Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G13100

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002084: protein depalmitoylation0.00E+00
2GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
3GO:0097250: mitochondrial respiratory chain supercomplex assembly0.00E+00
4GO:0046865: terpenoid transport0.00E+00
5GO:0010793: regulation of mRNA export from nucleus0.00E+00
6GO:0034756: regulation of iron ion transport0.00E+00
7GO:0009560: embryo sac egg cell differentiation0.00E+00
8GO:0006654: phosphatidic acid biosynthetic process0.00E+00
9GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
10GO:0006517: protein deglycosylation2.33E-05
11GO:1900056: negative regulation of leaf senescence3.51E-04
12GO:0009700: indole phytoalexin biosynthetic process3.86E-04
13GO:0002143: tRNA wobble position uridine thiolation3.86E-04
14GO:0098789: pre-mRNA cleavage required for polyadenylation3.86E-04
15GO:0010230: alternative respiration3.86E-04
16GO:0019673: GDP-mannose metabolic process3.86E-04
17GO:1902065: response to L-glutamate3.86E-04
18GO:0042868: antisense RNA metabolic process3.86E-04
19GO:0031123: RNA 3'-end processing3.86E-04
20GO:0015760: glucose-6-phosphate transport3.86E-04
21GO:0071076: RNA 3' uridylation3.86E-04
22GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.86E-04
23GO:0010120: camalexin biosynthetic process5.37E-04
24GO:0043066: negative regulation of apoptotic process8.38E-04
25GO:0015712: hexose phosphate transport8.38E-04
26GO:0008535: respiratory chain complex IV assembly8.38E-04
27GO:0051252: regulation of RNA metabolic process8.38E-04
28GO:0006996: organelle organization8.38E-04
29GO:0009156: ribonucleoside monophosphate biosynthetic process8.38E-04
30GO:0035335: peptidyl-tyrosine dephosphorylation8.38E-04
31GO:0015709: thiosulfate transport8.38E-04
32GO:0031204: posttranslational protein targeting to membrane, translocation8.38E-04
33GO:0071422: succinate transmembrane transport8.38E-04
34GO:0046939: nucleotide phosphorylation8.38E-04
35GO:1902066: regulation of cell wall pectin metabolic process8.38E-04
36GO:0050684: regulation of mRNA processing8.38E-04
37GO:0042853: L-alanine catabolic process8.38E-04
38GO:0009870: defense response signaling pathway, resistance gene-dependent8.85E-04
39GO:0009626: plant-type hypersensitive response9.34E-04
40GO:0009627: systemic acquired resistance1.14E-03
41GO:0015714: phosphoenolpyruvate transport1.36E-03
42GO:0080168: abscisic acid transport1.36E-03
43GO:0048586: regulation of long-day photoperiodism, flowering1.36E-03
44GO:0032922: circadian regulation of gene expression1.36E-03
45GO:0032784: regulation of DNA-templated transcription, elongation1.36E-03
46GO:0061158: 3'-UTR-mediated mRNA destabilization1.36E-03
47GO:0017006: protein-tetrapyrrole linkage1.36E-03
48GO:1901672: positive regulation of systemic acquired resistance1.36E-03
49GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.36E-03
50GO:0035436: triose phosphate transmembrane transport1.36E-03
51GO:0045836: positive regulation of meiotic nuclear division1.36E-03
52GO:0015783: GDP-fucose transport1.36E-03
53GO:0071494: cellular response to UV-C1.36E-03
54GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process1.36E-03
55GO:0015692: lead ion transport1.36E-03
56GO:0060968: regulation of gene silencing1.36E-03
57GO:0031022: nuclear migration along microfilament1.36E-03
58GO:0009225: nucleotide-sugar metabolic process1.66E-03
59GO:0042343: indole glucosinolate metabolic process1.66E-03
60GO:0010104: regulation of ethylene-activated signaling pathway1.96E-03
61GO:0010731: protein glutathionylation1.96E-03
62GO:0006516: glycoprotein catabolic process1.96E-03
63GO:0002679: respiratory burst involved in defense response1.96E-03
64GO:0006515: misfolded or incompletely synthesized protein catabolic process1.96E-03
65GO:0032877: positive regulation of DNA endoreduplication1.96E-03
66GO:0055089: fatty acid homeostasis1.96E-03
67GO:0060964: regulation of gene silencing by miRNA1.96E-03
68GO:0015729: oxaloacetate transport1.96E-03
69GO:0009584: detection of visible light1.96E-03
70GO:0098542: defense response to other organism2.49E-03
71GO:0006952: defense response2.56E-03
72GO:0051707: response to other organism2.60E-03
73GO:0001709: cell fate determination2.63E-03
74GO:0015713: phosphoglycerate transport2.63E-03
75GO:0010188: response to microbial phytotoxin2.63E-03
76GO:0009902: chloroplast relocation2.63E-03
77GO:0009165: nucleotide biosynthetic process2.63E-03
78GO:0010109: regulation of photosynthesis2.63E-03
79GO:0033320: UDP-D-xylose biosynthetic process2.63E-03
80GO:0010363: regulation of plant-type hypersensitive response2.63E-03
81GO:0022622: root system development2.63E-03
82GO:0030433: ubiquitin-dependent ERAD pathway2.73E-03
83GO:0071456: cellular response to hypoxia2.73E-03
84GO:0009636: response to toxic substance3.01E-03
85GO:0045927: positive regulation of growth3.37E-03
86GO:0071423: malate transmembrane transport3.37E-03
87GO:0009435: NAD biosynthetic process3.37E-03
88GO:0042742: defense response to bacterium3.66E-03
89GO:0042176: regulation of protein catabolic process4.17E-03
90GO:0035435: phosphate ion transmembrane transport4.17E-03
91GO:0009643: photosynthetic acclimation4.17E-03
92GO:0006561: proline biosynthetic process4.17E-03
93GO:0006777: Mo-molybdopterin cofactor biosynthetic process4.17E-03
94GO:0042732: D-xylose metabolic process4.17E-03
95GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity4.17E-03
96GO:0048544: recognition of pollen4.40E-03
97GO:0006623: protein targeting to vacuole4.71E-03
98GO:0010193: response to ozone5.05E-03
99GO:0031047: gene silencing by RNA5.39E-03
100GO:2000014: regulation of endosperm development5.94E-03
101GO:0008272: sulfate transport5.94E-03
102GO:0007050: cell cycle arrest5.94E-03
103GO:0080186: developmental vegetative growth5.94E-03
104GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline6.90E-03
105GO:0009819: drought recovery6.90E-03
106GO:0006491: N-glycan processing6.90E-03
107GO:1900150: regulation of defense response to fungus6.90E-03
108GO:0050821: protein stabilization6.90E-03
109GO:0051607: defense response to virus6.90E-03
110GO:0009816: defense response to bacterium, incompatible interaction7.73E-03
111GO:0001558: regulation of cell growth7.92E-03
112GO:0010204: defense response signaling pathway, resistance gene-independent7.92E-03
113GO:0030968: endoplasmic reticulum unfolded protein response7.92E-03
114GO:0006002: fructose 6-phosphate metabolic process7.92E-03
115GO:0010112: regulation of systemic acquired resistance8.99E-03
116GO:0048589: developmental growth8.99E-03
117GO:0015780: nucleotide-sugar transport8.99E-03
118GO:0009817: defense response to fungus, incompatible interaction9.56E-03
119GO:0048268: clathrin coat assembly1.01E-02
120GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.01E-02
121GO:0008202: steroid metabolic process1.01E-02
122GO:0043067: regulation of programmed cell death1.01E-02
123GO:0090332: stomatal closure1.01E-02
124GO:0009407: toxin catabolic process1.06E-02
125GO:0010043: response to zinc ion1.11E-02
126GO:0043069: negative regulation of programmed cell death1.13E-02
127GO:0000724: double-strand break repair via homologous recombination1.16E-02
128GO:0045087: innate immune response1.21E-02
129GO:0009682: induced systemic resistance1.25E-02
130GO:0009089: lysine biosynthetic process via diaminopimelate1.25E-02
131GO:0006816: calcium ion transport1.25E-02
132GO:0016925: protein sumoylation1.38E-02
133GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.38E-02
134GO:0008361: regulation of cell size1.38E-02
135GO:0006631: fatty acid metabolic process1.45E-02
136GO:0009617: response to bacterium1.50E-02
137GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.51E-02
138GO:0010102: lateral root morphogenesis1.51E-02
139GO:0006626: protein targeting to mitochondrion1.51E-02
140GO:2000028: regulation of photoperiodism, flowering1.51E-02
141GO:0009718: anthocyanin-containing compound biosynthetic process1.51E-02
142GO:0000209: protein polyubiquitination1.63E-02
143GO:0007034: vacuolar transport1.64E-02
144GO:0007030: Golgi organization1.78E-02
145GO:0010039: response to iron ion1.78E-02
146GO:0071732: cellular response to nitric oxide1.78E-02
147GO:0070588: calcium ion transmembrane transport1.78E-02
148GO:0010053: root epidermal cell differentiation1.78E-02
149GO:0006855: drug transmembrane transport1.83E-02
150GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.90E-02
151GO:0034976: response to endoplasmic reticulum stress1.92E-02
152GO:0006636: unsaturated fatty acid biosynthetic process1.92E-02
153GO:0009863: salicylic acid mediated signaling pathway2.07E-02
154GO:0006289: nucleotide-excision repair2.07E-02
155GO:0005992: trehalose biosynthetic process2.07E-02
156GO:0006487: protein N-linked glycosylation2.07E-02
157GO:0009116: nucleoside metabolic process2.07E-02
158GO:0009809: lignin biosynthetic process2.12E-02
159GO:0048278: vesicle docking2.37E-02
160GO:0031408: oxylipin biosynthetic process2.37E-02
161GO:0051321: meiotic cell cycle2.37E-02
162GO:0006334: nucleosome assembly2.37E-02
163GO:0009814: defense response, incompatible interaction2.53E-02
164GO:2000022: regulation of jasmonic acid mediated signaling pathway2.53E-02
165GO:0010017: red or far-red light signaling pathway2.53E-02
166GO:0071369: cellular response to ethylene stimulus2.69E-02
167GO:0009625: response to insect2.69E-02
168GO:0006012: galactose metabolic process2.69E-02
169GO:0045492: xylan biosynthetic process2.86E-02
170GO:0009306: protein secretion2.86E-02
171GO:0042147: retrograde transport, endosome to Golgi3.03E-02
172GO:0044550: secondary metabolite biosynthetic process3.03E-02
173GO:0009958: positive gravitropism3.38E-02
174GO:0009960: endosperm development3.38E-02
175GO:0061025: membrane fusion3.55E-02
176GO:0009749: response to glucose3.74E-02
177GO:0002229: defense response to oomycetes3.92E-02
178GO:0000302: response to reactive oxygen species3.92E-02
179GO:0006891: intra-Golgi vesicle-mediated transport3.92E-02
180GO:0009058: biosynthetic process3.98E-02
181GO:0030163: protein catabolic process4.30E-02
182GO:0071281: cellular response to iron ion4.30E-02
183GO:1901657: glycosyl compound metabolic process4.30E-02
184GO:0009751: response to salicylic acid4.34E-02
185GO:0006511: ubiquitin-dependent protein catabolic process4.62E-02
186GO:0006904: vesicle docking involved in exocytosis4.69E-02
187GO:0007267: cell-cell signaling4.69E-02
188GO:0016579: protein deubiquitination4.89E-02
189GO:0000910: cytokinesis4.89E-02
RankGO TermAdjusted P value
1GO:0008092: cytoskeletal protein binding0.00E+00
2GO:0050513: glycoprotein 2-beta-D-xylosyltransferase activity0.00E+00
3GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
4GO:0061605: molybdopterin-synthase adenylyltransferase activity0.00E+00
5GO:0030621: U4 snRNA binding0.00E+00
6GO:0034338: short-chain carboxylesterase activity0.00E+00
7GO:0061604: molybdopterin-synthase sulfurtransferase activity0.00E+00
8GO:0044318: L-aspartate:fumarate oxidoreductase activity0.00E+00
9GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
10GO:0008734: L-aspartate oxidase activity0.00E+00
11GO:0051670: inulinase activity0.00E+00
12GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
13GO:0016621: cinnamoyl-CoA reductase activity3.51E-04
14GO:0051669: fructan beta-fructosidase activity3.86E-04
15GO:1990381: ubiquitin-specific protease binding3.86E-04
16GO:0008446: GDP-mannose 4,6-dehydratase activity3.86E-04
17GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity3.86E-04
18GO:0031219: levanase activity3.86E-04
19GO:0010285: L,L-diaminopimelate aminotransferase activity3.86E-04
20GO:0050265: RNA uridylyltransferase activity3.86E-04
21GO:0008805: carbon-monoxide oxygenase activity8.38E-04
22GO:0008428: ribonuclease inhibitor activity8.38E-04
23GO:0004338: glucan exo-1,3-beta-glucosidase activity8.38E-04
24GO:0015117: thiosulfate transmembrane transporter activity8.38E-04
25GO:1901677: phosphate transmembrane transporter activity8.38E-04
26GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity8.38E-04
27GO:0004566: beta-glucuronidase activity8.38E-04
28GO:0009883: red or far-red light photoreceptor activity8.38E-04
29GO:0051879: Hsp90 protein binding8.38E-04
30GO:0015152: glucose-6-phosphate transmembrane transporter activity8.38E-04
31GO:0016301: kinase activity1.14E-03
32GO:0015141: succinate transmembrane transporter activity1.36E-03
33GO:0008020: G-protein coupled photoreceptor activity1.36E-03
34GO:0071917: triose-phosphate transmembrane transporter activity1.36E-03
35GO:0005457: GDP-fucose transmembrane transporter activity1.36E-03
36GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.36E-03
37GO:0005310: dicarboxylic acid transmembrane transporter activity1.36E-03
38GO:0004867: serine-type endopeptidase inhibitor activity1.66E-03
39GO:0015131: oxaloacetate transmembrane transporter activity1.96E-03
40GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.96E-03
41GO:0004792: thiosulfate sulfurtransferase activity1.96E-03
42GO:0017077: oxidative phosphorylation uncoupler activity1.96E-03
43GO:0004749: ribose phosphate diphosphokinase activity1.96E-03
44GO:0019201: nucleotide kinase activity1.96E-03
45GO:0015297: antiporter activity2.40E-03
46GO:0009916: alternative oxidase activity2.63E-03
47GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway2.63E-03
48GO:0015120: phosphoglycerate transmembrane transporter activity2.63E-03
49GO:0015368: calcium:cation antiporter activity2.63E-03
50GO:0015369: calcium:proton antiporter activity2.63E-03
51GO:0008948: oxaloacetate decarboxylase activity3.37E-03
52GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.37E-03
53GO:0004623: phospholipase A2 activity3.37E-03
54GO:0042285: xylosyltransferase activity3.37E-03
55GO:0004040: amidase activity3.37E-03
56GO:0031386: protein tag3.37E-03
57GO:0017070: U6 snRNA binding3.37E-03
58GO:0008641: small protein activating enzyme activity3.37E-03
59GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity4.17E-03
60GO:0035252: UDP-xylosyltransferase activity4.17E-03
61GO:0048040: UDP-glucuronate decarboxylase activity4.17E-03
62GO:0008474: palmitoyl-(protein) hydrolase activity4.17E-03
63GO:0030246: carbohydrate binding4.89E-03
64GO:0004017: adenylate kinase activity5.02E-03
65GO:0004656: procollagen-proline 4-dioxygenase activity5.02E-03
66GO:0070403: NAD+ binding5.02E-03
67GO:0043531: ADP binding5.79E-03
68GO:0009881: photoreceptor activity5.94E-03
69GO:0003872: 6-phosphofructokinase activity5.94E-03
70GO:0015140: malate transmembrane transporter activity5.94E-03
71GO:0004620: phospholipase activity5.94E-03
72GO:0102425: myricetin 3-O-glucosyltransferase activity5.94E-03
73GO:0102360: daphnetin 3-O-glucosyltransferase activity5.94E-03
74GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity6.51E-03
75GO:0047893: flavonol 3-O-glucosyltransferase activity6.90E-03
76GO:0004525: ribonuclease III activity6.90E-03
77GO:0015491: cation:cation antiporter activity6.90E-03
78GO:0008312: 7S RNA binding6.90E-03
79GO:0004034: aldose 1-epimerase activity6.90E-03
80GO:0008142: oxysterol binding7.92E-03
81GO:0030247: polysaccharide binding8.62E-03
82GO:0031490: chromatin DNA binding1.01E-02
83GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.03E-02
84GO:0030234: enzyme regulator activity1.13E-02
85GO:0004568: chitinase activity1.13E-02
86GO:0005545: 1-phosphatidylinositol binding1.13E-02
87GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.21E-02
88GO:0047372: acylglycerol lipase activity1.25E-02
89GO:0015116: sulfate transmembrane transporter activity1.38E-02
90GO:0004565: beta-galactosidase activity1.51E-02
91GO:0005315: inorganic phosphate transmembrane transporter activity1.51E-02
92GO:0000155: phosphorelay sensor kinase activity1.51E-02
93GO:0004364: glutathione transferase activity1.51E-02
94GO:0005388: calcium-transporting ATPase activity1.51E-02
95GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.64E-02
96GO:0031624: ubiquitin conjugating enzyme binding1.64E-02
97GO:0003712: transcription cofactor activity1.78E-02
98GO:0004725: protein tyrosine phosphatase activity1.92E-02
99GO:0031418: L-ascorbic acid binding2.07E-02
100GO:0031625: ubiquitin protein ligase binding2.35E-02
101GO:0036459: thiol-dependent ubiquitinyl hydrolase activity2.37E-02
102GO:0004707: MAP kinase activity2.37E-02
103GO:0035251: UDP-glucosyltransferase activity2.37E-02
104GO:0016779: nucleotidyltransferase activity2.53E-02
105GO:0008810: cellulase activity2.69E-02
106GO:0022857: transmembrane transporter activity2.84E-02
107GO:0003756: protein disulfide isomerase activity2.86E-02
108GO:0004499: N,N-dimethylaniline monooxygenase activity2.86E-02
109GO:0003727: single-stranded RNA binding2.86E-02
110GO:0030276: clathrin binding3.38E-02
111GO:0010181: FMN binding3.55E-02
112GO:0016853: isomerase activity3.55E-02
113GO:0004872: receptor activity3.74E-02
114GO:0004843: thiol-dependent ubiquitin-specific protease activity3.92E-02
115GO:0030170: pyridoxal phosphate binding4.19E-02
116GO:0008483: transaminase activity4.69E-02
117GO:0019825: oxygen binding4.93E-02
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Gene type



Gene DE type