GO Enrichment Analysis of Co-expressed Genes with
AT3G16290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 2 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 5 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 6 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 7 | GO:0042407: cristae formation | 0.00E+00 |
| 8 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 9 | GO:0042793: transcription from plastid promoter | 4.65E-09 |
| 10 | GO:0009658: chloroplast organization | 1.58E-08 |
| 11 | GO:0009451: RNA modification | 9.69E-07 |
| 12 | GO:0009793: embryo development ending in seed dormancy | 5.63E-06 |
| 13 | GO:0009657: plastid organization | 6.18E-06 |
| 14 | GO:0009790: embryo development | 9.23E-05 |
| 15 | GO:0042026: protein refolding | 1.24E-04 |
| 16 | GO:0010063: positive regulation of trichoblast fate specification | 2.34E-04 |
| 17 | GO:0042371: vitamin K biosynthetic process | 2.34E-04 |
| 18 | GO:0000023: maltose metabolic process | 2.34E-04 |
| 19 | GO:0006419: alanyl-tRNA aminoacylation | 2.34E-04 |
| 20 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 2.34E-04 |
| 21 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 2.34E-04 |
| 22 | GO:0005980: glycogen catabolic process | 2.34E-04 |
| 23 | GO:0030198: extracellular matrix organization | 2.34E-04 |
| 24 | GO:0010027: thylakoid membrane organization | 3.96E-04 |
| 25 | GO:0006423: cysteinyl-tRNA aminoacylation | 5.20E-04 |
| 26 | GO:0007154: cell communication | 5.20E-04 |
| 27 | GO:0018026: peptidyl-lysine monomethylation | 5.20E-04 |
| 28 | GO:0042325: regulation of phosphorylation | 5.20E-04 |
| 29 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 5.20E-04 |
| 30 | GO:1904143: positive regulation of carotenoid biosynthetic process | 5.20E-04 |
| 31 | GO:0042550: photosystem I stabilization | 5.20E-04 |
| 32 | GO:0001682: tRNA 5'-leader removal | 5.20E-04 |
| 33 | GO:0006420: arginyl-tRNA aminoacylation | 5.20E-04 |
| 34 | GO:0060359: response to ammonium ion | 5.20E-04 |
| 35 | GO:0048255: mRNA stabilization | 5.20E-04 |
| 36 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.20E-04 |
| 37 | GO:0009629: response to gravity | 5.20E-04 |
| 38 | GO:0045037: protein import into chloroplast stroma | 5.76E-04 |
| 39 | GO:0001578: microtubule bundle formation | 8.44E-04 |
| 40 | GO:0043157: response to cation stress | 8.44E-04 |
| 41 | GO:0005977: glycogen metabolic process | 8.44E-04 |
| 42 | GO:0006164: purine nucleotide biosynthetic process | 1.20E-03 |
| 43 | GO:0016556: mRNA modification | 1.20E-03 |
| 44 | GO:2001141: regulation of RNA biosynthetic process | 1.20E-03 |
| 45 | GO:0010071: root meristem specification | 1.20E-03 |
| 46 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.20E-03 |
| 47 | GO:0010239: chloroplast mRNA processing | 1.20E-03 |
| 48 | GO:0010306: rhamnogalacturonan II biosynthetic process | 1.20E-03 |
| 49 | GO:0006730: one-carbon metabolic process | 1.33E-03 |
| 50 | GO:0007005: mitochondrion organization | 1.33E-03 |
| 51 | GO:0044205: 'de novo' UMP biosynthetic process | 1.61E-03 |
| 52 | GO:0010021: amylopectin biosynthetic process | 1.61E-03 |
| 53 | GO:0051322: anaphase | 1.61E-03 |
| 54 | GO:0006096: glycolytic process | 1.85E-03 |
| 55 | GO:0048868: pollen tube development | 1.97E-03 |
| 56 | GO:0010236: plastoquinone biosynthetic process | 2.05E-03 |
| 57 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 2.52E-03 |
| 58 | GO:0009416: response to light stimulus | 2.52E-03 |
| 59 | GO:0009959: negative gravitropism | 2.52E-03 |
| 60 | GO:0009630: gravitropism | 2.60E-03 |
| 61 | GO:0010583: response to cyclopentenone | 2.60E-03 |
| 62 | GO:1901259: chloroplast rRNA processing | 3.03E-03 |
| 63 | GO:0006458: 'de novo' protein folding | 3.03E-03 |
| 64 | GO:0017148: negative regulation of translation | 3.03E-03 |
| 65 | GO:0009942: longitudinal axis specification | 3.03E-03 |
| 66 | GO:0042372: phylloquinone biosynthetic process | 3.03E-03 |
| 67 | GO:0000910: cytokinesis | 3.31E-03 |
| 68 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 3.58E-03 |
| 69 | GO:0010444: guard mother cell differentiation | 3.58E-03 |
| 70 | GO:0006400: tRNA modification | 3.58E-03 |
| 71 | GO:0009772: photosynthetic electron transport in photosystem II | 3.58E-03 |
| 72 | GO:0048437: floral organ development | 3.58E-03 |
| 73 | GO:0006353: DNA-templated transcription, termination | 4.15E-03 |
| 74 | GO:0070413: trehalose metabolism in response to stress | 4.15E-03 |
| 75 | GO:0019375: galactolipid biosynthetic process | 4.15E-03 |
| 76 | GO:0009231: riboflavin biosynthetic process | 4.15E-03 |
| 77 | GO:0048564: photosystem I assembly | 4.15E-03 |
| 78 | GO:0006526: arginine biosynthetic process | 4.74E-03 |
| 79 | GO:0007389: pattern specification process | 4.74E-03 |
| 80 | GO:0009932: cell tip growth | 4.74E-03 |
| 81 | GO:0071482: cellular response to light stimulus | 4.74E-03 |
| 82 | GO:0000373: Group II intron splicing | 5.37E-03 |
| 83 | GO:0000902: cell morphogenesis | 5.37E-03 |
| 84 | GO:0006098: pentose-phosphate shunt | 5.37E-03 |
| 85 | GO:0043067: regulation of programmed cell death | 6.03E-03 |
| 86 | GO:0009098: leucine biosynthetic process | 6.03E-03 |
| 87 | GO:1900865: chloroplast RNA modification | 6.03E-03 |
| 88 | GO:0006535: cysteine biosynthetic process from serine | 6.71E-03 |
| 89 | GO:0045036: protein targeting to chloroplast | 6.71E-03 |
| 90 | GO:0006259: DNA metabolic process | 6.71E-03 |
| 91 | GO:0006265: DNA topological change | 7.43E-03 |
| 92 | GO:0006352: DNA-templated transcription, initiation | 7.43E-03 |
| 93 | GO:0010015: root morphogenesis | 7.43E-03 |
| 94 | GO:0010114: response to red light | 7.46E-03 |
| 95 | GO:0005983: starch catabolic process | 8.17E-03 |
| 96 | GO:0050826: response to freezing | 8.93E-03 |
| 97 | GO:0006094: gluconeogenesis | 8.93E-03 |
| 98 | GO:2000012: regulation of auxin polar transport | 8.93E-03 |
| 99 | GO:0010102: lateral root morphogenesis | 8.93E-03 |
| 100 | GO:0010207: photosystem II assembly | 9.72E-03 |
| 101 | GO:0010020: chloroplast fission | 9.72E-03 |
| 102 | GO:0090351: seedling development | 1.05E-02 |
| 103 | GO:0009969: xyloglucan biosynthetic process | 1.05E-02 |
| 104 | GO:0005992: trehalose biosynthetic process | 1.22E-02 |
| 105 | GO:0019344: cysteine biosynthetic process | 1.22E-02 |
| 106 | GO:0009116: nucleoside metabolic process | 1.22E-02 |
| 107 | GO:0019953: sexual reproduction | 1.31E-02 |
| 108 | GO:0016575: histone deacetylation | 1.31E-02 |
| 109 | GO:0031408: oxylipin biosynthetic process | 1.40E-02 |
| 110 | GO:0015992: proton transport | 1.40E-02 |
| 111 | GO:0061077: chaperone-mediated protein folding | 1.40E-02 |
| 112 | GO:0009409: response to cold | 1.46E-02 |
| 113 | GO:0016226: iron-sulfur cluster assembly | 1.50E-02 |
| 114 | GO:0009742: brassinosteroid mediated signaling pathway | 1.52E-02 |
| 115 | GO:0042127: regulation of cell proliferation | 1.69E-02 |
| 116 | GO:0008033: tRNA processing | 1.89E-02 |
| 117 | GO:0006606: protein import into nucleus | 1.89E-02 |
| 118 | GO:0000226: microtubule cytoskeleton organization | 1.89E-02 |
| 119 | GO:0010305: leaf vascular tissue pattern formation | 1.99E-02 |
| 120 | GO:0006662: glycerol ether metabolic process | 1.99E-02 |
| 121 | GO:0010197: polar nucleus fusion | 1.99E-02 |
| 122 | GO:0009741: response to brassinosteroid | 1.99E-02 |
| 123 | GO:0048544: recognition of pollen | 2.10E-02 |
| 124 | GO:0007059: chromosome segregation | 2.10E-02 |
| 125 | GO:0009646: response to absence of light | 2.10E-02 |
| 126 | GO:0019252: starch biosynthetic process | 2.20E-02 |
| 127 | GO:0009851: auxin biosynthetic process | 2.20E-02 |
| 128 | GO:0006508: proteolysis | 2.24E-02 |
| 129 | GO:0006633: fatty acid biosynthetic process | 2.27E-02 |
| 130 | GO:0032502: developmental process | 2.42E-02 |
| 131 | GO:0009828: plant-type cell wall loosening | 2.65E-02 |
| 132 | GO:0010252: auxin homeostasis | 2.65E-02 |
| 133 | GO:0009734: auxin-activated signaling pathway | 2.71E-02 |
| 134 | GO:0071805: potassium ion transmembrane transport | 2.77E-02 |
| 135 | GO:0001666: response to hypoxia | 3.01E-02 |
| 136 | GO:0009627: systemic acquired resistance | 3.25E-02 |
| 137 | GO:0010411: xyloglucan metabolic process | 3.38E-02 |
| 138 | GO:0015995: chlorophyll biosynthetic process | 3.38E-02 |
| 139 | GO:0008219: cell death | 3.63E-02 |
| 140 | GO:0048481: plant ovule development | 3.63E-02 |
| 141 | GO:0000160: phosphorelay signal transduction system | 3.76E-02 |
| 142 | GO:0006865: amino acid transport | 4.16E-02 |
| 143 | GO:0045087: innate immune response | 4.30E-02 |
| 144 | GO:0009637: response to blue light | 4.30E-02 |
| 145 | GO:0009853: photorespiration | 4.30E-02 |
| 146 | GO:0009867: jasmonic acid mediated signaling pathway | 4.30E-02 |
| 147 | GO:0034599: cellular response to oxidative stress | 4.43E-02 |
| 148 | GO:0080167: response to karrikin | 4.76E-02 |
| 149 | GO:0006457: protein folding | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
| 2 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
| 3 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 4 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 5 | GO:0004358: glutamate N-acetyltransferase activity | 0.00E+00 |
| 6 | GO:0005201: extracellular matrix structural constituent | 0.00E+00 |
| 7 | GO:0003937: IMP cyclohydrolase activity | 0.00E+00 |
| 8 | GO:0005363: maltose transmembrane transporter activity | 0.00E+00 |
| 9 | GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity | 0.00E+00 |
| 10 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 11 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 12 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 13 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.56E-06 |
| 14 | GO:0004519: endonuclease activity | 3.76E-06 |
| 15 | GO:0044183: protein binding involved in protein folding | 1.99E-05 |
| 16 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 2.11E-05 |
| 17 | GO:0003723: RNA binding | 2.25E-05 |
| 18 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 6.16E-05 |
| 19 | GO:0004645: phosphorylase activity | 2.34E-04 |
| 20 | GO:0046481: digalactosyldiacylglycerol synthase activity | 2.34E-04 |
| 21 | GO:0046480: galactolipid galactosyltransferase activity | 2.34E-04 |
| 22 | GO:0005227: calcium activated cation channel activity | 2.34E-04 |
| 23 | GO:0008184: glycogen phosphorylase activity | 2.34E-04 |
| 24 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 2.34E-04 |
| 25 | GO:0004813: alanine-tRNA ligase activity | 2.34E-04 |
| 26 | GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity | 2.34E-04 |
| 27 | GO:0019156: isoamylase activity | 5.20E-04 |
| 28 | GO:0003852: 2-isopropylmalate synthase activity | 5.20E-04 |
| 29 | GO:0004814: arginine-tRNA ligase activity | 5.20E-04 |
| 30 | GO:0004047: aminomethyltransferase activity | 5.20E-04 |
| 31 | GO:0004817: cysteine-tRNA ligase activity | 5.20E-04 |
| 32 | GO:0046524: sucrose-phosphate synthase activity | 8.44E-04 |
| 33 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 1.20E-03 |
| 34 | GO:0035250: UDP-galactosyltransferase activity | 1.20E-03 |
| 35 | GO:0016851: magnesium chelatase activity | 1.20E-03 |
| 36 | GO:0048487: beta-tubulin binding | 1.20E-03 |
| 37 | GO:0043023: ribosomal large subunit binding | 1.20E-03 |
| 38 | GO:0019201: nucleotide kinase activity | 1.20E-03 |
| 39 | GO:0004176: ATP-dependent peptidase activity | 1.21E-03 |
| 40 | GO:0004659: prenyltransferase activity | 1.61E-03 |
| 41 | GO:0016279: protein-lysine N-methyltransferase activity | 1.61E-03 |
| 42 | GO:0001053: plastid sigma factor activity | 1.61E-03 |
| 43 | GO:0016987: sigma factor activity | 1.61E-03 |
| 44 | GO:0045300: acyl-[acyl-carrier-protein] desaturase activity | 2.05E-03 |
| 45 | GO:0005275: amine transmembrane transporter activity | 2.05E-03 |
| 46 | GO:0004556: alpha-amylase activity | 2.52E-03 |
| 47 | GO:0004332: fructose-bisphosphate aldolase activity | 2.52E-03 |
| 48 | GO:0004526: ribonuclease P activity | 2.52E-03 |
| 49 | GO:0004017: adenylate kinase activity | 3.03E-03 |
| 50 | GO:0004124: cysteine synthase activity | 3.03E-03 |
| 51 | GO:0008195: phosphatidate phosphatase activity | 3.03E-03 |
| 52 | GO:0008237: metallopeptidase activity | 3.12E-03 |
| 53 | GO:0016597: amino acid binding | 3.31E-03 |
| 54 | GO:0004427: inorganic diphosphatase activity | 3.58E-03 |
| 55 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 4.74E-03 |
| 56 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 4.74E-03 |
| 57 | GO:0009672: auxin:proton symporter activity | 6.03E-03 |
| 58 | GO:0003993: acid phosphatase activity | 6.05E-03 |
| 59 | GO:0004805: trehalose-phosphatase activity | 6.71E-03 |
| 60 | GO:0043621: protein self-association | 8.08E-03 |
| 61 | GO:0000049: tRNA binding | 8.17E-03 |
| 62 | GO:0008378: galactosyltransferase activity | 8.17E-03 |
| 63 | GO:0010329: auxin efflux transmembrane transporter activity | 8.93E-03 |
| 64 | GO:0019888: protein phosphatase regulator activity | 8.93E-03 |
| 65 | GO:0004565: beta-galactosidase activity | 8.93E-03 |
| 66 | GO:0008266: poly(U) RNA binding | 9.72E-03 |
| 67 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.14E-02 |
| 68 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.14E-02 |
| 69 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.14E-02 |
| 70 | GO:0004407: histone deacetylase activity | 1.22E-02 |
| 71 | GO:0015079: potassium ion transmembrane transporter activity | 1.31E-02 |
| 72 | GO:0003964: RNA-directed DNA polymerase activity | 1.40E-02 |
| 73 | GO:0008408: 3'-5' exonuclease activity | 1.40E-02 |
| 74 | GO:0051082: unfolded protein binding | 1.44E-02 |
| 75 | GO:0003924: GTPase activity | 1.76E-02 |
| 76 | GO:0047134: protein-disulfide reductase activity | 1.79E-02 |
| 77 | GO:0019843: rRNA binding | 1.80E-02 |
| 78 | GO:0004527: exonuclease activity | 1.99E-02 |
| 79 | GO:0008536: Ran GTPase binding | 1.99E-02 |
| 80 | GO:0005525: GTP binding | 2.07E-02 |
| 81 | GO:0004791: thioredoxin-disulfide reductase activity | 2.10E-02 |
| 82 | GO:0008565: protein transporter activity | 2.16E-02 |
| 83 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.31E-02 |
| 84 | GO:0000156: phosphorelay response regulator activity | 2.54E-02 |
| 85 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.54E-02 |
| 86 | GO:0016791: phosphatase activity | 2.65E-02 |
| 87 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.77E-02 |
| 88 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.77E-02 |
| 89 | GO:0016887: ATPase activity | 3.05E-02 |
| 90 | GO:0042802: identical protein binding | 3.16E-02 |
| 91 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.38E-02 |
| 92 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.63E-02 |
| 93 | GO:0005096: GTPase activator activity | 3.76E-02 |
| 94 | GO:0004222: metalloendopeptidase activity | 3.89E-02 |
| 95 | GO:0003746: translation elongation factor activity | 4.30E-02 |
| 96 | GO:0005524: ATP binding | 4.77E-02 |
| 97 | GO:0003729: mRNA binding | 4.99E-02 |