GO Enrichment Analysis of Co-expressed Genes with
AT3G14980
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 2 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 3 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 4 | GO:0034757: negative regulation of iron ion transport | 8.61E-05 |
| 5 | GO:0034970: histone H3-R2 methylation | 8.61E-05 |
| 6 | GO:0034972: histone H3-R26 methylation | 8.61E-05 |
| 7 | GO:1903866: palisade mesophyll development | 8.61E-05 |
| 8 | GO:0034971: histone H3-R17 methylation | 8.61E-05 |
| 9 | GO:0033206: meiotic cytokinesis | 8.61E-05 |
| 10 | GO:0009658: chloroplast organization | 1.88E-04 |
| 11 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 2.04E-04 |
| 12 | GO:0010254: nectary development | 2.04E-04 |
| 13 | GO:0009967: positive regulation of signal transduction | 2.04E-04 |
| 14 | GO:0010434: bract formation | 2.04E-04 |
| 15 | GO:0048439: flower morphogenesis | 2.04E-04 |
| 16 | GO:1902884: positive regulation of response to oxidative stress | 2.04E-04 |
| 17 | GO:0010271: regulation of chlorophyll catabolic process | 2.04E-04 |
| 18 | GO:0009909: regulation of flower development | 2.97E-04 |
| 19 | GO:0009954: proximal/distal pattern formation | 3.42E-04 |
| 20 | GO:0010476: gibberellin mediated signaling pathway | 3.42E-04 |
| 21 | GO:0071705: nitrogen compound transport | 3.42E-04 |
| 22 | GO:0080117: secondary growth | 3.42E-04 |
| 23 | GO:0090391: granum assembly | 3.42E-04 |
| 24 | GO:0010589: leaf proximal/distal pattern formation | 3.42E-04 |
| 25 | GO:0030029: actin filament-based process | 3.42E-04 |
| 26 | GO:0071215: cellular response to abscisic acid stimulus | 3.83E-04 |
| 27 | GO:0010501: RNA secondary structure unwinding | 4.86E-04 |
| 28 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 4.92E-04 |
| 29 | GO:1902290: positive regulation of defense response to oomycetes | 4.92E-04 |
| 30 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 4.92E-04 |
| 31 | GO:1900864: mitochondrial RNA modification | 6.55E-04 |
| 32 | GO:0071249: cellular response to nitrate | 6.55E-04 |
| 33 | GO:0035279: mRNA cleavage involved in gene silencing by miRNA | 6.55E-04 |
| 34 | GO:2000038: regulation of stomatal complex development | 6.55E-04 |
| 35 | GO:0010090: trichome morphogenesis | 7.28E-04 |
| 36 | GO:0032876: negative regulation of DNA endoreduplication | 8.29E-04 |
| 37 | GO:0030308: negative regulation of cell growth | 8.29E-04 |
| 38 | GO:0009616: virus induced gene silencing | 8.29E-04 |
| 39 | GO:0010029: regulation of seed germination | 9.62E-04 |
| 40 | GO:0042176: regulation of protein catabolic process | 1.01E-03 |
| 41 | GO:0042793: transcription from plastid promoter | 1.01E-03 |
| 42 | GO:0048831: regulation of shoot system development | 1.01E-03 |
| 43 | GO:2000037: regulation of stomatal complex patterning | 1.20E-03 |
| 44 | GO:0000911: cytokinesis by cell plate formation | 1.20E-03 |
| 45 | GO:2000033: regulation of seed dormancy process | 1.20E-03 |
| 46 | GO:1901259: chloroplast rRNA processing | 1.20E-03 |
| 47 | GO:0048509: regulation of meristem development | 1.20E-03 |
| 48 | GO:0006955: immune response | 1.41E-03 |
| 49 | GO:0035196: production of miRNAs involved in gene silencing by miRNA | 1.41E-03 |
| 50 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 1.41E-03 |
| 51 | GO:0006970: response to osmotic stress | 1.54E-03 |
| 52 | GO:0030162: regulation of proteolysis | 1.63E-03 |
| 53 | GO:0042255: ribosome assembly | 1.63E-03 |
| 54 | GO:0006353: DNA-templated transcription, termination | 1.63E-03 |
| 55 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 1.63E-03 |
| 56 | GO:0010093: specification of floral organ identity | 1.86E-03 |
| 57 | GO:0009827: plant-type cell wall modification | 1.86E-03 |
| 58 | GO:0001510: RNA methylation | 1.86E-03 |
| 59 | GO:0006261: DNA-dependent DNA replication | 1.86E-03 |
| 60 | GO:0007389: pattern specification process | 1.86E-03 |
| 61 | GO:0000373: Group II intron splicing | 2.10E-03 |
| 62 | GO:1900426: positive regulation of defense response to bacterium | 2.35E-03 |
| 63 | GO:0006349: regulation of gene expression by genetic imprinting | 2.35E-03 |
| 64 | GO:0016571: histone methylation | 2.35E-03 |
| 65 | GO:0016573: histone acetylation | 2.35E-03 |
| 66 | GO:0010048: vernalization response | 2.61E-03 |
| 67 | GO:0030422: production of siRNA involved in RNA interference | 2.61E-03 |
| 68 | GO:0048765: root hair cell differentiation | 2.87E-03 |
| 69 | GO:0008361: regulation of cell size | 3.15E-03 |
| 70 | GO:0010582: floral meristem determinacy | 3.15E-03 |
| 71 | GO:0015706: nitrate transport | 3.15E-03 |
| 72 | GO:0010102: lateral root morphogenesis | 3.43E-03 |
| 73 | GO:0009266: response to temperature stimulus | 3.73E-03 |
| 74 | GO:0010020: chloroplast fission | 3.73E-03 |
| 75 | GO:0006270: DNA replication initiation | 3.73E-03 |
| 76 | GO:0010167: response to nitrate | 4.03E-03 |
| 77 | GO:0009863: salicylic acid mediated signaling pathway | 4.65E-03 |
| 78 | GO:0006338: chromatin remodeling | 4.65E-03 |
| 79 | GO:0010187: negative regulation of seed germination | 4.65E-03 |
| 80 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.65E-03 |
| 81 | GO:2000377: regulation of reactive oxygen species metabolic process | 4.65E-03 |
| 82 | GO:0009845: seed germination | 4.85E-03 |
| 83 | GO:0016998: cell wall macromolecule catabolic process | 5.32E-03 |
| 84 | GO:0006355: regulation of transcription, DNA-templated | 5.69E-03 |
| 85 | GO:0010227: floral organ abscission | 6.01E-03 |
| 86 | GO:0009416: response to light stimulus | 6.22E-03 |
| 87 | GO:0006284: base-excision repair | 6.36E-03 |
| 88 | GO:0010228: vegetative to reproductive phase transition of meristem | 6.47E-03 |
| 89 | GO:0070417: cellular response to cold | 6.73E-03 |
| 90 | GO:0042631: cellular response to water deprivation | 7.10E-03 |
| 91 | GO:0042335: cuticle development | 7.10E-03 |
| 92 | GO:0000271: polysaccharide biosynthetic process | 7.10E-03 |
| 93 | GO:0010087: phloem or xylem histogenesis | 7.10E-03 |
| 94 | GO:0009960: endosperm development | 7.48E-03 |
| 95 | GO:0045489: pectin biosynthetic process | 7.48E-03 |
| 96 | GO:0010305: leaf vascular tissue pattern formation | 7.48E-03 |
| 97 | GO:0046323: glucose import | 7.48E-03 |
| 98 | GO:0009749: response to glucose | 8.26E-03 |
| 99 | GO:0080156: mitochondrial mRNA modification | 8.66E-03 |
| 100 | GO:0032502: developmental process | 9.07E-03 |
| 101 | GO:0010252: auxin homeostasis | 9.91E-03 |
| 102 | GO:0010027: thylakoid membrane organization | 1.12E-02 |
| 103 | GO:0009793: embryo development ending in seed dormancy | 1.22E-02 |
| 104 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.23E-02 |
| 105 | GO:0000160: phosphorelay signal transduction system | 1.40E-02 |
| 106 | GO:0010218: response to far red light | 1.45E-02 |
| 107 | GO:0009414: response to water deprivation | 1.48E-02 |
| 108 | GO:0009910: negative regulation of flower development | 1.50E-02 |
| 109 | GO:0009867: jasmonic acid mediated signaling pathway | 1.60E-02 |
| 110 | GO:0016051: carbohydrate biosynthetic process | 1.60E-02 |
| 111 | GO:0006397: mRNA processing | 1.83E-02 |
| 112 | GO:0048364: root development | 1.83E-02 |
| 113 | GO:0006351: transcription, DNA-templated | 1.87E-02 |
| 114 | GO:0008283: cell proliferation | 1.92E-02 |
| 115 | GO:0009926: auxin polar transport | 1.92E-02 |
| 116 | GO:0009636: response to toxic substance | 2.08E-02 |
| 117 | GO:0009965: leaf morphogenesis | 2.08E-02 |
| 118 | GO:0009651: response to salt stress | 2.13E-02 |
| 119 | GO:0031347: regulation of defense response | 2.19E-02 |
| 120 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 2.19E-02 |
| 121 | GO:0006260: DNA replication | 2.19E-02 |
| 122 | GO:0042538: hyperosmotic salinity response | 2.25E-02 |
| 123 | GO:0009736: cytokinin-activated signaling pathway | 2.37E-02 |
| 124 | GO:0006417: regulation of translation | 2.55E-02 |
| 125 | GO:0006096: glycolytic process | 2.67E-02 |
| 126 | GO:0016569: covalent chromatin modification | 2.92E-02 |
| 127 | GO:0009740: gibberellic acid mediated signaling pathway | 2.92E-02 |
| 128 | GO:0006396: RNA processing | 3.11E-02 |
| 129 | GO:0009058: biosynthetic process | 3.71E-02 |
| 130 | GO:0009790: embryo development | 3.99E-02 |
| 131 | GO:0009451: RNA modification | 4.56E-02 |
| 132 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.86E-02 |
| 133 | GO:0009739: response to gibberellin | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity | 0.00E+00 |
| 2 | GO:0004016: adenylate cyclase activity | 8.61E-05 |
| 3 | GO:0042834: peptidoglycan binding | 8.61E-05 |
| 4 | GO:0005078: MAP-kinase scaffold activity | 2.04E-04 |
| 5 | GO:0009884: cytokinin receptor activity | 2.04E-04 |
| 6 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 2.04E-04 |
| 7 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 2.04E-04 |
| 8 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 2.04E-04 |
| 9 | GO:0070180: large ribosomal subunit rRNA binding | 3.42E-04 |
| 10 | GO:0008469: histone-arginine N-methyltransferase activity | 3.42E-04 |
| 11 | GO:0032947: protein complex scaffold | 3.42E-04 |
| 12 | GO:0070181: small ribosomal subunit rRNA binding | 3.42E-04 |
| 13 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 3.42E-04 |
| 14 | GO:0005034: osmosensor activity | 3.42E-04 |
| 15 | GO:0004871: signal transducer activity | 3.87E-04 |
| 16 | GO:0003727: single-stranded RNA binding | 4.16E-04 |
| 17 | GO:0005354: galactose transmembrane transporter activity | 4.92E-04 |
| 18 | GO:0008725: DNA-3-methyladenine glycosylase activity | 8.29E-04 |
| 19 | GO:0003723: RNA binding | 9.20E-04 |
| 20 | GO:0003688: DNA replication origin binding | 1.01E-03 |
| 21 | GO:0004004: ATP-dependent RNA helicase activity | 1.07E-03 |
| 22 | GO:0019900: kinase binding | 1.20E-03 |
| 23 | GO:0003697: single-stranded DNA binding | 1.48E-03 |
| 24 | GO:0008173: RNA methyltransferase activity | 1.86E-03 |
| 25 | GO:0000989: transcription factor activity, transcription factor binding | 2.10E-03 |
| 26 | GO:0009672: auxin:proton symporter activity | 2.35E-03 |
| 27 | GO:0008171: O-methyltransferase activity | 2.61E-03 |
| 28 | GO:0004673: protein histidine kinase activity | 2.61E-03 |
| 29 | GO:0003690: double-stranded DNA binding | 2.62E-03 |
| 30 | GO:0000155: phosphorelay sensor kinase activity | 3.43E-03 |
| 31 | GO:0009982: pseudouridine synthase activity | 3.43E-03 |
| 32 | GO:0010329: auxin efflux transmembrane transporter activity | 3.43E-03 |
| 33 | GO:0008026: ATP-dependent helicase activity | 3.81E-03 |
| 34 | GO:0043424: protein histidine kinase binding | 4.98E-03 |
| 35 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 5.66E-03 |
| 36 | GO:0018024: histone-lysine N-methyltransferase activity | 6.73E-03 |
| 37 | GO:0008080: N-acetyltransferase activity | 7.48E-03 |
| 38 | GO:0004527: exonuclease activity | 7.48E-03 |
| 39 | GO:0005355: glucose transmembrane transporter activity | 7.87E-03 |
| 40 | GO:0005200: structural constituent of cytoskeleton | 1.03E-02 |
| 41 | GO:0016298: lipase activity | 2.43E-02 |
| 42 | GO:0031625: ubiquitin protein ligase binding | 2.55E-02 |
| 43 | GO:0003677: DNA binding | 2.59E-02 |
| 44 | GO:0016887: ATPase activity | 2.73E-02 |
| 45 | GO:0004650: polygalacturonase activity | 2.85E-02 |
| 46 | GO:0016874: ligase activity | 2.92E-02 |
| 47 | GO:0016758: transferase activity, transferring hexosyl groups | 3.50E-02 |
| 48 | GO:0019843: rRNA binding | 3.57E-02 |
| 49 | GO:0004674: protein serine/threonine kinase activity | 3.74E-02 |
| 50 | GO:0016829: lyase activity | 3.78E-02 |
| 51 | GO:0015144: carbohydrate transmembrane transporter activity | 4.06E-02 |
| 52 | GO:0005351: sugar:proton symporter activity | 4.42E-02 |