co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G11670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
2	GO:0046460: neutral lipid biosynthetic process	0.00E+00
3	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
4	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
5	GO:0010157: response to chlorate	0.00E+00
6	GO:0006399: tRNA metabolic process	0.00E+00
7	GO:0070125: mitochondrial translational elongation	0.00E+00
8	GO:0015843: methylammonium transport	0.00E+00
9	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
10	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
11	GO:0042407: cristae formation	0.00E+00
12	GO:0015882: L-ascorbic acid transport	0.00E+00
13	GO:0045037: protein import into chloroplast stroma	9.45E-06
14	GO:0006400: tRNA modification	8.59E-05
15	GO:0043266: regulation of potassium ion transport	1.54E-04
16	GO:2000021: regulation of ion homeostasis	1.54E-04
17	GO:1902458: positive regulation of stomatal opening	1.54E-04
18	GO:0010028: xanthophyll cycle	1.54E-04
19	GO:0006419: alanyl-tRNA aminoacylation	1.54E-04
20	GO:0010206: photosystem II repair	1.70E-04
21	GO:0045036: protein targeting to chloroplast	2.40E-04
22	GO:0006633: fatty acid biosynthetic process	2.92E-04
23	GO:0080005: photosystem stoichiometry adjustment	3.51E-04
24	GO:0042325: regulation of phosphorylation	3.51E-04
25	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.51E-04
26	GO:0006423: cysteinyl-tRNA aminoacylation	3.51E-04
27	GO:2001295: malonyl-CoA biosynthetic process	5.75E-04
28	GO:0019419: sulfate reduction	5.75E-04
29	GO:0009658: chloroplast organization	6.68E-04
30	GO:0015696: ammonium transport	8.23E-04
31	GO:2001141: regulation of RNA biosynthetic process	8.23E-04
32	GO:0015846: polyamine transport	1.09E-03
33	GO:0072488: ammonium transmembrane transport	1.09E-03
34	GO:0009793: embryo development ending in seed dormancy	1.21E-03
35	GO:0045038: protein import into chloroplast thylakoid membrane	1.38E-03
36	GO:0009409: response to cold	1.40E-03
37	GO:0030163: protein catabolic process	1.55E-03
38	GO:0042793: transcription from plastid promoter	1.70E-03
39	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.70E-03
40	GO:0009228: thiamine biosynthetic process	1.70E-03
41	GO:0042372: phylloquinone biosynthetic process	2.03E-03
42	GO:0006458: 'de novo' protein folding	2.03E-03
43	GO:0042026: protein refolding	2.03E-03
44	GO:0034389: lipid particle organization	2.03E-03
45	GO:0006508: proteolysis	2.24E-03
46	GO:0010444: guard mother cell differentiation	2.39E-03
47	GO:0015693: magnesium ion transport	2.39E-03
48	GO:0006402: mRNA catabolic process	2.77E-03
49	GO:0009704: de-etiolation	2.77E-03
50	GO:2000070: regulation of response to water deprivation	2.77E-03
51	GO:0006353: DNA-templated transcription, termination	2.77E-03
52	GO:0032544: plastid translation	3.16E-03
53	GO:0006002: fructose 6-phosphate metabolic process	3.16E-03
54	GO:0071482: cellular response to light stimulus	3.16E-03
55	GO:0098656: anion transmembrane transport	3.58E-03
56	GO:0019432: triglyceride biosynthetic process	3.58E-03
57	GO:0043067: regulation of programmed cell death	4.01E-03
58	GO:0031425: chloroplast RNA processing	4.01E-03
59	GO:0000103: sulfate assimilation	4.46E-03
60	GO:0006949: syncytium formation	4.46E-03
61	GO:1903507: negative regulation of nucleic acid-templated transcription	4.92E-03
62	GO:0006352: DNA-templated transcription, initiation	4.92E-03
63	GO:0018119: peptidyl-cysteine S-nitrosylation	4.92E-03
64	GO:0016485: protein processing	4.92E-03
65	GO:0009684: indoleacetic acid biosynthetic process	4.92E-03
66	GO:0010015: root morphogenesis	4.92E-03
67	GO:0006108: malate metabolic process	5.91E-03
68	GO:0050826: response to freezing	5.91E-03
69	GO:2000012: regulation of auxin polar transport	5.91E-03
70	GO:0006096: glycolytic process	6.57E-03
71	GO:0006071: glycerol metabolic process	7.49E-03
72	GO:0019344: cysteine biosynthetic process	8.05E-03
73	GO:0061077: chaperone-mediated protein folding	9.22E-03
74	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.82E-03
75	GO:0007005: mitochondrion organization	9.82E-03
76	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.04E-02
77	GO:0009306: protein secretion	1.11E-02
78	GO:0009790: embryo development	1.16E-02
79	GO:0010197: polar nucleus fusion	1.31E-02
80	GO:0000302: response to reactive oxygen species	1.52E-02
81	GO:0007166: cell surface receptor signaling pathway	1.57E-02
82	GO:0016032: viral process	1.59E-02
83	GO:0010468: regulation of gene expression	1.64E-02
84	GO:1901657: glycosyl compound metabolic process	1.66E-02
85	GO:0009828: plant-type cell wall loosening	1.74E-02
86	GO:0006974: cellular response to DNA damage stimulus	2.13E-02
87	GO:0010411: xyloglucan metabolic process	2.21E-02
88	GO:0015995: chlorophyll biosynthetic process	2.21E-02
89	GO:0046686: response to cadmium ion	2.24E-02
90	GO:0018298: protein-chromophore linkage	2.38E-02
91	GO:0006499: N-terminal protein myristoylation	2.55E-02
92	GO:0080167: response to karrikin	2.64E-02
93	GO:0045087: innate immune response	2.81E-02
94	GO:0009637: response to blue light	2.81E-02
95	GO:0046777: protein autophosphorylation	2.82E-02
96	GO:0006099: tricarboxylic acid cycle	2.90E-02
97	GO:0006631: fatty acid metabolic process	3.18E-02
98	GO:0010114: response to red light	3.37E-02
99	GO:0042546: cell wall biogenesis	3.47E-02
100	GO:0031347: regulation of defense response	3.86E-02
101	GO:0006812: cation transport	3.96E-02
102	GO:0009664: plant-type cell wall organization	3.96E-02
103	GO:0042538: hyperosmotic salinity response	3.96E-02
104	GO:0048367: shoot system development	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
2	GO:0019808: polyamine binding	0.00E+00
3	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:0004056: argininosuccinate lyase activity	0.00E+00
6	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
7	GO:0016851: magnesium chelatase activity	1.01E-05
8	GO:0050139: nicotinate-N-glucosyltransferase activity	1.54E-04
9	GO:0005227: calcium activated cation channel activity	1.54E-04
10	GO:0004813: alanine-tRNA ligase activity	1.54E-04
11	GO:0009973: adenylyl-sulfate reductase activity	3.51E-04
12	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	3.51E-04
13	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.51E-04
14	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	3.51E-04
15	GO:0004817: cysteine-tRNA ligase activity	3.51E-04
16	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	5.75E-04
17	GO:0046524: sucrose-phosphate synthase activity	5.75E-04
18	GO:0070330: aromatase activity	5.75E-04
19	GO:0003913: DNA photolyase activity	5.75E-04
20	GO:0004176: ATP-dependent peptidase activity	6.92E-04
21	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	8.23E-04
22	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.09E-03
23	GO:0001053: plastid sigma factor activity	1.09E-03
24	GO:0016987: sigma factor activity	1.09E-03
25	GO:0018685: alkane 1-monooxygenase activity	1.38E-03
26	GO:0003989: acetyl-CoA carboxylase activity	1.38E-03
27	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.38E-03
28	GO:0004040: amidase activity	1.38E-03
29	GO:0004252: serine-type endopeptidase activity	1.67E-03
30	GO:0016208: AMP binding	1.70E-03
31	GO:0008519: ammonium transmembrane transporter activity	1.70E-03
32	GO:0008237: metallopeptidase activity	1.74E-03
33	GO:0016597: amino acid binding	1.85E-03
34	GO:0004144: diacylglycerol O-acyltransferase activity	2.03E-03
35	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.03E-03
36	GO:0016832: aldehyde-lyase activity	2.03E-03
37	GO:0030060: L-malate dehydrogenase activity	2.03E-03
38	GO:0005525: GTP binding	2.11E-03
39	GO:0009881: photoreceptor activity	2.39E-03
40	GO:0003872: 6-phosphofructokinase activity	2.39E-03
41	GO:0008236: serine-type peptidase activity	2.42E-03
42	GO:0043022: ribosome binding	2.77E-03
43	GO:0004222: metalloendopeptidase activity	2.80E-03
44	GO:0003746: translation elongation factor activity	3.21E-03
45	GO:0004713: protein tyrosine kinase activity	4.46E-03
46	GO:0008559: xenobiotic-transporting ATPase activity	4.92E-03
47	GO:0044183: protein binding involved in protein folding	4.92E-03
48	GO:0005524: ATP binding	5.33E-03
49	GO:0000049: tRNA binding	5.41E-03
50	GO:0005315: inorganic phosphate transmembrane transporter activity	5.91E-03
51	GO:0015095: magnesium ion transmembrane transporter activity	5.91E-03
52	GO:0019888: protein phosphatase regulator activity	5.91E-03
53	GO:0009982: pseudouridine synthase activity	5.91E-03
54	GO:0008266: poly(U) RNA binding	6.42E-03
55	GO:0042803: protein homodimerization activity	6.71E-03
56	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.49E-03
57	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.49E-03
58	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.49E-03
59	GO:0051082: unfolded protein binding	7.91E-03
60	GO:0003714: transcription corepressor activity	8.05E-03
61	GO:0019706: protein-cysteine S-palmitoyltransferase activity	9.22E-03
62	GO:0008514: organic anion transmembrane transporter activity	1.11E-02
63	GO:0008565: protein transporter activity	1.19E-02
64	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.28E-02
65	GO:0008536: Ran GTPase binding	1.31E-02
66	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.52E-02
67	GO:0003723: RNA binding	1.66E-02
68	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.66E-02
69	GO:0003729: mRNA binding	2.09E-02
70	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.21E-02
71	GO:0102483: scopolin beta-glucosidase activity	2.21E-02
72	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.38E-02
73	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.64E-02
74	GO:0008422: beta-glucosidase activity	2.99E-02
75	GO:0051539: 4 iron, 4 sulfur cluster binding	3.09E-02
76	GO:0003924: GTPase activity	3.89E-02
77	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.17E-02