co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G11600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0001881: receptor recycling	0.00E+00
3	GO:0006903: vesicle targeting	0.00E+00
4	GO:0006511: ubiquitin-dependent protein catabolic process	3.06E-15
5	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.35E-06
6	GO:0051788: response to misfolded protein	3.24E-06
7	GO:0030163: protein catabolic process	2.53E-05
8	GO:0043248: proteasome assembly	1.10E-04
9	GO:0030433: ubiquitin-dependent ERAD pathway	1.29E-04
10	GO:0006680: glucosylceramide catabolic process	2.65E-04
11	GO:0006474: N-terminal protein amino acid acetylation	2.65E-04
12	GO:0035266: meristem growth	2.65E-04
13	GO:0007292: female gamete generation	2.65E-04
14	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.65E-04
15	GO:0097502: mannosylation	2.65E-04
16	GO:0006623: protein targeting to vacuole	2.80E-04
17	GO:0018345: protein palmitoylation	5.83E-04
18	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	5.83E-04
19	GO:0051252: regulation of RNA metabolic process	5.83E-04
20	GO:0043132: NAD transport	5.83E-04
21	GO:0080183: response to photooxidative stress	5.83E-04
22	GO:2000072: regulation of defense response to fungus, incompatible interaction	5.83E-04
23	GO:0006672: ceramide metabolic process	5.83E-04
24	GO:0006212: uracil catabolic process	5.83E-04
25	GO:0019483: beta-alanine biosynthetic process	5.83E-04
26	GO:0015865: purine nucleotide transport	5.83E-04
27	GO:0051258: protein polymerization	5.83E-04
28	GO:0010015: root morphogenesis	5.99E-04
29	GO:0010102: lateral root morphogenesis	7.76E-04
30	GO:0009407: toxin catabolic process	7.90E-04
31	GO:0010540: basipetal auxin transport	8.73E-04
32	GO:0044375: regulation of peroxisome size	9.47E-04
33	GO:0018342: protein prenylation	9.47E-04
34	GO:0060968: regulation of gene silencing	9.47E-04
35	GO:0008333: endosome to lysosome transport	9.47E-04
36	GO:0055074: calcium ion homeostasis	9.47E-04
37	GO:0006874: cellular calcium ion homeostasis	1.32E-03
38	GO:0007166: cell surface receptor signaling pathway	1.35E-03
39	GO:0009311: oligosaccharide metabolic process	1.35E-03
40	GO:0046902: regulation of mitochondrial membrane permeability	1.35E-03
41	GO:0009647: skotomorphogenesis	1.35E-03
42	GO:0006612: protein targeting to membrane	1.35E-03
43	GO:0006893: Golgi to plasma membrane transport	1.35E-03
44	GO:0015858: nucleoside transport	1.35E-03
45	GO:0009963: positive regulation of flavonoid biosynthetic process	1.35E-03
46	GO:0048577: negative regulation of short-day photoperiodism, flowering	1.35E-03
47	GO:0010227: floral organ abscission	1.72E-03
48	GO:1903830: magnesium ion transmembrane transport	1.81E-03
49	GO:0006536: glutamate metabolic process	1.81E-03
50	GO:0051603: proteolysis involved in cellular protein catabolic process	1.96E-03
51	GO:0016117: carotenoid biosynthetic process	2.03E-03
52	GO:0042147: retrograde transport, endosome to Golgi	2.03E-03
53	GO:0046283: anthocyanin-containing compound metabolic process	2.31E-03
54	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.31E-03
55	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.31E-03
56	GO:0009823: cytokinin catabolic process	2.31E-03
57	GO:0046686: response to cadmium ion	2.82E-03
58	GO:0048827: phyllome development	2.85E-03
59	GO:0048232: male gamete generation	2.85E-03
60	GO:0042176: regulation of protein catabolic process	2.85E-03
61	GO:0045040: protein import into mitochondrial outer membrane	2.85E-03
62	GO:0003006: developmental process involved in reproduction	2.85E-03
63	GO:0006891: intra-Golgi vesicle-mediated transport	2.90E-03
64	GO:0048280: vesicle fusion with Golgi apparatus	3.43E-03
65	GO:0009554: megasporogenesis	3.43E-03
66	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.43E-03
67	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.43E-03
68	GO:0045454: cell redox homeostasis	3.92E-03
69	GO:0016579: protein deubiquitination	3.96E-03
70	GO:0015693: magnesium ion transport	4.04E-03
71	GO:0080027: response to herbivore	4.04E-03
72	GO:0048528: post-embryonic root development	4.04E-03
73	GO:0015937: coenzyme A biosynthetic process	4.04E-03
74	GO:0010078: maintenance of root meristem identity	4.69E-03
75	GO:0031540: regulation of anthocyanin biosynthetic process	4.69E-03
76	GO:0006888: ER to Golgi vesicle-mediated transport	4.93E-03
77	GO:0055085: transmembrane transport	5.25E-03
78	GO:0010204: defense response signaling pathway, resistance gene-independent	5.37E-03
79	GO:0043562: cellular response to nitrogen levels	5.37E-03
80	GO:0060321: acceptance of pollen	5.37E-03
81	GO:0007186: G-protein coupled receptor signaling pathway	5.37E-03
82	GO:0009657: plastid organization	5.37E-03
83	GO:0048574: long-day photoperiodism, flowering	5.37E-03
84	GO:0048767: root hair elongation	5.74E-03
85	GO:0006499: N-terminal protein myristoylation	6.03E-03
86	GO:0046685: response to arsenic-containing substance	6.09E-03
87	GO:0043067: regulation of programmed cell death	6.83E-03
88	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.83E-03
89	GO:0045087: innate immune response	6.93E-03
90	GO:0006468: protein phosphorylation	7.17E-03
91	GO:0048829: root cap development	7.61E-03
92	GO:0006896: Golgi to vacuole transport	7.61E-03
93	GO:0006839: mitochondrial transport	7.90E-03
94	GO:0006887: exocytosis	8.24E-03
95	GO:0006913: nucleocytoplasmic transport	8.42E-03
96	GO:0072593: reactive oxygen species metabolic process	8.42E-03
97	GO:0043085: positive regulation of catalytic activity	8.42E-03
98	GO:0006790: sulfur compound metabolic process	9.26E-03
99	GO:0055046: microgametogenesis	1.01E-02
100	GO:0009636: response to toxic substance	1.01E-02
101	GO:0010223: secondary shoot formation	1.10E-02
102	GO:0009266: response to temperature stimulus	1.10E-02
103	GO:0009934: regulation of meristem structural organization	1.10E-02
104	GO:0048768: root hair cell tip growth	1.10E-02
105	GO:0002237: response to molecule of bacterial origin	1.10E-02
106	GO:0009933: meristem structural organization	1.10E-02
107	GO:0007034: vacuolar transport	1.10E-02
108	GO:0010039: response to iron ion	1.20E-02
109	GO:0090351: seedling development	1.20E-02
110	GO:0046854: phosphatidylinositol phosphorylation	1.20E-02
111	GO:0006813: potassium ion transport	1.21E-02
112	GO:0000162: tryptophan biosynthetic process	1.29E-02
113	GO:0010187: negative regulation of seed germination	1.39E-02
114	GO:0080147: root hair cell development	1.39E-02
115	GO:0071456: cellular response to hypoxia	1.70E-02
116	GO:0009624: response to nematode	1.72E-02
117	GO:0009625: response to insect	1.81E-02
118	GO:0006012: galactose metabolic process	1.81E-02
119	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.03E-02
120	GO:0008284: positive regulation of cell proliferation	2.03E-02
121	GO:0016042: lipid catabolic process	2.13E-02
122	GO:0010118: stomatal movement	2.15E-02
123	GO:0006606: protein import into nucleus	2.15E-02
124	GO:0009408: response to heat	2.21E-02
125	GO:0006662: glycerol ether metabolic process	2.26E-02
126	GO:0006885: regulation of pH	2.26E-02
127	GO:0048544: recognition of pollen	2.38E-02
128	GO:0055072: iron ion homeostasis	2.51E-02
129	GO:0048825: cotyledon development	2.51E-02
130	GO:0009630: gravitropism	2.76E-02
131	GO:0019761: glucosinolate biosynthetic process	2.76E-02
132	GO:0006914: autophagy	3.02E-02
133	GO:0006904: vesicle docking involved in exocytosis	3.15E-02
134	GO:0071805: potassium ion transmembrane transport	3.15E-02
135	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.33E-02
136	GO:0009734: auxin-activated signaling pathway	3.38E-02
137	GO:0009615: response to virus	3.42E-02
138	GO:0042742: defense response to bacterium	3.66E-02
139	GO:0009627: systemic acquired resistance	3.70E-02
140	GO:0006906: vesicle fusion	3.70E-02
141	GO:0055114: oxidation-reduction process	3.73E-02
142	GO:0006950: response to stress	3.84E-02
143	GO:0009735: response to cytokinin	4.03E-02
144	GO:0008219: cell death	4.13E-02
145	GO:0009817: defense response to fungus, incompatible interaction	4.13E-02
146	GO:0010311: lateral root formation	4.28E-02
147	GO:0006811: ion transport	4.43E-02
148	GO:0009416: response to light stimulus	4.49E-02
149	GO:0010043: response to zinc ion	4.58E-02
150	GO:0009910: negative regulation of flower development	4.58E-02
151	GO:0048527: lateral root development	4.58E-02
152	GO:0035556: intracellular signal transduction	4.80E-02
153	GO:0009867: jasmonic acid mediated signaling pathway	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0044610: FMN transmembrane transporter activity	0.00E+00
2	GO:0004157: dihydropyrimidinase activity	0.00E+00
3	GO:0004573: mannosyl-oligosaccharide glucosidase activity	0.00E+00
4	GO:0001729: ceramide kinase activity	0.00E+00
5	GO:0016504: peptidase activator activity	0.00E+00
6	GO:0052925: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity	0.00E+00
7	GO:0000033: alpha-1,3-mannosyltransferase activity	0.00E+00
8	GO:0070577: lysine-acetylated histone binding	0.00E+00
9	GO:0008418: protein-N-terminal asparagine amidohydrolase activity	0.00E+00
10	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
11	GO:0004298: threonine-type endopeptidase activity	8.69E-08
12	GO:0036402: proteasome-activating ATPase activity	1.35E-06
13	GO:0008233: peptidase activity	1.34E-05
14	GO:0017025: TBP-class protein binding	6.03E-05
15	GO:0004633: phosphopantothenoylcysteine decarboxylase activity	2.65E-04
16	GO:0015230: FAD transmembrane transporter activity	2.65E-04
17	GO:2001147: camalexin binding	2.65E-04
18	GO:2001227: quercitrin binding	2.65E-04
19	GO:0004558: alpha-1,4-glucosidase activity	2.65E-04
20	GO:0048037: cofactor binding	2.65E-04
21	GO:0000386: second spliceosomal transesterification activity	2.65E-04
22	GO:0052917: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity	2.65E-04
23	GO:0004348: glucosylceramidase activity	2.65E-04
24	GO:0051980: iron-nicotianamine transmembrane transporter activity	5.83E-04
25	GO:0008517: folic acid transporter activity	5.83E-04
26	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	5.83E-04
27	GO:0004776: succinate-CoA ligase (GDP-forming) activity	5.83E-04
28	GO:0004596: peptide alpha-N-acetyltransferase activity	5.83E-04
29	GO:0004566: beta-glucuronidase activity	5.83E-04
30	GO:0015228: coenzyme A transmembrane transporter activity	5.83E-04
31	GO:0051724: NAD transporter activity	5.83E-04
32	GO:0004775: succinate-CoA ligase (ADP-forming) activity	5.83E-04
33	GO:0008428: ribonuclease inhibitor activity	5.83E-04
34	GO:1990585: hydroxyproline O-arabinosyltransferase activity	5.83E-04
35	GO:0008559: xenobiotic-transporting ATPase activity	5.99E-04
36	GO:0030247: polysaccharide binding	6.13E-04
37	GO:0052692: raffinose alpha-galactosidase activity	9.47E-04
38	GO:0004324: ferredoxin-NADP+ reductase activity	9.47E-04
39	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	9.47E-04
40	GO:0004557: alpha-galactosidase activity	9.47E-04
41	GO:0005217: intracellular ligand-gated ion channel activity	9.75E-04
42	GO:0004970: ionotropic glutamate receptor activity	9.75E-04
43	GO:0004364: glutathione transferase activity	1.22E-03
44	GO:0004351: glutamate decarboxylase activity	1.35E-03
45	GO:0016004: phospholipase activator activity	1.81E-03
46	GO:0009916: alternative oxidase activity	1.81E-03
47	GO:0004834: tryptophan synthase activity	1.81E-03
48	GO:0070628: proteasome binding	1.81E-03
49	GO:0005471: ATP:ADP antiporter activity	2.31E-03
50	GO:0019139: cytokinin dehydrogenase activity	2.31E-03
51	GO:0008948: oxaloacetate decarboxylase activity	2.31E-03
52	GO:0080122: AMP transmembrane transporter activity	2.31E-03
53	GO:0047714: galactolipase activity	2.85E-03
54	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.90E-03
55	GO:0015035: protein disulfide oxidoreductase activity	3.04E-03
56	GO:0005347: ATP transmembrane transporter activity	3.43E-03
57	GO:0015217: ADP transmembrane transporter activity	3.43E-03
58	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.43E-03
59	GO:0043295: glutathione binding	4.04E-03
60	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.69E-03
61	GO:0004034: aldose 1-epimerase activity	4.69E-03
62	GO:0003951: NAD+ kinase activity	5.37E-03
63	GO:0004630: phospholipase D activity	5.37E-03
64	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	5.37E-03
65	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	5.37E-03
66	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.38E-03
67	GO:0000149: SNARE binding	7.57E-03
68	GO:0030234: enzyme regulator activity	7.61E-03
69	GO:0008047: enzyme activator activity	7.61E-03
70	GO:0008327: methyl-CpG binding	8.42E-03
71	GO:0008794: arsenate reductase (glutaredoxin) activity	8.42E-03
72	GO:0005484: SNAP receptor activity	8.94E-03
73	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.26E-03
74	GO:0015198: oligopeptide transporter activity	9.26E-03
75	GO:0004022: alcohol dehydrogenase (NAD) activity	1.01E-02
76	GO:0015095: magnesium ion transmembrane transporter activity	1.01E-02
77	GO:0005198: structural molecule activity	1.01E-02
78	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.01E-02
79	GO:0016887: ATPase activity	1.05E-02
80	GO:0008131: primary amine oxidase activity	1.10E-02
81	GO:0004867: serine-type endopeptidase inhibitor activity	1.20E-02
82	GO:0008061: chitin binding	1.20E-02
83	GO:0043130: ubiquitin binding	1.39E-02
84	GO:0015079: potassium ion transmembrane transporter activity	1.49E-02
85	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.59E-02
86	GO:0004540: ribonuclease activity	1.59E-02
87	GO:0008810: cellulase activity	1.81E-02
88	GO:0003727: single-stranded RNA binding	1.92E-02
89	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.92E-02
90	GO:0047134: protein-disulfide reductase activity	2.03E-02
91	GO:0005451: monovalent cation:proton antiporter activity	2.15E-02
92	GO:0046873: metal ion transmembrane transporter activity	2.26E-02
93	GO:0008536: Ran GTPase binding	2.26E-02
94	GO:0008080: N-acetyltransferase activity	2.26E-02
95	GO:0004791: thioredoxin-disulfide reductase activity	2.38E-02
96	GO:0016853: isomerase activity	2.38E-02
97	GO:0015299: solute:proton antiporter activity	2.38E-02
98	GO:0010181: FMN binding	2.38E-02
99	GO:0030170: pyridoxal phosphate binding	2.40E-02
100	GO:0009055: electron carrier activity	2.41E-02
101	GO:0004872: receptor activity	2.51E-02
102	GO:0016301: kinase activity	2.63E-02
103	GO:0048038: quinone binding	2.63E-02
104	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.63E-02
105	GO:0015385: sodium:proton antiporter activity	2.88E-02
106	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.88E-02
107	GO:0008237: metallopeptidase activity	3.15E-02
108	GO:0005524: ATP binding	3.22E-02
109	GO:0005509: calcium ion binding	3.26E-02
110	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.70E-02
111	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.78E-02
112	GO:0004683: calmodulin-dependent protein kinase activity	3.84E-02
113	GO:0004806: triglyceride lipase activity	3.84E-02
114	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.58E-02
115	GO:0004601: peroxidase activity	4.60E-02