Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G15095

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
2GO:0097164: ammonium ion metabolic process0.00E+00
3GO:0045184: establishment of protein localization0.00E+00
4GO:0015843: methylammonium transport0.00E+00
5GO:0031222: arabinan catabolic process0.00E+00
6GO:0070979: protein K11-linked ubiquitination0.00E+00
7GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
8GO:1905421: regulation of plant organ morphogenesis0.00E+00
9GO:0030155: regulation of cell adhesion0.00E+00
10GO:0009606: tropism0.00E+00
11GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
12GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
13GO:1903224: regulation of endodermal cell differentiation0.00E+00
14GO:0090071: negative regulation of ribosome biogenesis0.00E+00
15GO:0007638: mechanosensory behavior0.00E+00
16GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
17GO:0009734: auxin-activated signaling pathway1.44E-10
18GO:0046620: regulation of organ growth2.13E-10
19GO:0009733: response to auxin8.89E-09
20GO:0009926: auxin polar transport3.31E-07
21GO:0040008: regulation of growth3.05E-06
22GO:0009658: chloroplast organization2.04E-05
23GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.99E-05
24GO:0007389: pattern specification process9.71E-05
25GO:0009657: plastid organization9.71E-05
26GO:0000373: Group II intron splicing1.29E-04
27GO:0016556: mRNA modification1.54E-04
28GO:0009451: RNA modification1.86E-04
29GO:0032502: developmental process3.55E-04
30GO:0010252: auxin homeostasis4.36E-04
31GO:0042371: vitamin K biosynthetic process7.37E-04
32GO:0035987: endodermal cell differentiation7.37E-04
33GO:0006436: tryptophanyl-tRNA aminoacylation7.37E-04
34GO:0034080: CENP-A containing nucleosome assembly7.37E-04
35GO:0000066: mitochondrial ornithine transport7.37E-04
36GO:0034757: negative regulation of iron ion transport7.37E-04
37GO:0010729: positive regulation of hydrogen peroxide biosynthetic process7.37E-04
38GO:0051418: microtubule nucleation by microtubule organizing center7.37E-04
39GO:0070509: calcium ion import7.37E-04
40GO:0042659: regulation of cell fate specification7.37E-04
41GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process7.37E-04
42GO:0010063: positive regulation of trichoblast fate specification7.37E-04
43GO:0010480: microsporocyte differentiation7.37E-04
44GO:0090558: plant epidermis development7.37E-04
45GO:0010103: stomatal complex morphogenesis9.10E-04
46GO:0048437: floral organ development9.10E-04
47GO:0007275: multicellular organism development9.54E-04
48GO:0042255: ribosome assembly1.13E-03
49GO:0009220: pyrimidine ribonucleotide biosynthetic process1.59E-03
50GO:1904143: positive regulation of carotenoid biosynthetic process1.59E-03
51GO:0009786: regulation of asymmetric cell division1.59E-03
52GO:0006529: asparagine biosynthetic process1.59E-03
53GO:2000123: positive regulation of stomatal complex development1.59E-03
54GO:0070981: L-asparagine biosynthetic process1.59E-03
55GO:0033566: gamma-tubulin complex localization1.59E-03
56GO:0010271: regulation of chlorophyll catabolic process1.59E-03
57GO:0018026: peptidyl-lysine monomethylation1.59E-03
58GO:1902326: positive regulation of chlorophyll biosynthetic process1.59E-03
59GO:0071497: cellular response to freezing1.59E-03
60GO:1900033: negative regulation of trichome patterning1.59E-03
61GO:0000902: cell morphogenesis1.65E-03
62GO:0006508: proteolysis1.84E-03
63GO:0031425: chloroplast RNA processing1.96E-03
64GO:0006535: cysteine biosynthetic process from serine2.29E-03
65GO:0005975: carbohydrate metabolic process2.50E-03
66GO:0001578: microtubule bundle formation2.63E-03
67GO:0007052: mitotic spindle organization2.63E-03
68GO:0045910: negative regulation of DNA recombination2.63E-03
69GO:0080117: secondary growth2.63E-03
70GO:0048281: inflorescence morphogenesis2.63E-03
71GO:0006954: inflammatory response2.63E-03
72GO:0090708: specification of plant organ axis polarity2.63E-03
73GO:0031145: anaphase-promoting complex-dependent catabolic process2.63E-03
74GO:0009828: plant-type cell wall loosening2.74E-03
75GO:0006468: protein phosphorylation2.92E-03
76GO:0009767: photosynthetic electron transport chain3.47E-03
77GO:0043572: plastid fission3.83E-03
78GO:0031048: chromatin silencing by small RNA3.83E-03
79GO:0010148: transpiration3.83E-03
80GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center3.83E-03
81GO:0034508: centromere complex assembly3.83E-03
82GO:1902476: chloride transmembrane transport3.83E-03
83GO:0010071: root meristem specification3.83E-03
84GO:0051513: regulation of monopolar cell growth3.83E-03
85GO:0007231: osmosensory signaling pathway3.83E-03
86GO:0030071: regulation of mitotic metaphase/anaphase transition3.83E-03
87GO:0051639: actin filament network formation3.83E-03
88GO:0009226: nucleotide-sugar biosynthetic process3.83E-03
89GO:0010239: chloroplast mRNA processing3.83E-03
90GO:0015696: ammonium transport3.83E-03
91GO:0046739: transport of virus in multicellular host3.83E-03
92GO:0044211: CTP salvage3.83E-03
93GO:2000904: regulation of starch metabolic process3.83E-03
94GO:0019048: modulation by virus of host morphology or physiology3.83E-03
95GO:0090307: mitotic spindle assembly3.83E-03
96GO:0051289: protein homotetramerization3.83E-03
97GO:0010020: chloroplast fission3.92E-03
98GO:0010411: xyloglucan metabolic process4.25E-03
99GO:0070588: calcium ion transmembrane transport4.41E-03
100GO:0048481: plant ovule development4.85E-03
101GO:0071555: cell wall organization4.97E-03
102GO:0000160: phosphorelay signal transduction system5.17E-03
103GO:0051567: histone H3-K9 methylation5.18E-03
104GO:0044206: UMP salvage5.18E-03
105GO:1901141: regulation of lignin biosynthetic process5.18E-03
106GO:0048629: trichome patterning5.18E-03
107GO:0051764: actin crosslink formation5.18E-03
108GO:0030104: water homeostasis5.18E-03
109GO:0033500: carbohydrate homeostasis5.18E-03
110GO:0051322: anaphase5.18E-03
111GO:2000038: regulation of stomatal complex development5.18E-03
112GO:0072488: ammonium transmembrane transport5.18E-03
113GO:0044205: 'de novo' UMP biosynthetic process5.18E-03
114GO:0005992: trehalose biosynthetic process5.46E-03
115GO:0019344: cysteine biosynthetic process5.46E-03
116GO:0009944: polarity specification of adaxial/abaxial axis5.46E-03
117GO:0009742: brassinosteroid mediated signaling pathway5.50E-03
118GO:0051302: regulation of cell division6.04E-03
119GO:0016998: cell wall macromolecule catabolic process6.64E-03
120GO:0048497: maintenance of floral organ identity6.66E-03
121GO:0006544: glycine metabolic process6.66E-03
122GO:0009107: lipoate biosynthetic process6.66E-03
123GO:1902183: regulation of shoot apical meristem development6.66E-03
124GO:0016123: xanthophyll biosynthetic process6.66E-03
125GO:0010438: cellular response to sulfur starvation6.66E-03
126GO:0010158: abaxial cell fate specification6.66E-03
127GO:0032876: negative regulation of DNA endoreduplication6.66E-03
128GO:0010375: stomatal complex patterning6.66E-03
129GO:0009904: chloroplast accumulation movement6.66E-03
130GO:0010236: plastoquinone biosynthetic process6.66E-03
131GO:0009416: response to light stimulus6.79E-03
132GO:0006730: one-carbon metabolic process7.29E-03
133GO:0001944: vasculature development7.96E-03
134GO:0010082: regulation of root meristem growth7.96E-03
135GO:0009831: plant-type cell wall modification involved in multidimensional cell growth7.96E-03
136GO:0006206: pyrimidine nucleobase metabolic process8.27E-03
137GO:0018258: protein O-linked glycosylation via hydroxyproline8.27E-03
138GO:0006563: L-serine metabolic process8.27E-03
139GO:0009228: thiamine biosynthetic process8.27E-03
140GO:0010405: arabinogalactan protein metabolic process8.27E-03
141GO:0010304: PSII associated light-harvesting complex II catabolic process8.27E-03
142GO:0009913: epidermal cell differentiation8.27E-03
143GO:0006655: phosphatidylglycerol biosynthetic process8.27E-03
144GO:0042793: transcription from plastid promoter8.27E-03
145GO:0048831: regulation of shoot system development8.27E-03
146GO:0010315: auxin efflux8.27E-03
147GO:0016458: gene silencing8.27E-03
148GO:0009790: embryo development8.98E-03
149GO:0042546: cell wall biogenesis9.59E-03
150GO:0009903: chloroplast avoidance movement1.00E-02
151GO:0030488: tRNA methylation1.00E-02
152GO:1901259: chloroplast rRNA processing1.00E-02
153GO:0080086: stamen filament development1.00E-02
154GO:2000067: regulation of root morphogenesis1.00E-02
155GO:0042372: phylloquinone biosynthetic process1.00E-02
156GO:0017148: negative regulation of translation1.00E-02
157GO:0009942: longitudinal axis specification1.00E-02
158GO:0048509: regulation of meristem development1.00E-02
159GO:0010067: procambium histogenesis1.00E-02
160GO:0008033: tRNA processing1.02E-02
161GO:0010087: phloem or xylem histogenesis1.02E-02
162GO:0000226: microtubule cytoskeleton organization1.02E-02
163GO:0009741: response to brassinosteroid1.10E-02
164GO:0009646: response to absence of light1.18E-02
165GO:0030307: positive regulation of cell growth1.19E-02
166GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.19E-02
167GO:0009610: response to symbiotic fungus1.19E-02
168GO:0006955: immune response1.19E-02
169GO:0048528: post-embryonic root development1.19E-02
170GO:0009772: photosynthetic electron transport in photosystem II1.19E-02
171GO:0006821: chloride transport1.19E-02
172GO:0070370: cellular heat acclimation1.19E-02
173GO:0010444: guard mother cell differentiation1.19E-02
174GO:0010050: vegetative phase change1.19E-02
175GO:0009664: plant-type cell wall organization1.22E-02
176GO:0009736: cytokinin-activated signaling pathway1.34E-02
177GO:0009739: response to gibberellin1.38E-02
178GO:0006353: DNA-templated transcription, termination1.39E-02
179GO:0048766: root hair initiation1.39E-02
180GO:0070413: trehalose metabolism in response to stress1.39E-02
181GO:0055075: potassium ion homeostasis1.39E-02
182GO:0010439: regulation of glucosinolate biosynthetic process1.39E-02
183GO:0001522: pseudouridine synthesis1.39E-02
184GO:0009850: auxin metabolic process1.39E-02
185GO:0009704: de-etiolation1.39E-02
186GO:0032875: regulation of DNA endoreduplication1.39E-02
187GO:0007166: cell surface receptor signaling pathway1.42E-02
188GO:0010583: response to cyclopentenone1.46E-02
189GO:0010497: plasmodesmata-mediated intercellular transport1.59E-02
190GO:0001558: regulation of cell growth1.59E-02
191GO:0006002: fructose 6-phosphate metabolic process1.59E-02
192GO:0009827: plant-type cell wall modification1.59E-02
193GO:0006096: glycolytic process1.66E-02
194GO:0009051: pentose-phosphate shunt, oxidative branch1.81E-02
195GO:2000024: regulation of leaf development1.81E-02
196GO:0006098: pentose-phosphate shunt1.81E-02
197GO:0051607: defense response to virus1.87E-02
198GO:0001666: response to hypoxia1.98E-02
199GO:0048364: root development2.03E-02
200GO:0042761: very long-chain fatty acid biosynthetic process2.04E-02
201GO:2000280: regulation of root development2.04E-02
202GO:0009638: phototropism2.04E-02
203GO:0035999: tetrahydrofolate interconversion2.04E-02
204GO:1900865: chloroplast RNA modification2.04E-02
205GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway2.04E-02
206GO:0030422: production of siRNA involved in RNA interference2.28E-02
207GO:0048829: root cap development2.28E-02
208GO:0009641: shade avoidance2.28E-02
209GO:0006298: mismatch repair2.28E-02
210GO:0006949: syncytium formation2.28E-02
211GO:0006259: DNA metabolic process2.28E-02
212GO:0048229: gametophyte development2.53E-02
213GO:0010015: root morphogenesis2.53E-02
214GO:0006265: DNA topological change2.53E-02
215GO:0009089: lysine biosynthetic process via diaminopimelate2.53E-02
216GO:0006816: calcium ion transport2.53E-02
217GO:0009773: photosynthetic electron transport in photosystem I2.53E-02
218GO:0009682: induced systemic resistance2.53E-02
219GO:0016024: CDP-diacylglycerol biosynthetic process2.79E-02
220GO:0045037: protein import into chloroplast stroma2.79E-02
221GO:0010582: floral meristem determinacy2.79E-02
222GO:0009785: blue light signaling pathway3.05E-02
223GO:0009691: cytokinin biosynthetic process3.05E-02
224GO:0050826: response to freezing3.05E-02
225GO:0010075: regulation of meristem growth3.05E-02
226GO:0006094: gluconeogenesis3.05E-02
227GO:0010628: positive regulation of gene expression3.05E-02
228GO:2000012: regulation of auxin polar transport3.05E-02
229GO:0006006: glucose metabolic process3.05E-02
230GO:0080167: response to karrikin3.08E-02
231GO:0010223: secondary shoot formation3.33E-02
232GO:0009934: regulation of meristem structural organization3.33E-02
233GO:0006541: glutamine metabolic process3.33E-02
234GO:0006839: mitochondrial transport3.74E-02
235GO:0006071: glycerol metabolic process3.90E-02
236GO:0006833: water transport3.90E-02
237GO:0007623: circadian rhythm4.15E-02
238GO:0030150: protein import into mitochondrial matrix4.20E-02
239GO:0009116: nucleoside metabolic process4.20E-02
240GO:0080147: root hair cell development4.20E-02
241GO:0051017: actin filament bundle assembly4.20E-02
242GO:0010073: meristem maintenance4.50E-02
243GO:0006825: copper ion transport4.50E-02
244GO:0006418: tRNA aminoacylation for protein translation4.50E-02
245GO:0006306: DNA methylation4.81E-02
RankGO TermAdjusted P value
1GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0070009: serine-type aminopeptidase activity0.00E+00
4GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
5GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
6GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
7GO:0004519: endonuclease activity4.72E-05
8GO:0001872: (1->3)-beta-D-glucan binding1.54E-04
9GO:0009672: auxin:proton symporter activity1.67E-04
10GO:0019199: transmembrane receptor protein kinase activity2.59E-04
11GO:0010329: auxin efflux transmembrane transporter activity3.74E-04
12GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.82E-04
13GO:0004124: cysteine synthase activity7.14E-04
14GO:0004071: aspartate-ammonia ligase activity7.37E-04
15GO:0004830: tryptophan-tRNA ligase activity7.37E-04
16GO:0010285: L,L-diaminopimelate aminotransferase activity7.37E-04
17GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.37E-04
18GO:0052381: tRNA dimethylallyltransferase activity7.37E-04
19GO:0050139: nicotinate-N-glucosyltransferase activity7.37E-04
20GO:0051777: ent-kaurenoate oxidase activity7.37E-04
21GO:0042834: peptidoglycan binding7.37E-04
22GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.37E-04
23GO:0005290: L-histidine transmembrane transporter activity7.37E-04
24GO:0004008: copper-exporting ATPase activity7.37E-04
25GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity7.37E-04
26GO:0015929: hexosaminidase activity1.59E-03
27GO:0004563: beta-N-acetylhexosaminidase activity1.59E-03
28GO:0050017: L-3-cyanoalanine synthase activity1.59E-03
29GO:0017118: lipoyltransferase activity1.59E-03
30GO:0009884: cytokinin receptor activity1.59E-03
31GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.59E-03
32GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.59E-03
33GO:0016415: octanoyltransferase activity1.59E-03
34GO:0008805: carbon-monoxide oxygenase activity1.59E-03
35GO:0000064: L-ornithine transmembrane transporter activity1.59E-03
36GO:0019843: rRNA binding1.72E-03
37GO:0004674: protein serine/threonine kinase activity2.13E-03
38GO:0016762: xyloglucan:xyloglucosyl transferase activity2.14E-03
39GO:0004805: trehalose-phosphatase activity2.29E-03
40GO:0016805: dipeptidase activity2.63E-03
41GO:0005034: osmosensor activity2.63E-03
42GO:0032549: ribonucleoside binding2.63E-03
43GO:0070330: aromatase activity2.63E-03
44GO:0017150: tRNA dihydrouridine synthase activity2.63E-03
45GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity2.63E-03
46GO:0003723: RNA binding3.03E-03
47GO:0005262: calcium channel activity3.47E-03
48GO:0015181: arginine transmembrane transporter activity3.83E-03
49GO:0035197: siRNA binding3.83E-03
50GO:0043023: ribosomal large subunit binding3.83E-03
51GO:0015189: L-lysine transmembrane transporter activity3.83E-03
52GO:0017172: cysteine dioxygenase activity3.83E-03
53GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.92E-03
54GO:0016798: hydrolase activity, acting on glycosyl bonds4.25E-03
55GO:0004650: polygalacturonase activity4.37E-03
56GO:0046556: alpha-L-arabinofuranosidase activity5.18E-03
57GO:0004659: prenyltransferase activity5.18E-03
58GO:0016279: protein-lysine N-methyltransferase activity5.18E-03
59GO:0004845: uracil phosphoribosyltransferase activity5.18E-03
60GO:0004345: glucose-6-phosphate dehydrogenase activity5.18E-03
61GO:0043015: gamma-tubulin binding5.18E-03
62GO:0005253: anion channel activity5.18E-03
63GO:0042277: peptide binding5.18E-03
64GO:0004176: ATP-dependent peptidase activity6.64E-03
65GO:0070696: transmembrane receptor protein serine/threonine kinase binding6.66E-03
66GO:0008725: DNA-3-methyladenine glycosylase activity6.66E-03
67GO:0004372: glycine hydroxymethyltransferase activity6.66E-03
68GO:0018685: alkane 1-monooxygenase activity6.66E-03
69GO:0016829: lyase activity8.00E-03
70GO:0008519: ammonium transmembrane transporter activity8.27E-03
71GO:0005247: voltage-gated chloride channel activity8.27E-03
72GO:0030983: mismatched DNA binding8.27E-03
73GO:0004605: phosphatidate cytidylyltransferase activity8.27E-03
74GO:1990714: hydroxyproline O-galactosyltransferase activity8.27E-03
75GO:0004332: fructose-bisphosphate aldolase activity8.27E-03
76GO:0003727: single-stranded RNA binding8.67E-03
77GO:0019900: kinase binding1.00E-02
78GO:0008195: phosphatidate phosphatase activity1.00E-02
79GO:0004849: uridine kinase activity1.00E-02
80GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.00E-02
81GO:0004656: procollagen-proline 4-dioxygenase activity1.00E-02
82GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.04E-02
83GO:0003872: 6-phosphofructokinase activity1.19E-02
84GO:0043022: ribosome binding1.39E-02
85GO:0000156: phosphorelay response regulator activity1.55E-02
86GO:0005375: copper ion transmembrane transporter activity1.59E-02
87GO:0008173: RNA methyltransferase activity1.59E-02
88GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.59E-02
89GO:0008237: metallopeptidase activity1.76E-02
90GO:0008889: glycerophosphodiester phosphodiesterase activity1.81E-02
91GO:0005524: ATP binding1.87E-02
92GO:0004673: protein histidine kinase activity2.28E-02
93GO:0004713: protein tyrosine kinase activity2.28E-02
94GO:0030247: polysaccharide binding2.33E-02
95GO:0001054: RNA polymerase I activity2.53E-02
96GO:0005089: Rho guanyl-nucleotide exchange factor activity2.53E-02
97GO:0004521: endoribonuclease activity2.79E-02
98GO:0000976: transcription regulatory region sequence-specific DNA binding2.79E-02
99GO:0004222: metalloendopeptidase activity2.86E-02
100GO:0004672: protein kinase activity2.96E-02
101GO:0015266: protein channel activity3.05E-02
102GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.05E-02
103GO:0004089: carbonate dehydratase activity3.05E-02
104GO:0031072: heat shock protein binding3.05E-02
105GO:0000155: phosphorelay sensor kinase activity3.05E-02
106GO:0009982: pseudouridine synthase activity3.05E-02
107GO:0004022: alcohol dehydrogenase (NAD) activity3.05E-02
108GO:0004565: beta-galactosidase activity3.05E-02
109GO:0030170: pyridoxal phosphate binding3.17E-02
110GO:0004252: serine-type endopeptidase activity3.17E-02
111GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.28E-02
112GO:0005215: transporter activity3.67E-02
113GO:0042393: histone binding3.74E-02
114GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting4.00E-02
115GO:0031418: L-ascorbic acid binding4.20E-02
116GO:0004185: serine-type carboxypeptidase activity4.22E-02
117GO:0004871: signal transducer activity4.28E-02
118GO:0043424: protein histidine kinase binding4.50E-02
119GO:0005345: purine nucleobase transmembrane transporter activity4.50E-02
120GO:0043621: protein self-association4.56E-02
121GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding4.67E-02
122GO:0008408: 3'-5' exonuclease activity4.81E-02
123GO:0035251: UDP-glucosyltransferase activity4.81E-02
124GO:0033612: receptor serine/threonine kinase binding4.81E-02
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Gene type



Gene DE type