0007389: pattern specification process	9.03E-03
116	GO:0071482: cellular response to light stimulus	9.03E-03
117	GO:0010497: plasmodesmata-mediated intercellular transport	9.03E-03
118	GO:0009657: plastid organization	9.03E-03
119	GO:0006526: arginine biosynthetic process	9.03E-03
120	GO:2000024: regulation of leaf development	1.03E-02
121	GO:0010411: xyloglucan metabolic process	1.04E-02
122	GO:0009638: phototropism	1.15E-02
123	GO:0042761: very long-chain fatty acid biosynthetic process	1.15E-02
124	GO:2000280: regulation of root development	1.15E-02
125	GO:1900865: chloroplast RNA modification	1.15E-02
126	GO:0000160: phosphorelay signal transduction system	1.21E-02
127	GO:0006499: N-terminal protein myristoylation	1.27E-02
128	GO:0006949: syncytium formation	1.29E-02
129	GO:0006259: DNA metabolic process	1.29E-02
130	GO:0000103: sulfate assimilation	1.29E-02
131	GO:0048229: gametophyte development	1.43E-02
132	GO:0006265: DNA topological change	1.43E-02
133	GO:0009682: induced systemic resistance	1.43E-02
134	GO:1903507: negative regulation of nucleic acid-templated transcription	1.43E-02
135	GO:0006352: DNA-templated transcription, initiation	1.43E-02
136	GO:0009637: response to blue light	1.47E-02
137	GO:0016024: CDP-diacylglycerol biosynthetic process	1.57E-02
138	GO:0045037: protein import into chloroplast stroma	1.57E-02
139	GO:0010582: floral meristem determinacy	1.57E-02
140	GO:0006839: mitochondrial transport	1.67E-02
141	GO:0030036: actin cytoskeleton organization	1.72E-02
142	GO:0010075: regulation of meristem growth	1.72E-02
143	GO:0009767: photosynthetic electron transport chain	1.72E-02
144	GO:2000012: regulation of auxin polar transport	1.72E-02
145	GO:0009785: blue light signaling pathway	1.72E-02
146	GO:0009691: cytokinin biosynthetic process	1.72E-02
147	GO:0009934: regulation of meristem structural organization	1.87E-02
148	GO:0010207: photosystem II assembly	1.87E-02
149	GO:0010114: response to red light	1.90E-02
150	GO:0042546: cell wall biogenesis	1.97E-02
151	GO:0090351: seedling development	2.03E-02
152	GO:0010039: response to iron ion	2.03E-02
153	GO:0006071: glycerol metabolic process	2.20E-02
154	GO:0006833: water transport	2.20E-02
155	GO:0010025: wax biosynthetic process	2.20E-02
156	GO:0005992: trehalose biosynthetic process	2.36E-02
157	GO:0019344: cysteine biosynthetic process	2.36E-02
158	GO:0009944: polarity specification of adaxial/abaxial axis	2.36E-02
159	GO:0051017: actin filament bundle assembly	2.36E-02
160	GO:0051302: regulation of cell division	2.54E-02
161	GO:0019953: sexual reproduction	2.54E-02
162	GO:0006418: tRNA aminoacylation for protein translation	2.54E-02
163	GO:0009736: cytokinin-activated signaling pathway	2.56E-02
164	GO:0016998: cell wall macromolecule catabolic process	2.71E-02
165	GO:0031348: negative regulation of defense response	2.89E-02
166	GO:0019748: secondary metabolic process	2.89E-02
167	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.89E-02
168	GO:0006730: one-carbon metabolic process	2.89E-02
169	GO:0009625: response to insect	3.08E-02
170	GO:0010082: regulation of root meristem growth	3.08E-02
171	GO:0009686: gibberellin biosynthetic process	3.08E-02
172	GO:0010091: trichome branching	3.27E-02
173	GO:0080167: response to karrikin	3.45E-02
174	GO:0008033: tRNA processing	3.66E-02
175	GO:0048653: anther development	3.66E-02
176	GO:0000226: microtubule cytoskeleton organization	3.66E-02
177	GO:0080022: primary root development	3.66E-02
178	GO:0006342: chromatin silencing	3.86E-02
179	GO:0010268: brassinosteroid homeostasis	3.86E-02
180	GO:0006662: glycerol ether metabolic process	3.86E-02
181	GO:0009416: response to light stimulus	3.89E-02
182	GO:0007059: chromosome segregation	4.06E-02
183	GO:0009646: response to absence of light	4.06E-02
184	GO:0048544: recognition of pollen	4.06E-02
185	GO:0071555: cell wall organization	4.18E-02
186	GO:0008654: phospholipid biosynthetic process	4.27E-02
187	GO:0055072: iron ion homeostasis	4.27E-02
188	GO:0009851: auxin biosynthetic process	4.27E-02
189	GO:0016132: brassinosteroid biosynthetic process	4.48E-02
190	GO:0080156: mitochondrial mRNA modification	4.48E-02
191	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.48E-02
192	GO:0071554: cell wall organization or biogenesis	4.48E-02
193	GO:0032502: developmental process	4.69E-02
194	GO:0009058: biosynthetic process	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0015350: methotrexate transporter activity	0.00E+00
2	GO:0004056: argininosuccinate lyase activity	0.00E+00
3	GO:0004358: glutamate N-acetyltransferase activity	0.00E+00
4	GO:0015231: 5-formyltetrahydrofolate transporter activity	0.00E+00
5	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0102083: 7,8-dihydromonapterin aldolase activity	8.48E-06
9	GO:0004150: dihydroneopterin aldolase activity	8.48E-06
10	GO:0004830: tryptophan-tRNA ligase activity	4.37E-04
11	GO:0004400: histidinol-phosphate transaminase activity	4.37E-04
12	GO:0050139: nicotinate-N-glucosyltransferase activity	4.37E-04
13	GO:0051777: ent-kaurenoate oxidase activity	4.37E-04
14	GO:0005290: L-histidine transmembrane transporter activity	4.37E-04
15	GO:0003867: 4-aminobutyrate transaminase activity	4.37E-04
16	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	4.37E-04
17	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	4.37E-04
18	GO:0052381: tRNA dimethylallyltransferase activity	4.37E-04
19	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	9.44E-04
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	9.44E-04
21	GO:0009973: adenylyl-sulfate reductase activity	9.44E-04
22	GO:0008805: carbon-monoxide oxygenase activity	9.44E-04
23	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	9.44E-04
24	GO:0000064: L-ornithine transmembrane transporter activity	9.44E-04
25	GO:0008517: folic acid transporter activity	9.44E-04
26	GO:0004014: adenosylmethionine decarboxylase activity	1.54E-03
27	GO:0046524: sucrose-phosphate synthase activity	1.54E-03
28	GO:0070330: aromatase activity	1.54E-03
29	GO:0001872: (1->3)-beta-D-glucan binding	2.22E-03
30	GO:0015189: L-lysine transmembrane transporter activity	2.22E-03
31	GO:0015181: arginine transmembrane transporter activity	2.22E-03
32	GO:0046556: alpha-L-arabinofuranosidase activity	2.99E-03
33	GO:0004659: prenyltransferase activity	2.99E-03
34	GO:0016279: protein-lysine N-methyltransferase activity	2.99E-03
35	GO:0001053: plastid sigma factor activity	2.99E-03
36	GO:0004845: uracil phosphoribosyltransferase activity	2.99E-03
37	GO:0016987: sigma factor activity	2.99E-03
38	GO:0005253: anion channel activity	2.99E-03
39	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.83E-03
40	GO:0018685: alkane 1-monooxygenase activity	3.83E-03
41	GO:0008519: ammonium transmembrane transporter activity	4.74E-03
42	GO:0005247: voltage-gated chloride channel activity	4.74E-03
43	GO:2001070: starch binding	4.74E-03
44	GO:0004605: phosphatidate cytidylyltransferase activity	4.74E-03
45	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.74E-03
46	GO:0008195: phosphatidate phosphatase activity	5.72E-03
47	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.72E-03
48	GO:0004849: uridine kinase activity	5.72E-03
49	GO:0016762: xyloglucan:xyloglucosyl transferase activity	6.08E-03
50	GO:0003872: 6-phosphofructokinase activity	6.76E-03
51	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.93E-03
52	GO:0000156: phosphorelay response regulator activity	6.93E-03
53	GO:0008173: RNA methyltransferase activity	9.03E-03
54	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	9.03E-03
55	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.03E-02
56	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.04E-02
57	GO:0102483: scopolin beta-glucosidase activity	1.04E-02
58	GO:0009672: auxin:proton symporter activity	1.15E-02
59	GO:0004805: trehalose-phosphatase activity	1.29E-02
60	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.43E-02
61	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.47E-02
62	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.57E-02
63	GO:0008422: beta-glucosidase activity	1.60E-02
64	GO:0004089: carbonate dehydratase activity	1.72E-02
65	GO:0019888: protein phosphatase regulator activity	1.72E-02
66	GO:0009982: pseudouridine synthase activity	1.72E-02
67	GO:0010329: auxin efflux transmembrane transporter activity	1.72E-02
68	GO:0004022: alcohol dehydrogenase (NAD) activity	1.72E-02
69	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.87E-02
70	GO:0005215: transporter activity	1.89E-02
71	GO:0043621: protein self-association	2.05E-02
72	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.05E-02
73	GO:0003714: transcription corepressor activity	2.36E-02
74	GO:0005345: purine nucleobase transmembrane transporter activity	2.54E-02
75	GO:0008408: 3'-5' exonuclease activity	2.71E-02
76	GO:0004707: MAP kinase activity	2.71E-02
77	GO:0033612: receptor serine/threonine kinase binding	2.71E-02
78	GO:0003964: RNA-directed DNA polymerase activity	2.71E-02
79	GO:0047134: protein-disulfide reductase activity	3.46E-02
80	GO:0004812: aminoacyl-tRNA ligase activity	3.46E-02
81	GO:0004527: exonuclease activity	3.86E-02
82	GO:0008536: Ran GTPase binding	3.86E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	4.06E-02
84	GO:0010181: FMN binding	4.06E-02
85	GO:0004871: signal transducer activity	4.55E-02
86	GO:0051015: actin filament binding	4.91E-02