GO Enrichment Analysis of Co-expressed Genes with
AT3G13640
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 3 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 4 | GO:0009704: de-etiolation | 3.06E-05 |
| 5 | GO:0055114: oxidation-reduction process | 4.42E-05 |
| 6 | GO:0006098: pentose-phosphate shunt | 4.89E-05 |
| 7 | GO:0046167: glycerol-3-phosphate biosynthetic process | 6.74E-05 |
| 8 | GO:0043007: maintenance of rDNA | 6.74E-05 |
| 9 | GO:0015969: guanosine tetraphosphate metabolic process | 6.74E-05 |
| 10 | GO:0010426: DNA methylation on cytosine within a CHH sequence | 6.74E-05 |
| 11 | GO:0071277: cellular response to calcium ion | 6.74E-05 |
| 12 | GO:0006631: fatty acid metabolic process | 9.62E-05 |
| 13 | GO:0006094: gluconeogenesis | 1.15E-04 |
| 14 | GO:0015790: UDP-xylose transport | 1.62E-04 |
| 15 | GO:0006650: glycerophospholipid metabolic process | 1.62E-04 |
| 16 | GO:0044375: regulation of peroxisome size | 2.75E-04 |
| 17 | GO:0046168: glycerol-3-phosphate catabolic process | 2.75E-04 |
| 18 | GO:0010731: protein glutathionylation | 3.98E-04 |
| 19 | GO:0009152: purine ribonucleotide biosynthetic process | 3.98E-04 |
| 20 | GO:0046653: tetrahydrofolate metabolic process | 3.98E-04 |
| 21 | GO:0006072: glycerol-3-phosphate metabolic process | 3.98E-04 |
| 22 | GO:0006633: fatty acid biosynthetic process | 4.86E-04 |
| 23 | GO:0045727: positive regulation of translation | 5.32E-04 |
| 24 | GO:0010600: regulation of auxin biosynthetic process | 5.32E-04 |
| 25 | GO:0009107: lipoate biosynthetic process | 6.73E-04 |
| 26 | GO:0006465: signal peptide processing | 6.73E-04 |
| 27 | GO:0015995: chlorophyll biosynthetic process | 7.86E-04 |
| 28 | GO:0006014: D-ribose metabolic process | 8.23E-04 |
| 29 | GO:0042549: photosystem II stabilization | 8.23E-04 |
| 30 | GO:0009658: chloroplast organization | 9.40E-04 |
| 31 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 9.79E-04 |
| 32 | GO:0006400: tRNA modification | 1.14E-03 |
| 33 | GO:0010161: red light signaling pathway | 1.14E-03 |
| 34 | GO:0016559: peroxisome fission | 1.32E-03 |
| 35 | GO:0010928: regulation of auxin mediated signaling pathway | 1.32E-03 |
| 36 | GO:0042255: ribosome assembly | 1.32E-03 |
| 37 | GO:0006353: DNA-templated transcription, termination | 1.32E-03 |
| 38 | GO:0006526: arginine biosynthetic process | 1.50E-03 |
| 39 | GO:0032544: plastid translation | 1.50E-03 |
| 40 | GO:0009932: cell tip growth | 1.50E-03 |
| 41 | GO:0009657: plastid organization | 1.50E-03 |
| 42 | GO:0009636: response to toxic substance | 1.55E-03 |
| 43 | GO:0009821: alkaloid biosynthetic process | 1.69E-03 |
| 44 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 1.69E-03 |
| 45 | GO:0090333: regulation of stomatal closure | 1.69E-03 |
| 46 | GO:0043069: negative regulation of programmed cell death | 2.10E-03 |
| 47 | GO:0006096: glycolytic process | 2.18E-03 |
| 48 | GO:0000272: polysaccharide catabolic process | 2.31E-03 |
| 49 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.31E-03 |
| 50 | GO:0018107: peptidyl-threonine phosphorylation | 2.76E-03 |
| 51 | GO:0010207: photosystem II assembly | 2.99E-03 |
| 52 | GO:0034605: cellular response to heat | 2.99E-03 |
| 53 | GO:0010143: cutin biosynthetic process | 2.99E-03 |
| 54 | GO:0007031: peroxisome organization | 3.23E-03 |
| 55 | GO:0009058: biosynthetic process | 3.43E-03 |
| 56 | GO:0010025: wax biosynthetic process | 3.48E-03 |
| 57 | GO:0005975: carbohydrate metabolic process | 3.93E-03 |
| 58 | GO:0006306: DNA methylation | 4.26E-03 |
| 59 | GO:0010017: red or far-red light signaling pathway | 4.53E-03 |
| 60 | GO:0006817: phosphate ion transport | 5.09E-03 |
| 61 | GO:0009306: protein secretion | 5.09E-03 |
| 62 | GO:0042631: cellular response to water deprivation | 5.68E-03 |
| 63 | GO:0006520: cellular amino acid metabolic process | 5.98E-03 |
| 64 | GO:0007059: chromosome segregation | 6.28E-03 |
| 65 | GO:0019252: starch biosynthetic process | 6.60E-03 |
| 66 | GO:0008654: phospholipid biosynthetic process | 6.60E-03 |
| 67 | GO:0032502: developmental process | 7.24E-03 |
| 68 | GO:0007264: small GTPase mediated signal transduction | 7.24E-03 |
| 69 | GO:0044550: secondary metabolite biosynthetic process | 9.32E-03 |
| 70 | GO:0042128: nitrate assimilation | 9.65E-03 |
| 71 | GO:0010411: xyloglucan metabolic process | 1.00E-02 |
| 72 | GO:0009813: flavonoid biosynthetic process | 1.11E-02 |
| 73 | GO:0010311: lateral root formation | 1.11E-02 |
| 74 | GO:0009407: toxin catabolic process | 1.15E-02 |
| 75 | GO:0007568: aging | 1.19E-02 |
| 76 | GO:0016051: carbohydrate biosynthetic process | 1.27E-02 |
| 77 | GO:0009853: photorespiration | 1.27E-02 |
| 78 | GO:0010114: response to red light | 1.52E-02 |
| 79 | GO:0042546: cell wall biogenesis | 1.57E-02 |
| 80 | GO:0008643: carbohydrate transport | 1.61E-02 |
| 81 | GO:0046686: response to cadmium ion | 1.77E-02 |
| 82 | GO:0006364: rRNA processing | 1.88E-02 |
| 83 | GO:0009585: red, far-red light phototransduction | 1.88E-02 |
| 84 | GO:0006417: regulation of translation | 2.02E-02 |
| 85 | GO:0009735: response to cytokinin | 2.06E-02 |
| 86 | GO:0043086: negative regulation of catalytic activity | 2.12E-02 |
| 87 | GO:0016569: covalent chromatin modification | 2.31E-02 |
| 88 | GO:0018105: peptidyl-serine phosphorylation | 2.47E-02 |
| 89 | GO:0006396: RNA processing | 2.47E-02 |
| 90 | GO:0009742: brassinosteroid mediated signaling pathway | 2.52E-02 |
| 91 | GO:0007623: circadian rhythm | 3.57E-02 |
| 92 | GO:0007166: cell surface receptor signaling pathway | 3.92E-02 |
| 93 | GO:0008380: RNA splicing | 4.04E-02 |
| 94 | GO:0010468: regulation of gene expression | 4.04E-02 |
| 95 | GO:0071555: cell wall organization | 4.55E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 4 | GO:0004332: fructose-bisphosphate aldolase activity | 1.18E-05 |
| 5 | GO:0016491: oxidoreductase activity | 1.53E-05 |
| 6 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 6.74E-05 |
| 7 | GO:0080132: fatty acid alpha-hydroxylase activity | 6.74E-05 |
| 8 | GO:0031957: very long-chain fatty acid-CoA ligase activity | 6.74E-05 |
| 9 | GO:0004565: beta-galactosidase activity | 1.15E-04 |
| 10 | GO:0018708: thiol S-methyltransferase activity | 1.62E-04 |
| 11 | GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity | 1.62E-04 |
| 12 | GO:0008728: GTP diphosphokinase activity | 1.62E-04 |
| 13 | GO:0010297: heteropolysaccharide binding | 1.62E-04 |
| 14 | GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity | 1.62E-04 |
| 15 | GO:0005464: UDP-xylose transmembrane transporter activity | 1.62E-04 |
| 16 | GO:0005504: fatty acid binding | 2.75E-04 |
| 17 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 2.75E-04 |
| 18 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 2.75E-04 |
| 19 | GO:0008864: formyltetrahydrofolate deformylase activity | 2.75E-04 |
| 20 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 2.75E-04 |
| 21 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 2.75E-04 |
| 22 | GO:0016992: lipoate synthase activity | 2.75E-04 |
| 23 | GO:0003727: single-stranded RNA binding | 3.02E-04 |
| 24 | GO:0016851: magnesium chelatase activity | 3.98E-04 |
| 25 | GO:0045430: chalcone isomerase activity | 5.32E-04 |
| 26 | GO:0102391: decanoate--CoA ligase activity | 9.79E-04 |
| 27 | GO:0004747: ribokinase activity | 9.79E-04 |
| 28 | GO:0003886: DNA (cytosine-5-)-methyltransferase activity | 9.79E-04 |
| 29 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.14E-03 |
| 30 | GO:0008865: fructokinase activity | 1.32E-03 |
| 31 | GO:0004364: glutathione transferase activity | 1.33E-03 |
| 32 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.49E-03 |
| 33 | GO:0051287: NAD binding | 1.66E-03 |
| 34 | GO:0071949: FAD binding | 1.69E-03 |
| 35 | GO:0016844: strictosidine synthase activity | 1.89E-03 |
| 36 | GO:0003690: double-stranded DNA binding | 1.91E-03 |
| 37 | GO:0005315: inorganic phosphate transmembrane transporter activity | 2.76E-03 |
| 38 | GO:0019843: rRNA binding | 3.25E-03 |
| 39 | GO:0005528: FK506 binding | 3.73E-03 |
| 40 | GO:0050662: coenzyme binding | 6.28E-03 |
| 41 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 6.91E-03 |
| 42 | GO:0004518: nuclease activity | 7.24E-03 |
| 43 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 8.24E-03 |
| 44 | GO:0005506: iron ion binding | 9.87E-03 |
| 45 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.00E-02 |
| 46 | GO:0043621: protein self-association | 1.61E-02 |
| 47 | GO:0035091: phosphatidylinositol binding | 1.61E-02 |
| 48 | GO:0015293: symporter activity | 1.65E-02 |
| 49 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.70E-02 |
| 50 | GO:0004650: polygalacturonase activity | 2.26E-02 |
| 51 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.89E-02 |
| 52 | GO:0005507: copper ion binding | 3.21E-02 |
| 53 | GO:0008565: protein transporter activity | 3.22E-02 |
| 54 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.39E-02 |
| 55 | GO:0046910: pectinesterase inhibitor activity | 3.39E-02 |
| 56 | GO:0015297: antiporter activity | 3.45E-02 |
| 57 | GO:0005525: GTP binding | 3.71E-02 |
| 58 | GO:0042802: identical protein binding | 4.23E-02 |
| 59 | GO:0008168: methyltransferase activity | 4.73E-02 |
| 60 | GO:0016788: hydrolase activity, acting on ester bonds | 4.93E-02 |
| 61 | GO:0003824: catalytic activity | 4.98E-02 |