Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G12685

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0034337: RNA folding0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0035998: 7,8-dihydroneopterin 3'-triphosphate biosynthetic process0.00E+00
5GO:0090470: shoot organ boundary specification0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0090279: regulation of calcium ion import0.00E+00
9GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
10GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
11GO:0042820: vitamin B6 catabolic process0.00E+00
12GO:0018023: peptidyl-lysine trimethylation0.00E+00
13GO:0071474: cellular hyperosmotic response0.00E+00
14GO:0015995: chlorophyll biosynthetic process7.56E-10
15GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.41E-07
16GO:0010021: amylopectin biosynthetic process9.83E-07
17GO:0010207: photosystem II assembly5.07E-06
18GO:0006729: tetrahydrobiopterin biosynthetic process7.51E-06
19GO:0048564: photosystem I assembly1.72E-05
20GO:0015979: photosynthesis2.10E-05
21GO:0071482: cellular response to light stimulus2.45E-05
22GO:0006783: heme biosynthetic process3.35E-05
23GO:0006782: protoporphyrinogen IX biosynthetic process5.74E-05
24GO:0010027: thylakoid membrane organization1.34E-04
25GO:0045038: protein import into chloroplast thylakoid membrane1.54E-04
26GO:0009735: response to cytokinin2.04E-04
27GO:1901259: chloroplast rRNA processing2.97E-04
28GO:0055114: oxidation-reduction process3.73E-04
29GO:1902458: positive regulation of stomatal opening4.10E-04
30GO:0048363: mucilage pectin metabolic process4.10E-04
31GO:0009443: pyridoxal 5'-phosphate salvage4.10E-04
32GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.10E-04
33GO:0043953: protein transport by the Tat complex4.10E-04
34GO:0043489: RNA stabilization4.10E-04
35GO:0015671: oxygen transport4.10E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process4.10E-04
37GO:0000481: maturation of 5S rRNA4.10E-04
38GO:1904964: positive regulation of phytol biosynthetic process4.10E-04
39GO:0065002: intracellular protein transmembrane transport4.10E-04
40GO:0043686: co-translational protein modification4.10E-04
41GO:0016559: peroxisome fission4.80E-04
42GO:0032544: plastid translation5.86E-04
43GO:0019252: starch biosynthetic process6.43E-04
44GO:0006779: porphyrin-containing compound biosynthetic process8.29E-04
45GO:1903426: regulation of reactive oxygen species biosynthetic process8.88E-04
46GO:0051262: protein tetramerization8.88E-04
47GO:0010275: NAD(P)H dehydrogenase complex assembly8.88E-04
48GO:1902326: positive regulation of chlorophyll biosynthetic process8.88E-04
49GO:1900871: chloroplast mRNA modification8.88E-04
50GO:0006435: threonyl-tRNA aminoacylation8.88E-04
51GO:0018026: peptidyl-lysine monomethylation8.88E-04
52GO:0000256: allantoin catabolic process8.88E-04
53GO:0071668: plant-type cell wall assembly8.88E-04
54GO:0080183: response to photooxidative stress8.88E-04
55GO:0009773: photosynthetic electron transport in photosystem I1.11E-03
56GO:0009658: chloroplast organization1.36E-03
57GO:0005977: glycogen metabolic process1.44E-03
58GO:0010136: ureide catabolic process1.44E-03
59GO:0034051: negative regulation of plant-type hypersensitive response1.44E-03
60GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.44E-03
61GO:0015940: pantothenate biosynthetic process1.44E-03
62GO:0044375: regulation of peroxisome size1.44E-03
63GO:0010371: regulation of gibberellin biosynthetic process2.08E-03
64GO:0006020: inositol metabolic process2.08E-03
65GO:0009102: biotin biosynthetic process2.08E-03
66GO:0009152: purine ribonucleotide biosynthetic process2.08E-03
67GO:0046653: tetrahydrofolate metabolic process2.08E-03
68GO:0009052: pentose-phosphate shunt, non-oxidative branch2.08E-03
69GO:0033014: tetrapyrrole biosynthetic process2.08E-03
70GO:0006145: purine nucleobase catabolic process2.08E-03
71GO:0010731: protein glutathionylation2.08E-03
72GO:0006424: glutamyl-tRNA aminoacylation2.08E-03
73GO:1901332: negative regulation of lateral root development2.08E-03
74GO:2001141: regulation of RNA biosynthetic process2.08E-03
75GO:0006631: fatty acid metabolic process2.62E-03
76GO:0061077: chaperone-mediated protein folding2.73E-03
77GO:0009765: photosynthesis, light harvesting2.80E-03
78GO:0006536: glutamate metabolic process2.80E-03
79GO:0006021: inositol biosynthetic process2.80E-03
80GO:0019748: secondary metabolic process2.98E-03
81GO:0016123: xanthophyll biosynthetic process3.59E-03
82GO:0000304: response to singlet oxygen3.59E-03
83GO:0080110: sporopollenin biosynthetic process3.59E-03
84GO:0016120: carotene biosynthetic process3.59E-03
85GO:0032543: mitochondrial translation3.59E-03
86GO:0006564: L-serine biosynthetic process3.59E-03
87GO:0010236: plastoquinone biosynthetic process3.59E-03
88GO:0031365: N-terminal protein amino acid modification3.59E-03
89GO:0006810: transport3.72E-03
90GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.44E-03
91GO:0006655: phosphatidylglycerol biosynthetic process4.44E-03
92GO:0010190: cytochrome b6f complex assembly4.44E-03
93GO:0046855: inositol phosphate dephosphorylation4.44E-03
94GO:0046654: tetrahydrofolate biosynthetic process5.35E-03
95GO:0009854: oxidative photosynthetic carbon pathway5.35E-03
96GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.32E-03
97GO:0006412: translation6.44E-03
98GO:0005978: glycogen biosynthetic process7.35E-03
99GO:0032508: DNA duplex unwinding7.35E-03
100GO:2000070: regulation of response to water deprivation7.35E-03
101GO:0017004: cytochrome complex assembly8.43E-03
102GO:0015996: chlorophyll catabolic process8.43E-03
103GO:0007186: G-protein coupled receptor signaling pathway8.43E-03
104GO:0006526: arginine biosynthetic process8.43E-03
105GO:0010206: photosystem II repair9.58E-03
106GO:0019432: triglyceride biosynthetic process9.58E-03
107GO:0009817: defense response to fungus, incompatible interaction1.05E-02
108GO:0005982: starch metabolic process1.08E-02
109GO:0048354: mucilage biosynthetic process involved in seed coat development1.08E-02
110GO:0031425: chloroplast RNA processing1.08E-02
111GO:0006535: cysteine biosynthetic process from serine1.20E-02
112GO:0007568: aging1.21E-02
113GO:0009853: photorespiration1.33E-02
114GO:0009089: lysine biosynthetic process via diaminopimelate1.33E-02
115GO:0045087: innate immune response1.33E-02
116GO:0008285: negative regulation of cell proliferation1.33E-02
117GO:0006352: DNA-templated transcription, initiation1.33E-02
118GO:0009451: RNA modification1.38E-02
119GO:0006790: sulfur compound metabolic process1.47E-02
120GO:0016024: CDP-diacylglycerol biosynthetic process1.47E-02
121GO:0045037: protein import into chloroplast stroma1.47E-02
122GO:0018107: peptidyl-threonine phosphorylation1.61E-02
123GO:0006094: gluconeogenesis1.61E-02
124GO:0009767: photosynthetic electron transport chain1.61E-02
125GO:0006807: nitrogen compound metabolic process1.61E-02
126GO:0009266: response to temperature stimulus1.75E-02
127GO:0010020: chloroplast fission1.75E-02
128GO:0007031: peroxisome organization1.90E-02
129GO:0046854: phosphatidylinositol phosphorylation1.90E-02
130GO:0009636: response to toxic substance1.93E-02
131GO:0019762: glucosinolate catabolic process2.05E-02
132GO:0006636: unsaturated fatty acid biosynthetic process2.05E-02
133GO:0019344: cysteine biosynthetic process2.21E-02
134GO:0006289: nucleotide-excision repair2.21E-02
135GO:0010073: meristem maintenance2.37E-02
136GO:0007017: microtubule-based process2.37E-02
137GO:0042254: ribosome biogenesis2.39E-02
138GO:0048511: rhythmic process2.53E-02
139GO:0031408: oxylipin biosynthetic process2.53E-02
140GO:0016114: terpenoid biosynthetic process2.53E-02
141GO:0016226: iron-sulfur cluster assembly2.70E-02
142GO:0035428: hexose transmembrane transport2.70E-02
143GO:0080092: regulation of pollen tube growth2.70E-02
144GO:0005975: carbohydrate metabolic process2.85E-02
145GO:0009625: response to insect2.87E-02
146GO:0010227: floral organ abscission2.87E-02
147GO:0010584: pollen exine formation3.05E-02
148GO:0016117: carotenoid biosynthetic process3.23E-02
149GO:0042631: cellular response to water deprivation3.41E-02
150GO:0000271: polysaccharide biosynthetic process3.41E-02
151GO:0046323: glucose import3.60E-02
152GO:0045489: pectin biosynthetic process3.60E-02
153GO:0006520: cellular amino acid metabolic process3.60E-02
154GO:0010182: sugar mediated signaling pathway3.60E-02
155GO:0009791: post-embryonic development3.99E-02
156GO:0000302: response to reactive oxygen species4.18E-02
157GO:0009058: biosynthetic process4.35E-02
158GO:0042744: hydrogen peroxide catabolic process4.69E-02
159GO:0009567: double fertilization forming a zygote and endosperm4.79E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0004076: biotin synthase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0090711: FMN hydrolase activity0.00E+00
6GO:0019144: ADP-sugar diphosphatase activity0.00E+00
7GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
8GO:0003934: GTP cyclohydrolase I activity0.00E+00
9GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
10GO:0050613: delta14-sterol reductase activity0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0045435: lycopene epsilon cyclase activity0.00E+00
13GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
14GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
15GO:0008465: glycerate dehydrogenase activity0.00E+00
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.83E-07
17GO:0019843: rRNA binding4.84E-06
18GO:0008266: poly(U) RNA binding5.07E-06
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.81E-06
20GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.51E-06
21GO:0005528: FK506 binding1.06E-05
22GO:0070402: NADPH binding2.60E-05
23GO:0016851: magnesium chelatase activity5.66E-05
24GO:0048038: quinone binding6.76E-05
25GO:0031072: heat shock protein binding1.10E-04
26GO:0003746: translation elongation factor activity3.17E-04
27GO:0016784: 3-mercaptopyruvate sulfurtransferase activity4.10E-04
28GO:0005344: oxygen transporter activity4.10E-04
29GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.10E-04
30GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.10E-04
31GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.10E-04
32GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.10E-04
33GO:0005227: calcium activated cation channel activity4.10E-04
34GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity4.10E-04
35GO:0016776: phosphotransferase activity, phosphate group as acceptor4.10E-04
36GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.10E-04
37GO:0080042: ADP-glucose pyrophosphohydrolase activity4.10E-04
38GO:0004856: xylulokinase activity4.10E-04
39GO:0004325: ferrochelatase activity4.10E-04
40GO:0042586: peptide deformylase activity4.10E-04
41GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.10E-04
42GO:0005080: protein kinase C binding4.10E-04
43GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.10E-04
44GO:0004033: aldo-keto reductase (NADP) activity4.80E-04
45GO:0042389: omega-3 fatty acid desaturase activity8.88E-04
46GO:0080041: ADP-ribose pyrophosphohydrolase activity8.88E-04
47GO:0009977: proton motive force dependent protein transmembrane transporter activity8.88E-04
48GO:0004617: phosphoglycerate dehydrogenase activity8.88E-04
49GO:0052832: inositol monophosphate 3-phosphatase activity8.88E-04
50GO:0033201: alpha-1,4-glucan synthase activity8.88E-04
51GO:0003844: 1,4-alpha-glucan branching enzyme activity8.88E-04
52GO:0016630: protochlorophyllide reductase activity8.88E-04
53GO:0008934: inositol monophosphate 1-phosphatase activity8.88E-04
54GO:0052833: inositol monophosphate 4-phosphatase activity8.88E-04
55GO:0004829: threonine-tRNA ligase activity8.88E-04
56GO:0019156: isoamylase activity8.88E-04
57GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.88E-04
58GO:0050017: L-3-cyanoalanine synthase activity8.88E-04
59GO:0016491: oxidoreductase activity9.92E-04
60GO:0008864: formyltetrahydrofolate deformylase activity1.44E-03
61GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.44E-03
62GO:0043169: cation binding1.44E-03
63GO:0004373: glycogen (starch) synthase activity1.44E-03
64GO:0005504: fatty acid binding1.44E-03
65GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.44E-03
66GO:0004751: ribose-5-phosphate isomerase activity1.44E-03
67GO:0030267: glyoxylate reductase (NADP) activity1.44E-03
68GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.44E-03
69GO:0004351: glutamate decarboxylase activity2.08E-03
70GO:0004792: thiosulfate sulfurtransferase activity2.08E-03
71GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.08E-03
72GO:0043023: ribosomal large subunit binding2.08E-03
73GO:0001053: plastid sigma factor activity2.80E-03
74GO:0016987: sigma factor activity2.80E-03
75GO:0070628: proteasome binding2.80E-03
76GO:0045430: chalcone isomerase activity2.80E-03
77GO:0009011: starch synthase activity2.80E-03
78GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.80E-03
79GO:0043495: protein anchor2.80E-03
80GO:0016279: protein-lysine N-methyltransferase activity2.80E-03
81GO:0005525: GTP binding2.84E-03
82GO:0003735: structural constituent of ribosome2.88E-03
83GO:0008374: O-acyltransferase activity3.59E-03
84GO:0003959: NADPH dehydrogenase activity3.59E-03
85GO:0016773: phosphotransferase activity, alcohol group as acceptor3.59E-03
86GO:0051287: NAD binding3.72E-03
87GO:0003729: mRNA binding3.84E-03
88GO:0003723: RNA binding4.41E-03
89GO:0004332: fructose-bisphosphate aldolase activity4.44E-03
90GO:0031593: polyubiquitin binding4.44E-03
91GO:0004130: cytochrome-c peroxidase activity4.44E-03
92GO:0004556: alpha-amylase activity4.44E-03
93GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.44E-03
94GO:0004124: cysteine synthase activity5.35E-03
95GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.35E-03
96GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.35E-03
97GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.35E-03
98GO:0005261: cation channel activity5.35E-03
99GO:0019899: enzyme binding6.32E-03
100GO:0051082: unfolded protein binding6.68E-03
101GO:0008312: 7S RNA binding7.35E-03
102GO:0008135: translation factor activity, RNA binding8.43E-03
103GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.43E-03
104GO:0016787: hydrolase activity9.02E-03
105GO:0004721: phosphoprotein phosphatase activity9.44E-03
106GO:0071949: FAD binding9.58E-03
107GO:0030170: pyridoxal phosphate binding1.02E-02
108GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.08E-02
109GO:0005089: Rho guanyl-nucleotide exchange factor activity1.33E-02
110GO:0003924: GTPase activity1.45E-02
111GO:0004565: beta-galactosidase activity1.61E-02
112GO:0004364: glutathione transferase activity1.65E-02
113GO:0004185: serine-type carboxypeptidase activity1.72E-02
114GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.75E-02
115GO:0042802: identical protein binding1.82E-02
116GO:0005198: structural molecule activity1.93E-02
117GO:0051536: iron-sulfur cluster binding2.21E-02
118GO:0043130: ubiquitin binding2.21E-02
119GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.70E-02
120GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.84E-02
121GO:0022891: substrate-specific transmembrane transporter activity2.87E-02
122GO:0003756: protein disulfide isomerase activity3.05E-02
123GO:0005509: calcium ion binding3.12E-02
124GO:0008080: N-acetyltransferase activity3.60E-02
125GO:0005355: glucose transmembrane transporter activity3.79E-02
126GO:0050662: coenzyme binding3.79E-02
127GO:0016740: transferase activity4.51E-02
128GO:0004252: serine-type endopeptidase activity4.58E-02
129GO:0003684: damaged DNA binding4.79E-02
130GO:0015144: carbohydrate transmembrane transporter activity4.93E-02
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Gene type



Gene DE type