GO Enrichment Analysis of Co-expressed Genes with
AT3G13490
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1900370: positive regulation of RNA interference | 0.00E+00 |
| 2 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 3 | GO:0035563: positive regulation of chromatin binding | 0.00E+00 |
| 4 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 5 | GO:0060966: regulation of gene silencing by RNA | 0.00E+00 |
| 6 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0008064: regulation of actin polymerization or depolymerization | 0.00E+00 |
| 8 | GO:0070829: heterochromatin maintenance | 0.00E+00 |
| 9 | GO:0071360: cellular response to exogenous dsRNA | 0.00E+00 |
| 10 | GO:0051493: regulation of cytoskeleton organization | 0.00E+00 |
| 11 | GO:1900368: regulation of RNA interference | 4.74E-05 |
| 12 | GO:0034214: protein hexamerization | 4.74E-05 |
| 13 | GO:0033206: meiotic cytokinesis | 4.74E-05 |
| 14 | GO:0006390: transcription from mitochondrial promoter | 4.74E-05 |
| 15 | GO:0043039: tRNA aminoacylation | 1.17E-04 |
| 16 | GO:1901529: positive regulation of anion channel activity | 1.17E-04 |
| 17 | GO:1900111: positive regulation of histone H3-K9 dimethylation | 1.17E-04 |
| 18 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 2.00E-04 |
| 19 | GO:0060968: regulation of gene silencing | 2.00E-04 |
| 20 | GO:0032776: DNA methylation on cytosine | 2.00E-04 |
| 21 | GO:0040008: regulation of growth | 2.85E-04 |
| 22 | GO:0033169: histone H3-K9 demethylation | 2.94E-04 |
| 23 | GO:0009102: biotin biosynthetic process | 2.94E-04 |
| 24 | GO:0007276: gamete generation | 2.94E-04 |
| 25 | GO:0060964: regulation of gene silencing by miRNA | 2.94E-04 |
| 26 | GO:0006808: regulation of nitrogen utilization | 3.94E-04 |
| 27 | GO:0016120: carotene biosynthetic process | 5.00E-04 |
| 28 | GO:0016558: protein import into peroxisome matrix | 5.00E-04 |
| 29 | GO:0016123: xanthophyll biosynthetic process | 5.00E-04 |
| 30 | GO:0042793: transcription from plastid promoter | 6.13E-04 |
| 31 | GO:2000033: regulation of seed dormancy process | 7.31E-04 |
| 32 | GO:0048444: floral organ morphogenesis | 7.31E-04 |
| 33 | GO:1900056: negative regulation of leaf senescence | 8.54E-04 |
| 34 | GO:0010098: suspensor development | 8.54E-04 |
| 35 | GO:0006401: RNA catabolic process | 8.54E-04 |
| 36 | GO:0010928: regulation of auxin mediated signaling pathway | 9.81E-04 |
| 37 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 9.81E-04 |
| 38 | GO:0006402: mRNA catabolic process | 9.81E-04 |
| 39 | GO:0010492: maintenance of shoot apical meristem identity | 9.81E-04 |
| 40 | GO:0010233: phloem transport | 1.11E-03 |
| 41 | GO:0010100: negative regulation of photomorphogenesis | 1.11E-03 |
| 42 | GO:0006364: rRNA processing | 1.18E-03 |
| 43 | GO:0031425: chloroplast RNA processing | 1.40E-03 |
| 44 | GO:0019538: protein metabolic process | 1.55E-03 |
| 45 | GO:0030422: production of siRNA involved in RNA interference | 1.55E-03 |
| 46 | GO:0009641: shade avoidance | 1.55E-03 |
| 47 | GO:0006949: syncytium formation | 1.55E-03 |
| 48 | GO:0045037: protein import into chloroplast stroma | 1.86E-03 |
| 49 | GO:0009887: animal organ morphogenesis | 2.20E-03 |
| 50 | GO:0009934: regulation of meristem structural organization | 2.20E-03 |
| 51 | GO:0080188: RNA-directed DNA methylation | 2.38E-03 |
| 52 | GO:0009863: salicylic acid mediated signaling pathway | 2.74E-03 |
| 53 | GO:0010187: negative regulation of seed germination | 2.74E-03 |
| 54 | GO:2000377: regulation of reactive oxygen species metabolic process | 2.74E-03 |
| 55 | GO:0051302: regulation of cell division | 2.93E-03 |
| 56 | GO:0006418: tRNA aminoacylation for protein translation | 2.93E-03 |
| 57 | GO:0006306: DNA methylation | 3.12E-03 |
| 58 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 3.52E-03 |
| 59 | GO:0042127: regulation of cell proliferation | 3.73E-03 |
| 60 | GO:0008033: tRNA processing | 4.15E-03 |
| 61 | GO:0010501: RNA secondary structure unwinding | 4.15E-03 |
| 62 | GO:0008360: regulation of cell shape | 4.37E-03 |
| 63 | GO:0009958: positive gravitropism | 4.37E-03 |
| 64 | GO:0009658: chloroplast organization | 4.38E-03 |
| 65 | GO:0006635: fatty acid beta-oxidation | 5.04E-03 |
| 66 | GO:0007264: small GTPase mediated signal transduction | 5.28E-03 |
| 67 | GO:0032502: developmental process | 5.28E-03 |
| 68 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 5.61E-03 |
| 69 | GO:0019760: glucosinolate metabolic process | 5.75E-03 |
| 70 | GO:0006464: cellular protein modification process | 5.75E-03 |
| 71 | GO:0009828: plant-type cell wall loosening | 5.75E-03 |
| 72 | GO:0010029: regulation of seed germination | 6.75E-03 |
| 73 | GO:0015995: chlorophyll biosynthetic process | 7.28E-03 |
| 74 | GO:0016311: dephosphorylation | 7.54E-03 |
| 75 | GO:0010218: response to far red light | 8.37E-03 |
| 76 | GO:0009867: jasmonic acid mediated signaling pathway | 9.22E-03 |
| 77 | GO:0009908: flower development | 1.28E-02 |
| 78 | GO:0042538: hyperosmotic salinity response | 1.29E-02 |
| 79 | GO:0009664: plant-type cell wall organization | 1.29E-02 |
| 80 | GO:0009585: red, far-red light phototransduction | 1.36E-02 |
| 81 | GO:0048316: seed development | 1.57E-02 |
| 82 | GO:0009793: embryo development ending in seed dormancy | 1.62E-02 |
| 83 | GO:0009740: gibberellic acid mediated signaling pathway | 1.67E-02 |
| 84 | GO:0006396: RNA processing | 1.78E-02 |
| 85 | GO:0009742: brassinosteroid mediated signaling pathway | 1.82E-02 |
| 86 | GO:0016036: cellular response to phosphate starvation | 2.45E-02 |
| 87 | GO:0009451: RNA modification | 2.62E-02 |
| 88 | GO:0009739: response to gibberellin | 2.79E-02 |
| 89 | GO:0006470: protein dephosphorylation | 2.83E-02 |
| 90 | GO:0009617: response to bacterium | 2.92E-02 |
| 91 | GO:0009826: unidimensional cell growth | 3.42E-02 |
| 92 | GO:0009723: response to ethylene | 3.90E-02 |
| 93 | GO:0006810: transport | 4.23E-02 |
| 94 | GO:0016192: vesicle-mediated transport | 4.24E-02 |
| 95 | GO:0045892: negative regulation of transcription, DNA-templated | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 2 | GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity | 0.00E+00 |
| 3 | GO:0004835: tubulin-tyrosine ligase activity | 0.00E+00 |
| 4 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 5 | GO:0004831: tyrosine-tRNA ligase activity | 4.74E-05 |
| 6 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 4.74E-05 |
| 7 | GO:0032454: histone demethylase activity (H3-K9 specific) | 1.17E-04 |
| 8 | GO:0003723: RNA binding | 4.95E-04 |
| 9 | GO:0042803: protein homodimerization activity | 9.18E-04 |
| 10 | GO:0000989: transcription factor activity, transcription factor binding | 1.25E-03 |
| 11 | GO:0031490: chromatin DNA binding | 1.40E-03 |
| 12 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.70E-03 |
| 13 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 1.86E-03 |
| 14 | GO:0016887: ATPase activity | 1.93E-03 |
| 15 | GO:0000175: 3'-5'-exoribonuclease activity | 2.03E-03 |
| 16 | GO:0003725: double-stranded RNA binding | 2.03E-03 |
| 17 | GO:0005524: ATP binding | 2.38E-03 |
| 18 | GO:0003712: transcription cofactor activity | 2.38E-03 |
| 19 | GO:0004812: aminoacyl-tRNA ligase activity | 3.93E-03 |
| 20 | GO:0005515: protein binding | 5.52E-03 |
| 21 | GO:0016791: phosphatase activity | 5.75E-03 |
| 22 | GO:0004722: protein serine/threonine phosphatase activity | 7.11E-03 |
| 23 | GO:0004004: ATP-dependent RNA helicase activity | 7.28E-03 |
| 24 | GO:0003993: acid phosphatase activity | 9.51E-03 |
| 25 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.36E-02 |
| 26 | GO:0016298: lipase activity | 1.39E-02 |
| 27 | GO:0016874: ligase activity | 1.67E-02 |
| 28 | GO:0003779: actin binding | 1.71E-02 |
| 29 | GO:0008026: ATP-dependent helicase activity | 1.82E-02 |
| 30 | GO:0004386: helicase activity | 1.86E-02 |
| 31 | GO:0004252: serine-type endopeptidase activity | 2.20E-02 |
| 32 | GO:0030170: pyridoxal phosphate binding | 2.20E-02 |
| 33 | GO:0005525: GTP binding | 2.34E-02 |
| 34 | GO:0003676: nucleic acid binding | 3.34E-02 |
| 35 | GO:0000287: magnesium ion binding | 3.47E-02 |
| 36 | GO:0004674: protein serine/threonine kinase activity | 4.17E-02 |
| 37 | GO:0004672: protein kinase activity | 4.23E-02 |