GO Enrichment Analysis of Co-expressed Genes with
AT3G12110
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903508: positive regulation of nucleic acid-templated transcription | 0.00E+00 |
| 2 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 3 | GO:0036265: RNA (guanine-N7)-methylation | 0.00E+00 |
| 4 | GO:0097275: cellular ammonia homeostasis | 0.00E+00 |
| 5 | GO:0080094: response to trehalose-6-phosphate | 0.00E+00 |
| 6 | GO:0051924: regulation of calcium ion transport | 0.00E+00 |
| 7 | GO:0031054: pre-miRNA processing | 0.00E+00 |
| 8 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 9 | GO:0008618: 7-methylguanosine metabolic process | 0.00E+00 |
| 10 | GO:2001295: malonyl-CoA biosynthetic process | 2.75E-06 |
| 11 | GO:0006021: inositol biosynthetic process | 1.22E-05 |
| 12 | GO:0009904: chloroplast accumulation movement | 2.01E-05 |
| 13 | GO:0009903: chloroplast avoidance movement | 4.28E-05 |
| 14 | GO:0016032: viral process | 6.93E-05 |
| 15 | GO:0010206: photosystem II repair | 1.17E-04 |
| 16 | GO:0006659: phosphatidylserine biosynthetic process | 1.20E-04 |
| 17 | GO:0043087: regulation of GTPase activity | 1.20E-04 |
| 18 | GO:0010028: xanthophyll cycle | 1.20E-04 |
| 19 | GO:0000305: response to oxygen radical | 1.20E-04 |
| 20 | GO:0051171: regulation of nitrogen compound metabolic process | 1.20E-04 |
| 21 | GO:0010362: negative regulation of anion channel activity by blue light | 1.20E-04 |
| 22 | GO:0006169: adenosine salvage | 1.20E-04 |
| 23 | GO:0031426: polycistronic mRNA processing | 1.20E-04 |
| 24 | GO:0018298: protein-chromophore linkage | 1.60E-04 |
| 25 | GO:0006633: fatty acid biosynthetic process | 1.63E-04 |
| 26 | GO:0007623: circadian rhythm | 1.91E-04 |
| 27 | GO:0009637: response to blue light | 2.23E-04 |
| 28 | GO:0010155: regulation of proton transport | 2.77E-04 |
| 29 | GO:0030187: melatonin biosynthetic process | 2.77E-04 |
| 30 | GO:0043153: entrainment of circadian clock by photoperiod | 2.77E-04 |
| 31 | GO:0010020: chloroplast fission | 2.94E-04 |
| 32 | GO:0080147: root hair cell development | 4.09E-04 |
| 33 | GO:0007017: microtubule-based process | 4.51E-04 |
| 34 | GO:0000913: preprophase band assembly | 4.58E-04 |
| 35 | GO:0031022: nuclear migration along microfilament | 4.58E-04 |
| 36 | GO:0010498: proteasomal protein catabolic process | 4.58E-04 |
| 37 | GO:0009405: pathogenesis | 4.58E-04 |
| 38 | GO:0010589: leaf proximal/distal pattern formation | 4.58E-04 |
| 39 | GO:0080055: low-affinity nitrate transport | 4.58E-04 |
| 40 | GO:0009416: response to light stimulus | 4.76E-04 |
| 41 | GO:0043572: plastid fission | 6.57E-04 |
| 42 | GO:0010239: chloroplast mRNA processing | 6.57E-04 |
| 43 | GO:0006164: purine nucleotide biosynthetic process | 6.57E-04 |
| 44 | GO:0010255: glucose mediated signaling pathway | 6.57E-04 |
| 45 | GO:0046739: transport of virus in multicellular host | 6.57E-04 |
| 46 | GO:0007018: microtubule-based movement | 8.58E-04 |
| 47 | GO:2000306: positive regulation of photomorphogenesis | 8.72E-04 |
| 48 | GO:0035279: mRNA cleavage involved in gene silencing by miRNA | 8.72E-04 |
| 49 | GO:0008295: spermidine biosynthetic process | 8.72E-04 |
| 50 | GO:0006749: glutathione metabolic process | 8.72E-04 |
| 51 | GO:0009902: chloroplast relocation | 8.72E-04 |
| 52 | GO:0009791: post-embryonic development | 9.17E-04 |
| 53 | GO:1902183: regulation of shoot apical meristem development | 1.10E-03 |
| 54 | GO:0044209: AMP salvage | 1.10E-03 |
| 55 | GO:0010158: abaxial cell fate specification | 1.10E-03 |
| 56 | GO:0030163: protein catabolic process | 1.11E-03 |
| 57 | GO:0010405: arabinogalactan protein metabolic process | 1.35E-03 |
| 58 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 1.35E-03 |
| 59 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.35E-03 |
| 60 | GO:0045962: positive regulation of development, heterochronic | 1.35E-03 |
| 61 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 1.35E-03 |
| 62 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.35E-03 |
| 63 | GO:0046855: inositol phosphate dephosphorylation | 1.35E-03 |
| 64 | GO:0030488: tRNA methylation | 1.61E-03 |
| 65 | GO:0042372: phylloquinone biosynthetic process | 1.61E-03 |
| 66 | GO:0048280: vesicle fusion with Golgi apparatus | 1.61E-03 |
| 67 | GO:0015693: magnesium ion transport | 1.89E-03 |
| 68 | GO:0035196: production of miRNAs involved in gene silencing by miRNA | 1.89E-03 |
| 69 | GO:0006400: tRNA modification | 1.89E-03 |
| 70 | GO:0006811: ion transport | 1.99E-03 |
| 71 | GO:0016559: peroxisome fission | 2.19E-03 |
| 72 | GO:0010078: maintenance of root meristem identity | 2.19E-03 |
| 73 | GO:0043562: cellular response to nitrogen levels | 2.50E-03 |
| 74 | GO:0006189: 'de novo' IMP biosynthetic process | 2.82E-03 |
| 75 | GO:0098656: anion transmembrane transport | 2.82E-03 |
| 76 | GO:0048507: meristem development | 2.82E-03 |
| 77 | GO:2000024: regulation of leaf development | 2.82E-03 |
| 78 | GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 3.16E-03 |
| 79 | GO:0009638: phototropism | 3.16E-03 |
| 80 | GO:0010267: production of ta-siRNAs involved in RNA interference | 3.16E-03 |
| 81 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.16E-03 |
| 82 | GO:0043069: negative regulation of programmed cell death | 3.51E-03 |
| 83 | GO:0006896: Golgi to vacuole transport | 3.51E-03 |
| 84 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.88E-03 |
| 85 | GO:0009684: indoleacetic acid biosynthetic process | 3.88E-03 |
| 86 | GO:0000038: very long-chain fatty acid metabolic process | 3.88E-03 |
| 87 | GO:0006790: sulfur compound metabolic process | 4.26E-03 |
| 88 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.26E-03 |
| 89 | GO:0009767: photosynthetic electron transport chain | 4.64E-03 |
| 90 | GO:0010588: cotyledon vascular tissue pattern formation | 4.64E-03 |
| 91 | GO:0030048: actin filament-based movement | 4.64E-03 |
| 92 | GO:0009785: blue light signaling pathway | 4.64E-03 |
| 93 | GO:0006006: glucose metabolic process | 4.64E-03 |
| 94 | GO:0048467: gynoecium development | 5.04E-03 |
| 95 | GO:0010143: cutin biosynthetic process | 5.04E-03 |
| 96 | GO:0019253: reductive pentose-phosphate cycle | 5.04E-03 |
| 97 | GO:0046854: phosphatidylinositol phosphorylation | 5.46E-03 |
| 98 | GO:0019853: L-ascorbic acid biosynthetic process | 5.46E-03 |
| 99 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.88E-03 |
| 100 | GO:0000027: ribosomal large subunit assembly | 6.32E-03 |
| 101 | GO:0009944: polarity specification of adaxial/abaxial axis | 6.32E-03 |
| 102 | GO:0010187: negative regulation of seed germination | 6.32E-03 |
| 103 | GO:0008299: isoprenoid biosynthetic process | 6.76E-03 |
| 104 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.76E-03 |
| 105 | GO:0009793: embryo development ending in seed dormancy | 7.10E-03 |
| 106 | GO:0048511: rhythmic process | 7.22E-03 |
| 107 | GO:0042147: retrograde transport, endosome to Golgi | 9.17E-03 |
| 108 | GO:0010087: phloem or xylem histogenesis | 9.68E-03 |
| 109 | GO:0080022: primary root development | 9.68E-03 |
| 110 | GO:0045489: pectin biosynthetic process | 1.02E-02 |
| 111 | GO:0009958: positive gravitropism | 1.02E-02 |
| 112 | GO:0010154: fruit development | 1.02E-02 |
| 113 | GO:0010305: leaf vascular tissue pattern formation | 1.02E-02 |
| 114 | GO:0042752: regulation of circadian rhythm | 1.07E-02 |
| 115 | GO:0008654: phospholipid biosynthetic process | 1.13E-02 |
| 116 | GO:0009851: auxin biosynthetic process | 1.13E-02 |
| 117 | GO:0006623: protein targeting to vacuole | 1.13E-02 |
| 118 | GO:0010183: pollen tube guidance | 1.13E-02 |
| 119 | GO:0048825: cotyledon development | 1.13E-02 |
| 120 | GO:0010468: regulation of gene expression | 1.15E-02 |
| 121 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.18E-02 |
| 122 | GO:0055114: oxidation-reduction process | 1.29E-02 |
| 123 | GO:0046686: response to cadmium ion | 1.32E-02 |
| 124 | GO:0000910: cytokinesis | 1.47E-02 |
| 125 | GO:0009658: chloroplast organization | 1.50E-02 |
| 126 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.72E-02 |
| 127 | GO:0009723: response to ethylene | 1.73E-02 |
| 128 | GO:0000160: phosphorelay signal transduction system | 1.92E-02 |
| 129 | GO:0006499: N-terminal protein myristoylation | 1.99E-02 |
| 130 | GO:0046777: protein autophosphorylation | 1.99E-02 |
| 131 | GO:0007568: aging | 2.05E-02 |
| 132 | GO:0009910: negative regulation of flower development | 2.05E-02 |
| 133 | GO:0048527: lateral root development | 2.05E-02 |
| 134 | GO:0010119: regulation of stomatal movement | 2.05E-02 |
| 135 | GO:0009631: cold acclimation | 2.05E-02 |
| 136 | GO:0045454: cell redox homeostasis | 2.23E-02 |
| 137 | GO:0010114: response to red light | 2.63E-02 |
| 138 | GO:0009744: response to sucrose | 2.63E-02 |
| 139 | GO:0042546: cell wall biogenesis | 2.70E-02 |
| 140 | GO:0006281: DNA repair | 2.74E-02 |
| 141 | GO:0009965: leaf morphogenesis | 2.85E-02 |
| 142 | GO:0009733: response to auxin | 3.09E-02 |
| 143 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.33E-02 |
| 144 | GO:0006857: oligopeptide transport | 3.41E-02 |
| 145 | GO:0006096: glycolytic process | 3.66E-02 |
| 146 | GO:0048367: shoot system development | 3.74E-02 |
| 147 | GO:0009409: response to cold | 3.89E-02 |
| 148 | GO:0009740: gibberellic acid mediated signaling pathway | 4.00E-02 |
| 149 | GO:0009742: brassinosteroid mediated signaling pathway | 4.35E-02 |
| 150 | GO:0009908: flower development | 4.39E-02 |
| 151 | GO:0009735: response to cytokinin | 4.44E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0036033: mediator complex binding | 0.00E+00 |
| 2 | GO:0008176: tRNA (guanine-N7-)-methyltransferase activity | 0.00E+00 |
| 3 | GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity | 0.00E+00 |
| 4 | GO:0004059: aralkylamine N-acetyltransferase activity | 0.00E+00 |
| 5 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 6 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 7 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 8 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 9 | GO:0003913: DNA photolyase activity | 2.75E-06 |
| 10 | GO:0009882: blue light photoreceptor activity | 6.48E-06 |
| 11 | GO:0003989: acetyl-CoA carboxylase activity | 2.01E-05 |
| 12 | GO:0000293: ferric-chelate reductase activity | 3.03E-05 |
| 13 | GO:0009881: photoreceptor activity | 5.77E-05 |
| 14 | GO:0004328: formamidase activity | 1.20E-04 |
| 15 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.20E-04 |
| 16 | GO:0080132: fatty acid alpha-hydroxylase activity | 1.20E-04 |
| 17 | GO:0004001: adenosine kinase activity | 1.20E-04 |
| 18 | GO:0004362: glutathione-disulfide reductase activity | 2.77E-04 |
| 19 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 2.77E-04 |
| 20 | GO:0004766: spermidine synthase activity | 2.77E-04 |
| 21 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.77E-04 |
| 22 | GO:0004312: fatty acid synthase activity | 2.77E-04 |
| 23 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.77E-04 |
| 24 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.77E-04 |
| 25 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 2.77E-04 |
| 26 | GO:0004512: inositol-3-phosphate synthase activity | 2.77E-04 |
| 27 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.77E-04 |
| 28 | GO:0048531: beta-1,3-galactosyltransferase activity | 2.77E-04 |
| 29 | GO:0070402: NADPH binding | 4.58E-04 |
| 30 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 4.58E-04 |
| 31 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 4.58E-04 |
| 32 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.58E-04 |
| 33 | GO:0004075: biotin carboxylase activity | 4.58E-04 |
| 34 | GO:0035198: miRNA binding | 6.57E-04 |
| 35 | GO:0048027: mRNA 5'-UTR binding | 6.57E-04 |
| 36 | GO:0016851: magnesium chelatase activity | 6.57E-04 |
| 37 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 6.57E-04 |
| 38 | GO:0016846: carbon-sulfur lyase activity | 1.10E-03 |
| 39 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.35E-03 |
| 40 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.35E-03 |
| 41 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.35E-03 |
| 42 | GO:0016208: AMP binding | 1.35E-03 |
| 43 | GO:0008017: microtubule binding | 1.50E-03 |
| 44 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.61E-03 |
| 45 | GO:0016832: aldehyde-lyase activity | 1.61E-03 |
| 46 | GO:0009927: histidine phosphotransfer kinase activity | 1.61E-03 |
| 47 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.61E-03 |
| 48 | GO:0008236: serine-type peptidase activity | 1.72E-03 |
| 49 | GO:0042802: identical protein binding | 1.92E-03 |
| 50 | GO:0043022: ribosome binding | 2.19E-03 |
| 51 | GO:0071949: FAD binding | 2.82E-03 |
| 52 | GO:0050660: flavin adenine dinucleotide binding | 2.96E-03 |
| 53 | GO:0003777: microtubule motor activity | 4.35E-03 |
| 54 | GO:0005315: inorganic phosphate transmembrane transporter activity | 4.64E-03 |
| 55 | GO:0015095: magnesium ion transmembrane transporter activity | 4.64E-03 |
| 56 | GO:0000155: phosphorelay sensor kinase activity | 4.64E-03 |
| 57 | GO:0003725: double-stranded RNA binding | 4.64E-03 |
| 58 | GO:0005525: GTP binding | 4.94E-03 |
| 59 | GO:0003774: motor activity | 5.04E-03 |
| 60 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 5.04E-03 |
| 61 | GO:0003924: GTPase activity | 5.29E-03 |
| 62 | GO:0008146: sulfotransferase activity | 5.46E-03 |
| 63 | GO:0016746: transferase activity, transferring acyl groups | 5.75E-03 |
| 64 | GO:0031409: pigment binding | 5.88E-03 |
| 65 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 7.22E-03 |
| 66 | GO:0004252: serine-type endopeptidase activity | 7.75E-03 |
| 67 | GO:0005515: protein binding | 7.85E-03 |
| 68 | GO:0030570: pectate lyase activity | 8.18E-03 |
| 69 | GO:0008514: organic anion transmembrane transporter activity | 8.66E-03 |
| 70 | GO:0008080: N-acetyltransferase activity | 1.02E-02 |
| 71 | GO:0001085: RNA polymerase II transcription factor binding | 1.02E-02 |
| 72 | GO:0016491: oxidoreductase activity | 1.03E-02 |
| 73 | GO:0016853: isomerase activity | 1.07E-02 |
| 74 | GO:0010181: FMN binding | 1.07E-02 |
| 75 | GO:0005524: ATP binding | 1.18E-02 |
| 76 | GO:0016791: phosphatase activity | 1.36E-02 |
| 77 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.41E-02 |
| 78 | GO:0005200: structural constituent of cytoskeleton | 1.41E-02 |
| 79 | GO:0016168: chlorophyll binding | 1.60E-02 |
| 80 | GO:0004721: phosphoprotein phosphatase activity | 1.72E-02 |
| 81 | GO:0005507: copper ion binding | 1.72E-02 |
| 82 | GO:0004497: monooxygenase activity | 1.86E-02 |
| 83 | GO:0005096: GTPase activator activity | 1.92E-02 |
| 84 | GO:0030145: manganese ion binding | 2.05E-02 |
| 85 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 2.05E-02 |
| 86 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.05E-02 |
| 87 | GO:0050897: cobalt ion binding | 2.05E-02 |
| 88 | GO:0003993: acid phosphatase activity | 2.26E-02 |
| 89 | GO:0000149: SNARE binding | 2.33E-02 |
| 90 | GO:0050661: NADP binding | 2.41E-02 |
| 91 | GO:0005506: iron ion binding | 2.62E-02 |
| 92 | GO:0004185: serine-type carboxypeptidase activity | 2.63E-02 |
| 93 | GO:0005484: SNAP receptor activity | 2.63E-02 |
| 94 | GO:0043621: protein self-association | 2.78E-02 |
| 95 | GO:0035091: phosphatidylinositol binding | 2.78E-02 |
| 96 | GO:0005198: structural molecule activity | 2.85E-02 |
| 97 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.74E-02 |
| 98 | GO:0030599: pectinesterase activity | 4.00E-02 |
| 99 | GO:0016887: ATPase activity | 4.24E-02 |
| 100 | GO:0004672: protein kinase activity | 4.29E-02 |
| 101 | GO:0046872: metal ion binding | 4.30E-02 |
| 102 | GO:0016758: transferase activity, transferring hexosyl groups | 4.80E-02 |
| 103 | GO:0019843: rRNA binding | 4.89E-02 |
| 104 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.99E-02 |