co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G11110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0097275: cellular ammonia homeostasis	0.00E+00
2	GO:0042966: biotin carboxyl carrier protein biosynthetic process	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0051924: regulation of calcium ion transport	0.00E+00
6	GO:2001294: malonyl-CoA catabolic process	0.00E+00
7	GO:0010068: protoderm histogenesis	0.00E+00
8	GO:0010450: inflorescence meristem growth	2.02E-04
9	GO:0051171: regulation of nitrogen compound metabolic process	2.02E-04
10	GO:0071028: nuclear mRNA surveillance	2.02E-04
11	GO:0006659: phosphatidylserine biosynthetic process	2.02E-04
12	GO:0043087: regulation of GTPase activity	2.02E-04
13	GO:0006264: mitochondrial DNA replication	2.02E-04
14	GO:0033259: plastid DNA replication	2.02E-04
15	GO:0015804: neutral amino acid transport	4.52E-04
16	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	4.52E-04
17	GO:0034475: U4 snRNA 3'-end processing	4.52E-04
18	GO:1900871: chloroplast mRNA modification	4.52E-04
19	GO:0007154: cell communication	4.52E-04
20	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.52E-04
21	GO:1900033: negative regulation of trichome patterning	4.52E-04
22	GO:0031125: rRNA 3'-end processing	4.52E-04
23	GO:0016075: rRNA catabolic process	7.36E-04
24	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	7.36E-04
25	GO:0051127: positive regulation of actin nucleation	7.36E-04
26	GO:0006753: nucleoside phosphate metabolic process	7.36E-04
27	GO:0045165: cell fate commitment	7.36E-04
28	GO:0006166: purine ribonucleoside salvage	1.05E-03
29	GO:0006164: purine nucleotide biosynthetic process	1.05E-03
30	GO:0009963: positive regulation of flavonoid biosynthetic process	1.05E-03
31	GO:0009647: skotomorphogenesis	1.05E-03
32	GO:0048645: animal organ formation	1.05E-03
33	GO:0010255: glucose mediated signaling pathway	1.05E-03
34	GO:0006168: adenine salvage	1.05E-03
35	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.05E-03
36	GO:0009585: red, far-red light phototransduction	1.15E-03
37	GO:0009649: entrainment of circadian clock	1.40E-03
38	GO:0006021: inositol biosynthetic process	1.40E-03
39	GO:0048629: trichome patterning	1.40E-03
40	GO:0048367: shoot system development	1.47E-03
41	GO:1902183: regulation of shoot apical meristem development	1.78E-03
42	GO:0044209: AMP salvage	1.78E-03
43	GO:0010158: abaxial cell fate specification	1.78E-03
44	GO:0046283: anthocyanin-containing compound metabolic process	1.78E-03
45	GO:0045038: protein import into chloroplast thylakoid membrane	1.78E-03
46	GO:0010583: response to cyclopentenone	2.11E-03
47	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.19E-03
48	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.19E-03
49	GO:0000741: karyogamy	2.19E-03
50	GO:0006464: cellular protein modification process	2.39E-03
51	GO:0042372: phylloquinone biosynthetic process	2.63E-03
52	GO:0048280: vesicle fusion with Golgi apparatus	2.63E-03
53	GO:0030488: tRNA methylation	2.63E-03
54	GO:0010196: nonphotochemical quenching	3.09E-03
55	GO:0015937: coenzyme A biosynthetic process	3.09E-03
56	GO:0048573: photoperiodism, flowering	3.35E-03
57	GO:0007155: cell adhesion	3.59E-03
58	GO:0009690: cytokinin metabolic process	3.59E-03
59	GO:0010078: maintenance of root meristem identity	3.59E-03
60	GO:0006997: nucleus organization	4.10E-03
61	GO:0043562: cellular response to nitrogen levels	4.10E-03
62	GO:0010093: specification of floral organ identity	4.10E-03
63	GO:0006865: amino acid transport	4.48E-03
64	GO:2000024: regulation of leaf development	4.65E-03
65	GO:0006189: 'de novo' IMP biosynthetic process	4.65E-03
66	GO:0009638: phototropism	5.21E-03
67	GO:0010018: far-red light signaling pathway	5.21E-03
68	GO:1900865: chloroplast RNA modification	5.21E-03
69	GO:0010380: regulation of chlorophyll biosynthetic process	5.21E-03
70	GO:0006896: Golgi to vacuole transport	5.80E-03
71	GO:0009299: mRNA transcription	5.80E-03
72	GO:0006535: cysteine biosynthetic process from serine	5.80E-03
73	GO:0045036: protein targeting to chloroplast	5.80E-03
74	GO:0009641: shade avoidance	5.80E-03
75	GO:0009684: indoleacetic acid biosynthetic process	6.41E-03
76	GO:0009773: photosynthetic electron transport in photosystem I	6.41E-03
77	GO:0010152: pollen maturation	7.04E-03
78	GO:0009725: response to hormone	7.70E-03
79	GO:0010588: cotyledon vascular tissue pattern formation	7.70E-03
80	GO:0010628: positive regulation of gene expression	7.70E-03
81	GO:0030036: actin cytoskeleton organization	7.70E-03
82	GO:0048467: gynoecium development	8.37E-03
83	GO:0009933: meristem structural organization	8.37E-03
84	GO:0090351: seedling development	9.07E-03
85	GO:0010030: positive regulation of seed germination	9.07E-03
86	GO:0042753: positive regulation of circadian rhythm	9.79E-03
87	GO:0009833: plant-type primary cell wall biogenesis	9.79E-03
88	GO:0019344: cysteine biosynthetic process	1.05E-02
89	GO:0000027: ribosomal large subunit assembly	1.05E-02
90	GO:0007010: cytoskeleton organization	1.05E-02
91	GO:0010187: negative regulation of seed germination	1.05E-02
92	GO:0009944: polarity specification of adaxial/abaxial axis	1.05E-02
93	GO:0080147: root hair cell development	1.05E-02
94	GO:0009740: gibberellic acid mediated signaling pathway	1.09E-02
95	GO:0003333: amino acid transmembrane transport	1.21E-02
96	GO:0035428: hexose transmembrane transport	1.29E-02
97	GO:0080092: regulation of pollen tube growth	1.29E-02
98	GO:0010214: seed coat development	1.45E-02
99	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.54E-02
100	GO:0042147: retrograde transport, endosome to Golgi	1.54E-02
101	GO:0042631: cellular response to water deprivation	1.62E-02
102	GO:0042335: cuticle development	1.62E-02
103	GO:0000271: polysaccharide biosynthetic process	1.62E-02
104	GO:0080022: primary root development	1.62E-02
105	GO:0010087: phloem or xylem histogenesis	1.62E-02
106	GO:0045489: pectin biosynthetic process	1.71E-02
107	GO:0010154: fruit development	1.71E-02
108	GO:0009958: positive gravitropism	1.71E-02
109	GO:0010197: polar nucleus fusion	1.71E-02
110	GO:0046323: glucose import	1.71E-02
111	GO:0006623: protein targeting to vacuole	1.89E-02
112	GO:0009791: post-embryonic development	1.89E-02
113	GO:0048825: cotyledon development	1.89E-02
114	GO:0008654: phospholipid biosynthetic process	1.89E-02
115	GO:0009851: auxin biosynthetic process	1.89E-02
116	GO:0040008: regulation of growth	1.92E-02
117	GO:0080156: mitochondrial mRNA modification	1.99E-02
118	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.99E-02
119	GO:0006891: intra-Golgi vesicle-mediated transport	1.99E-02
120	GO:0007623: circadian rhythm	2.01E-02
121	GO:1901657: glycosyl compound metabolic process	2.18E-02
122	GO:0009639: response to red or far red light	2.28E-02
123	GO:0009733: response to auxin	2.44E-02
124	GO:0016126: sterol biosynthetic process	2.58E-02
125	GO:0009416: response to light stimulus	2.77E-02
126	GO:0006888: ER to Golgi vesicle-mediated transport	2.90E-02
127	GO:0030244: cellulose biosynthetic process	3.12E-02
128	GO:0000160: phosphorelay signal transduction system	3.23E-02
129	GO:0009832: plant-type cell wall biogenesis	3.23E-02
130	GO:0006499: N-terminal protein myristoylation	3.35E-02
131	GO:0009910: negative regulation of flower development	3.46E-02
132	GO:0048527: lateral root development	3.46E-02
133	GO:0010119: regulation of stomatal movement	3.46E-02
134	GO:0006468: protein phosphorylation	3.60E-02
135	GO:0009723: response to ethylene	3.60E-02
136	GO:0009853: photorespiration	3.69E-02
137	GO:0016051: carbohydrate biosynthetic process	3.69E-02
138	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.99E-02
139	GO:0046777: protein autophosphorylation	4.12E-02
140	GO:0006631: fatty acid metabolic process	4.18E-02
141	GO:0051707: response to other organism	4.42E-02
142	GO:0009640: photomorphogenesis	4.42E-02
143	GO:0045454: cell redox homeostasis	4.61E-02
144	GO:0009644: response to high light intensity	4.68E-02
145	GO:0045892: negative regulation of transcription, DNA-templated	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0004078: biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity	0.00E+00
2	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
3	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
4	GO:0004077: biotin-[acetyl-CoA-carboxylase] ligase activity	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:1990534: thermospermine oxidase activity	0.00E+00
7	GO:0050139: nicotinate-N-glucosyltransferase activity	2.02E-04
8	GO:0010945: CoA pyrophosphatase activity	2.02E-04
9	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	2.02E-04
10	GO:0043425: bHLH transcription factor binding	4.52E-04
11	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	4.52E-04
12	GO:0004512: inositol-3-phosphate synthase activity	4.52E-04
13	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	4.52E-04
14	GO:0015172: acidic amino acid transmembrane transporter activity	4.52E-04
15	GO:0050017: L-3-cyanoalanine synthase activity	4.52E-04
16	GO:0017118: lipoyltransferase activity	4.52E-04
17	GO:0003913: DNA photolyase activity	7.36E-04
18	GO:0004148: dihydrolipoyl dehydrogenase activity	7.36E-04
19	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	7.36E-04
20	GO:0000254: C-4 methylsterol oxidase activity	1.05E-03
21	GO:0015175: neutral amino acid transmembrane transporter activity	1.05E-03
22	GO:0003999: adenine phosphoribosyltransferase activity	1.05E-03
23	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	1.05E-03
24	GO:0008409: 5'-3' exonuclease activity	1.40E-03
25	GO:0080032: methyl jasmonate esterase activity	1.40E-03
26	GO:0016846: carbon-sulfur lyase activity	1.78E-03
27	GO:0000210: NAD+ diphosphatase activity	2.19E-03
28	GO:0016208: AMP binding	2.19E-03
29	GO:0004124: cysteine synthase activity	2.63E-03
30	GO:0008794: arsenate reductase (glutaredoxin) activity	6.41E-03
31	GO:0035091: phosphatidylinositol binding	6.53E-03
32	GO:0000175: 3'-5'-exoribonuclease activity	7.70E-03
33	GO:0008131: primary amine oxidase activity	8.37E-03
34	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.37E-03
35	GO:0015171: amino acid transmembrane transporter activity	9.02E-03
36	GO:0003887: DNA-directed DNA polymerase activity	9.79E-03
37	GO:0004672: protein kinase activity	1.16E-02
38	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.21E-02
39	GO:0008408: 3'-5' exonuclease activity	1.21E-02
40	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.29E-02
41	GO:0030570: pectate lyase activity	1.37E-02
42	GO:0016760: cellulose synthase (UDP-forming) activity	1.37E-02
43	GO:0004674: protein serine/threonine kinase activity	1.43E-02
44	GO:0003727: single-stranded RNA binding	1.45E-02
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.50E-02
46	GO:0001085: RNA polymerase II transcription factor binding	1.71E-02
47	GO:0005355: glucose transmembrane transporter activity	1.80E-02
48	GO:0016757: transferase activity, transferring glycosyl groups	1.81E-02
49	GO:0005506: iron ion binding	2.01E-02
50	GO:0044212: transcription regulatory region DNA binding	2.05E-02
51	GO:0008017: microtubule binding	2.11E-02
52	GO:0000156: phosphorelay response regulator activity	2.18E-02
53	GO:0016759: cellulose synthase activity	2.28E-02
54	GO:0003824: catalytic activity	2.36E-02
55	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.38E-02
56	GO:0042802: identical protein binding	2.56E-02
57	GO:0102483: scopolin beta-glucosidase activity	2.90E-02
58	GO:0030247: polysaccharide binding	2.90E-02
59	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.01E-02
60	GO:0016788: hydrolase activity, acting on ester bonds	3.18E-02
61	GO:0005096: GTPase activator activity	3.23E-02
62	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.46E-02
63	GO:0050897: cobalt ion binding	3.46E-02
64	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.81E-02
65	GO:0004497: monooxygenase activity	3.86E-02
66	GO:0008422: beta-glucosidase activity	3.93E-02
67	GO:0000149: SNARE binding	3.93E-02
68	GO:0020037: heme binding	4.00E-02
69	GO:0005524: ATP binding	4.00E-02
70	GO:0016301: kinase activity	4.03E-02
71	GO:0019825: oxygen binding	4.28E-02
72	GO:0005484: SNAP receptor activity	4.42E-02
73	GO:0051537: 2 iron, 2 sulfur cluster binding	4.68E-02
74	GO:0015293: symporter activity	4.80E-02
75	GO:0004871: signal transducer activity	4.82E-02