GO Enrichment Analysis of Co-expressed Genes with
AT3G13190
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 2 | GO:0009606: tropism | 0.00E+00 |
| 3 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 4 | GO:0031222: arabinan catabolic process | 0.00E+00 |
| 5 | GO:0009734: auxin-activated signaling pathway | 3.51E-06 |
| 6 | GO:0010588: cotyledon vascular tissue pattern formation | 2.00E-05 |
| 7 | GO:2000038: regulation of stomatal complex development | 2.77E-05 |
| 8 | GO:0009416: response to light stimulus | 6.32E-05 |
| 9 | GO:0009733: response to auxin | 1.15E-04 |
| 10 | GO:0046620: regulation of organ growth | 1.56E-04 |
| 11 | GO:0034757: negative regulation of iron ion transport | 1.93E-04 |
| 12 | GO:0048016: inositol phosphate-mediated signaling | 1.93E-04 |
| 13 | GO:0033206: meiotic cytokinesis | 1.93E-04 |
| 14 | GO:0010569: regulation of double-strand break repair via homologous recombination | 4.33E-04 |
| 15 | GO:0010271: regulation of chlorophyll catabolic process | 4.33E-04 |
| 16 | GO:1900033: negative regulation of trichome patterning | 4.33E-04 |
| 17 | GO:0080009: mRNA methylation | 4.33E-04 |
| 18 | GO:2000123: positive regulation of stomatal complex development | 4.33E-04 |
| 19 | GO:0030001: metal ion transport | 6.28E-04 |
| 20 | GO:0080117: secondary growth | 7.06E-04 |
| 21 | GO:0007276: gamete generation | 1.01E-03 |
| 22 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.34E-03 |
| 23 | GO:0006808: regulation of nitrogen utilization | 1.34E-03 |
| 24 | GO:0006479: protein methylation | 1.34E-03 |
| 25 | GO:0048629: trichome patterning | 1.34E-03 |
| 26 | GO:0010087: phloem or xylem histogenesis | 1.40E-03 |
| 27 | GO:0010305: leaf vascular tissue pattern formation | 1.51E-03 |
| 28 | GO:0032957: inositol trisphosphate metabolic process | 1.70E-03 |
| 29 | GO:0032876: negative regulation of DNA endoreduplication | 1.70E-03 |
| 30 | GO:0030308: negative regulation of cell growth | 1.70E-03 |
| 31 | GO:0010375: stomatal complex patterning | 1.70E-03 |
| 32 | GO:0006351: transcription, DNA-templated | 2.06E-03 |
| 33 | GO:0016554: cytidine to uridine editing | 2.10E-03 |
| 34 | GO:0010315: auxin efflux | 2.10E-03 |
| 35 | GO:0046855: inositol phosphate dephosphorylation | 2.10E-03 |
| 36 | GO:0048831: regulation of shoot system development | 2.10E-03 |
| 37 | GO:0009643: photosynthetic acclimation | 2.10E-03 |
| 38 | GO:0010252: auxin homeostasis | 2.24E-03 |
| 39 | GO:0010067: procambium histogenesis | 2.52E-03 |
| 40 | GO:2000033: regulation of seed dormancy process | 2.52E-03 |
| 41 | GO:0048509: regulation of meristem development | 2.52E-03 |
| 42 | GO:2000037: regulation of stomatal complex patterning | 2.52E-03 |
| 43 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.52E-03 |
| 44 | GO:0010310: regulation of hydrogen peroxide metabolic process | 2.52E-03 |
| 45 | GO:0010029: regulation of seed germination | 2.82E-03 |
| 46 | GO:0010103: stomatal complex morphogenesis | 2.96E-03 |
| 47 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 2.96E-03 |
| 48 | GO:0010374: stomatal complex development | 2.96E-03 |
| 49 | GO:0040008: regulation of growth | 3.10E-03 |
| 50 | GO:0048766: root hair initiation | 3.43E-03 |
| 51 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 3.43E-03 |
| 52 | GO:0010492: maintenance of shoot apical meristem identity | 3.43E-03 |
| 53 | GO:0007186: G-protein coupled receptor signaling pathway | 3.93E-03 |
| 54 | GO:0010233: phloem transport | 3.93E-03 |
| 55 | GO:0048574: long-day photoperiodism, flowering | 3.93E-03 |
| 56 | GO:0010052: guard cell differentiation | 3.93E-03 |
| 57 | GO:0007389: pattern specification process | 3.93E-03 |
| 58 | GO:0009245: lipid A biosynthetic process | 4.44E-03 |
| 59 | GO:0048589: developmental growth | 4.44E-03 |
| 60 | GO:1900865: chloroplast RNA modification | 4.99E-03 |
| 61 | GO:0042761: very long-chain fatty acid biosynthetic process | 4.99E-03 |
| 62 | GO:0006349: regulation of gene expression by genetic imprinting | 4.99E-03 |
| 63 | GO:0010048: vernalization response | 5.55E-03 |
| 64 | GO:0006535: cysteine biosynthetic process from serine | 5.55E-03 |
| 65 | GO:0048829: root cap development | 5.55E-03 |
| 66 | GO:0009926: auxin polar transport | 5.66E-03 |
| 67 | GO:0046856: phosphatidylinositol dephosphorylation | 6.13E-03 |
| 68 | GO:0010015: root morphogenesis | 6.13E-03 |
| 69 | GO:0030154: cell differentiation | 6.18E-03 |
| 70 | GO:0008361: regulation of cell size | 6.73E-03 |
| 71 | GO:0012501: programmed cell death | 6.73E-03 |
| 72 | GO:0010152: pollen maturation | 6.73E-03 |
| 73 | GO:0010102: lateral root morphogenesis | 7.36E-03 |
| 74 | GO:0009767: photosynthetic electron transport chain | 7.36E-03 |
| 75 | GO:0009887: animal organ morphogenesis | 8.01E-03 |
| 76 | GO:0080188: RNA-directed DNA methylation | 8.67E-03 |
| 77 | GO:0045892: negative regulation of transcription, DNA-templated | 9.67E-03 |
| 78 | GO:0019344: cysteine biosynthetic process | 1.01E-02 |
| 79 | GO:0009863: salicylic acid mediated signaling pathway | 1.01E-02 |
| 80 | GO:0010187: negative regulation of seed germination | 1.01E-02 |
| 81 | GO:0080147: root hair cell development | 1.01E-02 |
| 82 | GO:2000377: regulation of reactive oxygen species metabolic process | 1.01E-02 |
| 83 | GO:0006874: cellular calcium ion homeostasis | 1.08E-02 |
| 84 | GO:0010073: meristem maintenance | 1.08E-02 |
| 85 | GO:0006825: copper ion transport | 1.08E-02 |
| 86 | GO:0003333: amino acid transmembrane transport | 1.15E-02 |
| 87 | GO:0031348: negative regulation of defense response | 1.23E-02 |
| 88 | GO:0071215: cellular response to abscisic acid stimulus | 1.31E-02 |
| 89 | GO:0010082: regulation of root meristem growth | 1.31E-02 |
| 90 | GO:0048443: stamen development | 1.39E-02 |
| 91 | GO:0006284: base-excision repair | 1.39E-02 |
| 92 | GO:0042127: regulation of cell proliferation | 1.39E-02 |
| 93 | GO:0070417: cellular response to cold | 1.47E-02 |
| 94 | GO:0042631: cellular response to water deprivation | 1.55E-02 |
| 95 | GO:0080022: primary root development | 1.55E-02 |
| 96 | GO:0010051: xylem and phloem pattern formation | 1.55E-02 |
| 97 | GO:0009960: endosperm development | 1.63E-02 |
| 98 | GO:0009958: positive gravitropism | 1.63E-02 |
| 99 | GO:0048544: recognition of pollen | 1.72E-02 |
| 100 | GO:0045490: pectin catabolic process | 1.89E-02 |
| 101 | GO:0080156: mitochondrial mRNA modification | 1.90E-02 |
| 102 | GO:0009630: gravitropism | 1.99E-02 |
| 103 | GO:0030163: protein catabolic process | 2.08E-02 |
| 104 | GO:0010090: trichome morphogenesis | 2.08E-02 |
| 105 | GO:0009739: response to gibberellin | 2.11E-02 |
| 106 | GO:0019760: glucosinolate metabolic process | 2.18E-02 |
| 107 | GO:0007267: cell-cell signaling | 2.27E-02 |
| 108 | GO:0001666: response to hypoxia | 2.47E-02 |
| 109 | GO:0048481: plant ovule development | 2.98E-02 |
| 110 | GO:0045893: positive regulation of transcription, DNA-templated | 3.03E-02 |
| 111 | GO:0048767: root hair elongation | 3.09E-02 |
| 112 | GO:0000160: phosphorelay signal transduction system | 3.09E-02 |
| 113 | GO:0009834: plant-type secondary cell wall biogenesis | 3.20E-02 |
| 114 | GO:0006811: ion transport | 3.20E-02 |
| 115 | GO:0010218: response to far red light | 3.20E-02 |
| 116 | GO:0006355: regulation of transcription, DNA-templated | 3.34E-02 |
| 117 | GO:0009723: response to ethylene | 3.38E-02 |
| 118 | GO:0006865: amino acid transport | 3.42E-02 |
| 119 | GO:0009867: jasmonic acid mediated signaling pathway | 3.53E-02 |
| 120 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.74E-02 |
| 121 | GO:0006897: endocytosis | 3.99E-02 |
| 122 | GO:0051707: response to other organism | 4.23E-02 |
| 123 | GO:0009636: response to toxic substance | 4.59E-02 |
| 124 | GO:0006855: drug transmembrane transport | 4.71E-02 |
| 125 | GO:0000165: MAPK cascade | 4.84E-02 |
| 126 | GO:0042538: hyperosmotic salinity response | 4.96E-02 |
| 127 | GO:0007275: multicellular organism development | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 4.77E-05 |
| 2 | GO:0046030: inositol trisphosphate phosphatase activity | 1.93E-04 |
| 3 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.93E-04 |
| 4 | GO:0016274: protein-arginine N-methyltransferase activity | 1.93E-04 |
| 5 | GO:0004016: adenylate cyclase activity | 1.93E-04 |
| 6 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 4.22E-04 |
| 7 | GO:0008805: carbon-monoxide oxygenase activity | 4.33E-04 |
| 8 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 4.33E-04 |
| 9 | GO:0009884: cytokinin receptor activity | 4.33E-04 |
| 10 | GO:0003725: double-stranded RNA binding | 5.01E-04 |
| 11 | GO:0017150: tRNA dihydrouridine synthase activity | 7.06E-04 |
| 12 | GO:0016805: dipeptidase activity | 7.06E-04 |
| 13 | GO:0005034: osmosensor activity | 7.06E-04 |
| 14 | GO:0009041: uridylate kinase activity | 1.01E-03 |
| 15 | GO:0001872: (1->3)-beta-D-glucan binding | 1.01E-03 |
| 16 | GO:0030570: pectate lyase activity | 1.11E-03 |
| 17 | GO:0004930: G-protein coupled receptor activity | 1.34E-03 |
| 18 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.34E-03 |
| 19 | GO:0010011: auxin binding | 1.34E-03 |
| 20 | GO:0001085: RNA polymerase II transcription factor binding | 1.51E-03 |
| 21 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.70E-03 |
| 22 | GO:0019901: protein kinase binding | 1.73E-03 |
| 23 | GO:0031177: phosphopantetheine binding | 2.10E-03 |
| 24 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 2.10E-03 |
| 25 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.52E-03 |
| 26 | GO:0016832: aldehyde-lyase activity | 2.52E-03 |
| 27 | GO:0000035: acyl binding | 2.52E-03 |
| 28 | GO:0019900: kinase binding | 2.52E-03 |
| 29 | GO:0004124: cysteine synthase activity | 2.52E-03 |
| 30 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 3.43E-03 |
| 31 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 4.01E-03 |
| 32 | GO:0000989: transcription factor activity, transcription factor binding | 4.44E-03 |
| 33 | GO:0009672: auxin:proton symporter activity | 4.99E-03 |
| 34 | GO:0043565: sequence-specific DNA binding | 5.04E-03 |
| 35 | GO:0004673: protein histidine kinase activity | 5.55E-03 |
| 36 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 6.73E-03 |
| 37 | GO:0003677: DNA binding | 6.77E-03 |
| 38 | GO:0010329: auxin efflux transmembrane transporter activity | 7.36E-03 |
| 39 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.36E-03 |
| 40 | GO:0000155: phosphorelay sensor kinase activity | 7.36E-03 |
| 41 | GO:0005217: intracellular ligand-gated ion channel activity | 8.67E-03 |
| 42 | GO:0004970: ionotropic glutamate receptor activity | 8.67E-03 |
| 43 | GO:0004190: aspartic-type endopeptidase activity | 8.67E-03 |
| 44 | GO:0004871: signal transducer activity | 1.01E-02 |
| 45 | GO:0043424: protein histidine kinase binding | 1.08E-02 |
| 46 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.15E-02 |
| 47 | GO:0003727: single-stranded RNA binding | 1.39E-02 |
| 48 | GO:0018024: histone-lysine N-methyltransferase activity | 1.47E-02 |
| 49 | GO:0016829: lyase activity | 1.48E-02 |
| 50 | GO:0016759: cellulose synthase activity | 2.18E-02 |
| 51 | GO:0008237: metallopeptidase activity | 2.27E-02 |
| 52 | GO:0005200: structural constituent of cytoskeleton | 2.27E-02 |
| 53 | GO:0030247: polysaccharide binding | 2.77E-02 |
| 54 | GO:0008168: methyltransferase activity | 2.81E-02 |
| 55 | GO:0016788: hydrolase activity, acting on ester bonds | 2.98E-02 |
| 56 | GO:0046872: metal ion binding | 3.09E-02 |
| 57 | GO:0015238: drug transmembrane transporter activity | 3.09E-02 |
| 58 | GO:0003682: chromatin binding | 3.09E-02 |
| 59 | GO:0005096: GTPase activator activity | 3.09E-02 |
| 60 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.20E-02 |
| 61 | GO:0004674: protein serine/threonine kinase activity | 3.20E-02 |
| 62 | GO:0003723: RNA binding | 3.22E-02 |
| 63 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.31E-02 |
| 64 | GO:0050660: flavin adenine dinucleotide binding | 3.38E-02 |
| 65 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.53E-02 |
| 66 | GO:0003697: single-stranded DNA binding | 3.53E-02 |
| 67 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 3.76E-02 |
| 68 | GO:0052689: carboxylic ester hydrolase activity | 4.00E-02 |
| 69 | GO:0004185: serine-type carboxypeptidase activity | 4.23E-02 |
| 70 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 4.32E-02 |
| 71 | GO:0043621: protein self-association | 4.47E-02 |
| 72 | GO:0042803: protein homodimerization activity | 4.53E-02 |
| 73 | GO:0015293: symporter activity | 4.59E-02 |
| 74 | GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding | 4.80E-02 |