Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G13980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031222: arabinan catabolic process0.00E+00
2GO:0042794: rRNA transcription from plastid promoter0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
5GO:0090627: plant epidermal cell differentiation0.00E+00
6GO:0009606: tropism0.00E+00
7GO:0090322: regulation of superoxide metabolic process0.00E+00
8GO:0035884: arabinan biosynthetic process0.00E+00
9GO:1903224: regulation of endodermal cell differentiation0.00E+00
10GO:0097164: ammonium ion metabolic process0.00E+00
11GO:0080127: fruit septum development0.00E+00
12GO:0045184: establishment of protein localization0.00E+00
13GO:0046620: regulation of organ growth8.13E-11
14GO:0042793: transcription from plastid promoter6.70E-10
15GO:0009733: response to auxin3.93E-08
16GO:0009734: auxin-activated signaling pathway1.04E-06
17GO:0009416: response to light stimulus3.38E-06
18GO:0009926: auxin polar transport2.31E-05
19GO:2000038: regulation of stomatal complex development1.90E-04
20GO:0046656: folic acid biosynthetic process1.90E-04
21GO:0009658: chloroplast organization2.51E-04
22GO:0009913: epidermal cell differentiation4.04E-04
23GO:0046654: tetrahydrofolate biosynthetic process5.36E-04
24GO:0000066: mitochondrial ornithine transport6.07E-04
25GO:0015904: tetracycline transport6.07E-04
26GO:0034757: negative regulation of iron ion transport6.07E-04
27GO:0042659: regulation of cell fate specification6.07E-04
28GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.07E-04
29GO:1905039: carboxylic acid transmembrane transport6.07E-04
30GO:1905200: gibberellic acid transmembrane transport6.07E-04
31GO:0080112: seed growth6.07E-04
32GO:0090558: plant epidermis development6.07E-04
33GO:0010063: positive regulation of trichoblast fate specification6.07E-04
34GO:1903866: palisade mesophyll development6.07E-04
35GO:0035987: endodermal cell differentiation6.07E-04
36GO:0006436: tryptophanyl-tRNA aminoacylation6.07E-04
37GO:0009831: plant-type cell wall modification involved in multidimensional cell growth7.52E-04
38GO:0000105: histidine biosynthetic process8.52E-04
39GO:0007389: pattern specification process1.04E-03
40GO:2000123: positive regulation of stomatal complex development1.31E-03
41GO:1902326: positive regulation of chlorophyll biosynthetic process1.31E-03
42GO:0010569: regulation of double-strand break repair via homologous recombination1.31E-03
43GO:0070981: L-asparagine biosynthetic process1.31E-03
44GO:2000039: regulation of trichome morphogenesis1.31E-03
45GO:0010271: regulation of chlorophyll catabolic process1.31E-03
46GO:0018026: peptidyl-lysine monomethylation1.31E-03
47GO:0071497: cellular response to freezing1.31E-03
48GO:0009662: etioplast organization1.31E-03
49GO:1900033: negative regulation of trichome patterning1.31E-03
50GO:1904143: positive regulation of carotenoid biosynthetic process1.31E-03
51GO:0080009: mRNA methylation1.31E-03
52GO:0006529: asparagine biosynthetic process1.31E-03
53GO:0040008: regulation of growth1.66E-03
54GO:0006535: cysteine biosynthetic process from serine1.71E-03
55GO:0009451: RNA modification1.87E-03
56GO:0010252: auxin homeostasis1.88E-03
57GO:0009828: plant-type cell wall loosening1.88E-03
58GO:0090708: specification of plant organ axis polarity2.15E-03
59GO:0080117: secondary growth2.15E-03
60GO:0090391: granum assembly2.15E-03
61GO:0006518: peptide metabolic process2.15E-03
62GO:0001578: microtubule bundle formation2.15E-03
63GO:0006760: folic acid-containing compound metabolic process2.15E-03
64GO:0010027: thylakoid membrane organization2.36E-03
65GO:0010588: cotyledon vascular tissue pattern formation2.58E-03
66GO:1902476: chloride transmembrane transport3.12E-03
67GO:0010071: root meristem specification3.12E-03
68GO:0010239: chloroplast mRNA processing3.12E-03
69GO:0044211: CTP salvage3.12E-03
70GO:0009800: cinnamic acid biosynthetic process3.12E-03
71GO:0010306: rhamnogalacturonan II biosynthetic process3.12E-03
72GO:0046739: transport of virus in multicellular host3.12E-03
73GO:2000904: regulation of starch metabolic process3.12E-03
74GO:0051289: protein homotetramerization3.12E-03
75GO:0048481: plant ovule development3.31E-03
76GO:0019344: cysteine biosynthetic process4.05E-03
77GO:0048629: trichome patterning4.21E-03
78GO:0051322: anaphase4.21E-03
79GO:0030104: water homeostasis4.21E-03
80GO:0006221: pyrimidine nucleotide biosynthetic process4.21E-03
81GO:0006021: inositol biosynthetic process4.21E-03
82GO:0044206: UMP salvage4.21E-03
83GO:0006346: methylation-dependent chromatin silencing4.21E-03
84GO:1901141: regulation of lignin biosynthetic process4.21E-03
85GO:0006479: protein methylation4.21E-03
86GO:0016998: cell wall macromolecule catabolic process4.93E-03
87GO:0009107: lipoate biosynthetic process5.41E-03
88GO:0016123: xanthophyll biosynthetic process5.41E-03
89GO:0032876: negative regulation of DNA endoreduplication5.41E-03
90GO:0030308: negative regulation of cell growth5.41E-03
91GO:0010375: stomatal complex patterning5.41E-03
92GO:0080110: sporopollenin biosynthetic process5.41E-03
93GO:0048497: maintenance of floral organ identity5.41E-03
94GO:0016554: cytidine to uridine editing6.71E-03
95GO:0006655: phosphatidylglycerol biosynthetic process6.71E-03
96GO:1902456: regulation of stomatal opening6.71E-03
97GO:0048831: regulation of shoot system development6.71E-03
98GO:0010315: auxin efflux6.71E-03
99GO:0003006: developmental process involved in reproduction6.71E-03
100GO:0006559: L-phenylalanine catabolic process6.71E-03
101GO:0006206: pyrimidine nucleobase metabolic process6.71E-03
102GO:0018258: protein O-linked glycosylation via hydroxyproline6.71E-03
103GO:0009643: photosynthetic acclimation6.71E-03
104GO:0010405: arabinogalactan protein metabolic process6.71E-03
105GO:0080022: primary root development7.53E-03
106GO:0010087: phloem or xylem histogenesis7.53E-03
107GO:0016567: protein ubiquitination7.78E-03
108GO:2000037: regulation of stomatal complex patterning8.11E-03
109GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity8.11E-03
110GO:0010310: regulation of hydrogen peroxide metabolic process8.11E-03
111GO:2000067: regulation of root morphogenesis8.11E-03
112GO:0009955: adaxial/abaxial pattern specification8.11E-03
113GO:0071470: cellular response to osmotic stress8.11E-03
114GO:0010067: procambium histogenesis8.11E-03
115GO:0009942: longitudinal axis specification8.11E-03
116GO:0048509: regulation of meristem development8.11E-03
117GO:1901259: chloroplast rRNA processing8.11E-03
118GO:0030488: tRNA methylation8.11E-03
119GO:0009741: response to brassinosteroid8.13E-03
120GO:0010305: leaf vascular tissue pattern formation8.13E-03
121GO:0009664: plant-type cell wall organization8.33E-03
122GO:0009646: response to absence of light8.75E-03
123GO:0048544: recognition of pollen8.75E-03
124GO:0048825: cotyledon development9.39E-03
125GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway9.61E-03
126GO:0006955: immune response9.61E-03
127GO:0007050: cell cycle arrest9.61E-03
128GO:0006821: chloride transport9.61E-03
129GO:0048437: floral organ development9.61E-03
130GO:0015937: coenzyme A biosynthetic process9.61E-03
131GO:0009396: folic acid-containing compound biosynthetic process9.61E-03
132GO:0030307: positive regulation of cell growth9.61E-03
133GO:0010103: stomatal complex morphogenesis9.61E-03
134GO:0071554: cell wall organization or biogenesis1.01E-02
135GO:0032502: developmental process1.08E-02
136GO:0010583: response to cyclopentenone1.08E-02
137GO:0052543: callose deposition in cell wall1.12E-02
138GO:0001522: pseudouridine synthesis1.12E-02
139GO:0042255: ribosome assembly1.12E-02
140GO:0006353: DNA-templated transcription, termination1.12E-02
141GO:0048766: root hair initiation1.12E-02
142GO:0055075: potassium ion homeostasis1.12E-02
143GO:0048367: shoot system development1.18E-02
144GO:0007186: G-protein coupled receptor signaling pathway1.29E-02
145GO:0010497: plasmodesmata-mediated intercellular transport1.29E-02
146GO:0009826: unidimensional cell growth1.35E-02
147GO:0048507: meristem development1.46E-02
148GO:0000373: Group II intron splicing1.46E-02
149GO:0048589: developmental growth1.46E-02
150GO:0000902: cell morphogenesis1.46E-02
151GO:0009638: phototropism1.65E-02
152GO:0042761: very long-chain fatty acid biosynthetic process1.65E-02
153GO:2000280: regulation of root development1.65E-02
154GO:0006349: regulation of gene expression by genetic imprinting1.65E-02
155GO:1900865: chloroplast RNA modification1.65E-02
156GO:0031425: chloroplast RNA processing1.65E-02
157GO:0010411: xyloglucan metabolic process1.73E-02
158GO:0006949: syncytium formation1.84E-02
159GO:0031627: telomeric loop formation1.84E-02
160GO:0010048: vernalization response1.84E-02
161GO:0048829: root cap development1.84E-02
162GO:0000160: phosphorelay signal transduction system2.01E-02
163GO:0010015: root morphogenesis2.04E-02
164GO:0015770: sucrose transport2.04E-02
165GO:0006811: ion transport2.11E-02
166GO:0008361: regulation of cell size2.25E-02
167GO:0006790: sulfur compound metabolic process2.25E-02
168GO:0010152: pollen maturation2.25E-02
169GO:0016024: CDP-diacylglycerol biosynthetic process2.25E-02
170GO:0010582: floral meristem determinacy2.25E-02
171GO:0009767: photosynthetic electron transport chain2.46E-02
172GO:2000012: regulation of auxin polar transport2.46E-02
173GO:0030048: actin filament-based movement2.46E-02
174GO:0010102: lateral root morphogenesis2.46E-02
175GO:0009785: blue light signaling pathway2.46E-02
176GO:0009691: cytokinin biosynthetic process2.46E-02
177GO:0048467: gynoecium development2.68E-02
178GO:0006541: glutamine metabolic process2.68E-02
179GO:0010207: photosystem II assembly2.68E-02
180GO:0010223: secondary shoot formation2.68E-02
181GO:0030001: metal ion transport2.77E-02
182GO:0006839: mitochondrial transport2.77E-02
183GO:0007275: multicellular organism development2.90E-02
184GO:0080188: RNA-directed DNA methylation2.91E-02
185GO:0009901: anther dehiscence2.91E-02
186GO:0090351: seedling development2.91E-02
187GO:0046854: phosphatidylinositol phosphorylation2.91E-02
188GO:0006071: glycerol metabolic process3.15E-02
189GO:0006833: water transport3.15E-02
190GO:0042546: cell wall biogenesis3.26E-02
191GO:0016042: lipid catabolic process3.37E-02
192GO:0080147: root hair cell development3.39E-02
193GO:0051302: regulation of cell division3.63E-02
194GO:0006418: tRNA aminoacylation for protein translation3.63E-02
195GO:0006874: cellular calcium ion homeostasis3.63E-02
196GO:0010073: meristem maintenance3.63E-02
197GO:0006825: copper ion transport3.63E-02
198GO:0005975: carbohydrate metabolic process3.79E-02
199GO:0006306: DNA methylation3.89E-02
200GO:0003333: amino acid transmembrane transport3.89E-02
201GO:0071555: cell wall organization3.99E-02
202GO:0019748: secondary metabolic process4.14E-02
203GO:0031348: negative regulation of defense response4.14E-02
204GO:0009736: cytokinin-activated signaling pathway4.22E-02
205GO:0071215: cellular response to abscisic acid stimulus4.41E-02
206GO:0010082: regulation of root meristem growth4.41E-02
207GO:0001944: vasculature development4.41E-02
208GO:0010089: xylem development4.68E-02
209GO:0010584: pollen exine formation4.68E-02
210GO:0048443: stamen development4.68E-02
211GO:0006284: base-excision repair4.68E-02
212GO:0042127: regulation of cell proliferation4.68E-02
213GO:0070417: cellular response to cold4.95E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0052834: inositol monophosphate phosphatase activity0.00E+00
3GO:0071633: dihydroceramidase activity0.00E+00
4GO:0004401: histidinol-phosphatase activity0.00E+00
5GO:0004124: cysteine synthase activity5.36E-04
6GO:0010347: L-galactose-1-phosphate phosphatase activity6.07E-04
7GO:0004016: adenylate cyclase activity6.07E-04
8GO:0004400: histidinol-phosphate transaminase activity6.07E-04
9GO:1905201: gibberellin transmembrane transporter activity6.07E-04
10GO:0004632: phosphopantothenate--cysteine ligase activity6.07E-04
11GO:0042834: peptidoglycan binding6.07E-04
12GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.07E-04
13GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.07E-04
14GO:0004156: dihydropteroate synthase activity6.07E-04
15GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity6.07E-04
16GO:0016274: protein-arginine N-methyltransferase activity6.07E-04
17GO:0005290: L-histidine transmembrane transporter activity6.07E-04
18GO:0004071: aspartate-ammonia ligase activity6.07E-04
19GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.07E-04
20GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.07E-04
21GO:0052381: tRNA dimethylallyltransferase activity6.07E-04
22GO:0004830: tryptophan-tRNA ligase activity6.07E-04
23GO:0004519: endonuclease activity1.21E-03
24GO:0016415: octanoyltransferase activity1.31E-03
25GO:0102083: 7,8-dihydromonapterin aldolase activity1.31E-03
26GO:0052832: inositol monophosphate 3-phosphatase activity1.31E-03
27GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.31E-03
28GO:0008805: carbon-monoxide oxygenase activity1.31E-03
29GO:0008934: inositol monophosphate 1-phosphatase activity1.31E-03
30GO:0008493: tetracycline transporter activity1.31E-03
31GO:0004150: dihydroneopterin aldolase activity1.31E-03
32GO:0052833: inositol monophosphate 4-phosphatase activity1.31E-03
33GO:0000064: L-ornithine transmembrane transporter activity1.31E-03
34GO:0015929: hexosaminidase activity1.31E-03
35GO:0004563: beta-N-acetylhexosaminidase activity1.31E-03
36GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.31E-03
37GO:0009884: cytokinin receptor activity1.31E-03
38GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.31E-03
39GO:0017118: lipoyltransferase activity1.31E-03
40GO:0009672: auxin:proton symporter activity1.46E-03
41GO:0017150: tRNA dihydrouridine synthase activity2.15E-03
42GO:0045548: phenylalanine ammonia-lyase activity2.15E-03
43GO:0016805: dipeptidase activity2.15E-03
44GO:0005034: osmosensor activity2.15E-03
45GO:0004871: signal transducer activity2.47E-03
46GO:0003725: double-stranded RNA binding2.58E-03
47GO:0010329: auxin efflux transmembrane transporter activity2.58E-03
48GO:0001872: (1->3)-beta-D-glucan binding3.12E-03
49GO:0015189: L-lysine transmembrane transporter activity3.12E-03
50GO:0009041: uridylate kinase activity3.12E-03
51GO:0015181: arginine transmembrane transporter activity3.12E-03
52GO:0004845: uracil phosphoribosyltransferase activity4.21E-03
53GO:0010011: auxin binding4.21E-03
54GO:0005253: anion channel activity4.21E-03
55GO:0004930: G-protein coupled receptor activity4.21E-03
56GO:0046556: alpha-L-arabinofuranosidase activity4.21E-03
57GO:0016279: protein-lysine N-methyltransferase activity4.21E-03
58GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.49E-03
59GO:0008725: DNA-3-methyladenine glycosylase activity5.41E-03
60GO:0004523: RNA-DNA hybrid ribonuclease activity5.41E-03
61GO:0016773: phosphotransferase activity, alcohol group as acceptor5.41E-03
62GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.41E-03
63GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding5.48E-03
64GO:0030570: pectate lyase activity5.90E-03
65GO:0003727: single-stranded RNA binding6.42E-03
66GO:0005247: voltage-gated chloride channel activity6.71E-03
67GO:0004605: phosphatidate cytidylyltransferase activity6.71E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity6.71E-03
69GO:0003723: RNA binding7.62E-03
70GO:0008195: phosphatidate phosphatase activity8.11E-03
71GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity8.11E-03
72GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.11E-03
73GO:0004849: uridine kinase activity8.11E-03
74GO:0016832: aldehyde-lyase activity8.11E-03
75GO:0004656: procollagen-proline 4-dioxygenase activity8.11E-03
76GO:0019900: kinase binding8.11E-03
77GO:0001085: RNA polymerase II transcription factor binding8.13E-03
78GO:0019901: protein kinase binding9.39E-03
79GO:0016762: xyloglucan:xyloglucosyl transferase activity1.01E-02
80GO:0003777: microtubule motor activity1.04E-02
81GO:0004518: nuclease activity1.08E-02
82GO:0004650: polygalacturonase activity1.28E-02
83GO:0016413: O-acetyltransferase activity1.38E-02
84GO:0008889: glycerophosphodiester phosphodiesterase activity1.46E-02
85GO:0016788: hydrolase activity, acting on ester bonds1.47E-02
86GO:0016798: hydrolase activity, acting on glycosyl bonds1.73E-02
87GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.80E-02
88GO:0004673: protein histidine kinase activity1.84E-02
89GO:0003691: double-stranded telomeric DNA binding2.04E-02
90GO:0008515: sucrose transmembrane transporter activity2.04E-02
91GO:0005089: Rho guanyl-nucleotide exchange factor activity2.04E-02
92GO:0016829: lyase activity2.11E-02
93GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.22E-02
94GO:0052689: carboxylic ester hydrolase activity2.29E-02
95GO:0000155: phosphorelay sensor kinase activity2.46E-02
96GO:0009982: pseudouridine synthase activity2.46E-02
97GO:0004022: alcohol dehydrogenase (NAD) activity2.46E-02
98GO:0031072: heat shock protein binding2.46E-02
99GO:0003774: motor activity2.68E-02
100GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.68E-02
101GO:0004970: ionotropic glutamate receptor activity2.91E-02
102GO:0051119: sugar transmembrane transporter activity2.91E-02
103GO:0005217: intracellular ligand-gated ion channel activity2.91E-02
104GO:0031418: L-ascorbic acid binding3.39E-02
105GO:0043621: protein self-association3.39E-02
106GO:0043424: protein histidine kinase binding3.63E-02
107GO:0005345: purine nucleobase transmembrane transporter activity3.63E-02
108GO:0008408: 3'-5' exonuclease activity3.89E-02
109GO:0035251: UDP-glucosyltransferase activity3.89E-02
110GO:0004707: MAP kinase activity3.89E-02
111GO:0005215: transporter activity4.79E-02
112GO:0004812: aminoacyl-tRNA ligase activity4.95E-02
113GO:0018024: histone-lysine N-methyltransferase activity4.95E-02
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Gene type



Gene DE type