Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G09860

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
2GO:0071474: cellular hyperosmotic response0.00E+00
3GO:0034337: RNA folding0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:0090470: shoot organ boundary specification0.00E+00
7GO:0090279: regulation of calcium ion import0.00E+00
8GO:0015979: photosynthesis4.26E-14
9GO:0015995: chlorophyll biosynthetic process7.67E-13
10GO:0010207: photosystem II assembly2.31E-09
11GO:0009773: photosynthetic electron transport in photosystem I4.39E-08
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.12E-07
13GO:0009658: chloroplast organization8.96E-07
14GO:0048564: photosystem I assembly2.04E-05
15GO:0071482: cellular response to light stimulus2.90E-05
16GO:0006783: heme biosynthetic process3.95E-05
17GO:0009735: response to cytokinin5.98E-05
18GO:2001141: regulation of RNA biosynthetic process6.40E-05
19GO:0055114: oxidation-reduction process6.71E-05
20GO:0019252: starch biosynthetic process7.21E-05
21GO:0010021: amylopectin biosynthetic process1.12E-04
22GO:0010027: thylakoid membrane organization1.61E-04
23GO:0042549: photosystem II stabilization2.46E-04
24GO:0042254: ribosome biogenesis3.96E-04
25GO:0009645: response to low light intensity stimulus4.25E-04
26GO:0043953: protein transport by the Tat complex4.40E-04
27GO:0015671: oxygen transport4.40E-04
28GO:1904966: positive regulation of vitamin E biosynthetic process4.40E-04
29GO:0010426: DNA methylation on cytosine within a CHH sequence4.40E-04
30GO:0000481: maturation of 5S rRNA4.40E-04
31GO:0015801: aromatic amino acid transport4.40E-04
32GO:1904964: positive regulation of phytol biosynthetic process4.40E-04
33GO:0065002: intracellular protein transmembrane transport4.40E-04
34GO:0043087: regulation of GTPase activity4.40E-04
35GO:0071461: cellular response to redox state4.40E-04
36GO:1902458: positive regulation of stomatal opening4.40E-04
37GO:0048363: mucilage pectin metabolic process4.40E-04
38GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.40E-04
39GO:0006810: transport6.13E-04
40GO:0032544: plastid translation6.48E-04
41GO:0006779: porphyrin-containing compound biosynthetic process9.15E-04
42GO:0000256: allantoin catabolic process9.50E-04
43GO:0071668: plant-type cell wall assembly9.50E-04
44GO:0071457: cellular response to ozone9.50E-04
45GO:0080183: response to photooxidative stress9.50E-04
46GO:0006729: tetrahydrobiopterin biosynthetic process9.50E-04
47GO:1903426: regulation of reactive oxygen species biosynthetic process9.50E-04
48GO:0030388: fructose 1,6-bisphosphate metabolic process9.50E-04
49GO:0051262: protein tetramerization9.50E-04
50GO:0010275: NAD(P)H dehydrogenase complex assembly9.50E-04
51GO:0035304: regulation of protein dephosphorylation9.50E-04
52GO:0080005: photosystem stoichiometry adjustment9.50E-04
53GO:1902326: positive regulation of chlorophyll biosynthetic process9.50E-04
54GO:0006782: protoporphyrinogen IX biosynthetic process1.06E-03
55GO:0006352: DNA-templated transcription, initiation1.23E-03
56GO:0019684: photosynthesis, light reaction1.23E-03
57GO:0034051: negative regulation of plant-type hypersensitive response1.55E-03
58GO:0044375: regulation of peroxisome size1.55E-03
59GO:0005977: glycogen metabolic process1.55E-03
60GO:0006000: fructose metabolic process1.55E-03
61GO:0006518: peptide metabolic process1.55E-03
62GO:0010136: ureide catabolic process1.55E-03
63GO:0006094: gluconeogenesis1.59E-03
64GO:0006412: translation1.68E-03
65GO:0018298: protein-chromophore linkage1.78E-03
66GO:0019253: reductive pentose-phosphate cycle1.80E-03
67GO:1901332: negative regulation of lateral root development2.24E-03
68GO:0042989: sequestering of actin monomers2.24E-03
69GO:0006986: response to unfolded protein2.24E-03
70GO:0010371: regulation of gibberellin biosynthetic process2.24E-03
71GO:0071484: cellular response to light intensity2.24E-03
72GO:0051085: chaperone mediated protein folding requiring cofactor2.24E-03
73GO:0009152: purine ribonucleotide biosynthetic process2.24E-03
74GO:0046653: tetrahydrofolate metabolic process2.24E-03
75GO:0009052: pentose-phosphate shunt, non-oxidative branch2.24E-03
76GO:0033014: tetrapyrrole biosynthetic process2.24E-03
77GO:0010731: protein glutathionylation2.24E-03
78GO:0006145: purine nucleobase catabolic process2.24E-03
79GO:0009853: photorespiration2.41E-03
80GO:0009768: photosynthesis, light harvesting in photosystem I2.75E-03
81GO:0006631: fatty acid metabolic process3.00E-03
82GO:0071486: cellular response to high light intensity3.01E-03
83GO:0015994: chlorophyll metabolic process3.01E-03
84GO:0006536: glutamate metabolic process3.01E-03
85GO:0010600: regulation of auxin biosynthetic process3.01E-03
86GO:0019748: secondary metabolic process3.31E-03
87GO:0045038: protein import into chloroplast thylakoid membrane3.85E-03
88GO:0043097: pyrimidine nucleoside salvage3.85E-03
89GO:0009107: lipoate biosynthetic process3.85E-03
90GO:0000304: response to singlet oxygen3.85E-03
91GO:0080110: sporopollenin biosynthetic process3.85E-03
92GO:0071493: cellular response to UV-B3.85E-03
93GO:0030041: actin filament polymerization3.85E-03
94GO:0032259: methylation4.41E-03
95GO:0006206: pyrimidine nucleobase metabolic process4.77E-03
96GO:0006655: phosphatidylglycerol biosynthetic process4.77E-03
97GO:0010190: cytochrome b6f complex assembly4.77E-03
98GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.77E-03
99GO:1901259: chloroplast rRNA processing5.75E-03
100GO:0010189: vitamin E biosynthetic process5.75E-03
101GO:0009854: oxidative photosynthetic carbon pathway5.75E-03
102GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.75E-03
103GO:0051510: regulation of unidimensional cell growth6.80E-03
104GO:0010161: red light signaling pathway6.80E-03
105GO:1900057: positive regulation of leaf senescence6.80E-03
106GO:0042255: ribosome assembly7.91E-03
107GO:0009704: de-etiolation7.91E-03
108GO:0032508: DNA duplex unwinding7.91E-03
109GO:0006353: DNA-templated transcription, termination7.91E-03
110GO:2000070: regulation of response to water deprivation7.91E-03
111GO:0016559: peroxisome fission7.91E-03
112GO:0010928: regulation of auxin mediated signaling pathway7.91E-03
113GO:0005978: glycogen biosynthetic process7.91E-03
114GO:0009657: plastid organization9.09E-03
115GO:0006526: arginine biosynthetic process9.09E-03
116GO:0017004: cytochrome complex assembly9.09E-03
117GO:0006002: fructose 6-phosphate metabolic process9.09E-03
118GO:0015996: chlorophyll catabolic process9.09E-03
119GO:0019430: removal of superoxide radicals9.09E-03
120GO:0007186: G-protein coupled receptor signaling pathway9.09E-03
121GO:0019432: triglyceride biosynthetic process1.03E-02
122GO:0010206: photosystem II repair1.03E-02
123GO:0005982: starch metabolic process1.16E-02
124GO:0010205: photoinhibition1.16E-02
125GO:0048354: mucilage biosynthetic process involved in seed coat development1.16E-02
126GO:0009817: defense response to fungus, incompatible interaction1.17E-02
127GO:0006535: cysteine biosynthetic process from serine1.30E-02
128GO:0043069: negative regulation of programmed cell death1.30E-02
129GO:0007568: aging1.35E-02
130GO:0006633: fatty acid biosynthetic process1.36E-02
131GO:0008285: negative regulation of cell proliferation1.44E-02
132GO:0018119: peptidyl-cysteine S-nitrosylation1.44E-02
133GO:0009089: lysine biosynthetic process via diaminopimelate1.44E-02
134GO:0016051: carbohydrate biosynthetic process1.48E-02
135GO:0016024: CDP-diacylglycerol biosynthetic process1.58E-02
136GO:0045037: protein import into chloroplast stroma1.58E-02
137GO:0006807: nitrogen compound metabolic process1.73E-02
138GO:0018107: peptidyl-threonine phosphorylation1.73E-02
139GO:0009767: photosynthetic electron transport chain1.73E-02
140GO:0005986: sucrose biosynthetic process1.73E-02
141GO:0009266: response to temperature stimulus1.89E-02
142GO:0034605: cellular response to heat1.89E-02
143GO:0090351: seedling development2.05E-02
144GO:0007031: peroxisome organization2.05E-02
145GO:0009644: response to high light intensity2.07E-02
146GO:0009636: response to toxic substance2.15E-02
147GO:0006636: unsaturated fatty acid biosynthetic process2.21E-02
148GO:0019762: glucosinolate catabolic process2.21E-02
149GO:0007010: cytoskeleton organization2.38E-02
150GO:0019344: cysteine biosynthetic process2.38E-02
151GO:0007017: microtubule-based process2.55E-02
152GO:0010073: meristem maintenance2.55E-02
153GO:0006364: rRNA processing2.58E-02
154GO:0003333: amino acid transmembrane transport2.73E-02
155GO:0048511: rhythmic process2.73E-02
156GO:0061077: chaperone-mediated protein folding2.73E-02
157GO:0006306: DNA methylation2.73E-02
158GO:0031408: oxylipin biosynthetic process2.73E-02
159GO:0080092: regulation of pollen tube growth2.91E-02
160GO:0010017: red or far-red light signaling pathway2.91E-02
161GO:0016226: iron-sulfur cluster assembly2.91E-02
162GO:0009625: response to insect3.10E-02
163GO:0010227: floral organ abscission3.10E-02
164GO:0009561: megagametogenesis3.29E-02
165GO:0010584: pollen exine formation3.29E-02
166GO:0005975: carbohydrate metabolic process3.47E-02
167GO:0042335: cuticle development3.68E-02
168GO:0000271: polysaccharide biosynthetic process3.68E-02
169GO:0006606: protein import into nucleus3.68E-02
170GO:0042631: cellular response to water deprivation3.68E-02
171GO:0010182: sugar mediated signaling pathway3.88E-02
172GO:0006520: cellular amino acid metabolic process3.88E-02
173GO:0045489: pectin biosynthetic process3.88E-02
174GO:0071472: cellular response to salt stress3.88E-02
175GO:0009791: post-embryonic development4.30E-02
176GO:0000302: response to reactive oxygen species4.51E-02
177GO:0032502: developmental process4.73E-02
178GO:0009058: biosynthetic process4.83E-02
179GO:0009845: seed germination4.95E-02
RankGO TermAdjusted P value
1GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
2GO:0008974: phosphoribulokinase activity0.00E+00
3GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
4GO:0004760: serine-pyruvate transaminase activity0.00E+00
5GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
6GO:0008465: glycerate dehydrogenase activity0.00E+00
7GO:0046408: chlorophyll synthetase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0050281: serine-glyoxylate transaminase activity0.00E+00
10GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
11GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
12GO:0019144: ADP-sugar diphosphatase activity0.00E+00
13GO:0090711: FMN hydrolase activity0.00E+00
14GO:0045550: geranylgeranyl reductase activity0.00E+00
15GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
16GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
17GO:0019843: rRNA binding3.24E-08
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.19E-06
19GO:0016851: magnesium chelatase activity6.40E-05
20GO:0048038: quinone binding8.21E-05
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.02E-04
22GO:0001053: plastid sigma factor activity1.12E-04
23GO:0016987: sigma factor activity1.12E-04
24GO:0016491: oxidoreductase activity1.34E-04
25GO:0008266: poly(U) RNA binding1.53E-04
26GO:0003735: structural constituent of ribosome1.74E-04
27GO:0005528: FK506 binding2.44E-04
28GO:0004325: ferrochelatase activity4.40E-04
29GO:0005080: protein kinase C binding4.40E-04
30GO:0004853: uroporphyrinogen decarboxylase activity4.40E-04
31GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.40E-04
32GO:0005344: oxygen transporter activity4.40E-04
33GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.40E-04
34GO:0005227: calcium activated cation channel activity4.40E-04
35GO:0016776: phosphotransferase activity, phosphate group as acceptor4.40E-04
36GO:0004856: xylulokinase activity4.40E-04
37GO:0080042: ADP-glucose pyrophosphohydrolase activity4.40E-04
38GO:0080132: fatty acid alpha-hydroxylase activity4.40E-04
39GO:0010242: oxygen evolving activity4.40E-04
40GO:0050017: L-3-cyanoalanine synthase activity9.50E-04
41GO:0008883: glutamyl-tRNA reductase activity9.50E-04
42GO:0047746: chlorophyllase activity9.50E-04
43GO:0042389: omega-3 fatty acid desaturase activity9.50E-04
44GO:0080041: ADP-ribose pyrophosphohydrolase activity9.50E-04
45GO:0009977: proton motive force dependent protein transmembrane transporter activity9.50E-04
46GO:0015173: aromatic amino acid transmembrane transporter activity9.50E-04
47GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.50E-04
48GO:0018708: thiol S-methyltransferase activity9.50E-04
49GO:0003844: 1,4-alpha-glucan branching enzyme activity9.50E-04
50GO:0016630: protochlorophyllide reductase activity9.50E-04
51GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.50E-04
52GO:0019156: isoamylase activity9.50E-04
53GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.50E-04
54GO:0016168: chlorophyll binding1.36E-03
55GO:0004751: ribose-5-phosphate isomerase activity1.55E-03
56GO:0030267: glyoxylate reductase (NADP) activity1.55E-03
57GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.55E-03
58GO:0070402: NADPH binding1.55E-03
59GO:0008864: formyltetrahydrofolate deformylase activity1.55E-03
60GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.55E-03
61GO:0043169: cation binding1.55E-03
62GO:0005504: fatty acid binding1.55E-03
63GO:0016992: lipoate synthase activity1.55E-03
64GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.55E-03
65GO:0031072: heat shock protein binding1.59E-03
66GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.24E-03
67GO:0043023: ribosomal large subunit binding2.24E-03
68GO:0008097: 5S rRNA binding2.24E-03
69GO:0004351: glutamate decarboxylase activity2.24E-03
70GO:0031409: pigment binding2.25E-03
71GO:0003746: translation elongation factor activity2.41E-03
72GO:0043495: protein anchor3.01E-03
73GO:0008453: alanine-glyoxylate transaminase activity3.01E-03
74GO:0045430: chalcone isomerase activity3.01E-03
75GO:0009011: starch synthase activity3.01E-03
76GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity3.01E-03
77GO:0016773: phosphotransferase activity, alcohol group as acceptor3.85E-03
78GO:0003785: actin monomer binding3.85E-03
79GO:0008374: O-acyltransferase activity3.85E-03
80GO:0003959: NADPH dehydrogenase activity3.85E-03
81GO:0005275: amine transmembrane transporter activity3.85E-03
82GO:0003727: single-stranded RNA binding3.93E-03
83GO:0016787: hydrolase activity4.56E-03
84GO:0005509: calcium ion binding4.72E-03
85GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.77E-03
86GO:0004784: superoxide dismutase activity4.77E-03
87GO:0042578: phosphoric ester hydrolase activity4.77E-03
88GO:0004332: fructose-bisphosphate aldolase activity4.77E-03
89GO:0004556: alpha-amylase activity4.77E-03
90GO:0004130: cytochrome-c peroxidase activity4.77E-03
91GO:0042802: identical protein binding5.02E-03
92GO:0005261: cation channel activity5.75E-03
93GO:0003886: DNA (cytosine-5-)-methyltransferase activity5.75E-03
94GO:0004124: cysteine synthase activity5.75E-03
95GO:0051920: peroxiredoxin activity5.75E-03
96GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.75E-03
97GO:0004849: uridine kinase activity5.75E-03
98GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.75E-03
99GO:0008168: methyltransferase activity6.40E-03
100GO:0004601: peroxidase activity6.78E-03
101GO:0019899: enzyme binding6.80E-03
102GO:0051082: unfolded protein binding7.65E-03
103GO:0004033: aldo-keto reductase (NADP) activity7.91E-03
104GO:0016209: antioxidant activity7.91E-03
105GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.09E-03
106GO:0008135: translation factor activity, RNA binding9.09E-03
107GO:0005515: protein binding9.47E-03
108GO:0071949: FAD binding1.03E-02
109GO:0004252: serine-type endopeptidase activity1.17E-02
110GO:0004222: metalloendopeptidase activity1.29E-02
111GO:0005089: Rho guanyl-nucleotide exchange factor activity1.44E-02
112GO:0004565: beta-galactosidase activity1.73E-02
113GO:0004364: glutathione transferase activity1.84E-02
114GO:0004185: serine-type carboxypeptidase activity1.91E-02
115GO:0051537: 2 iron, 2 sulfur cluster binding2.07E-02
116GO:0043621: protein self-association2.07E-02
117GO:0035091: phosphatidylinositol binding2.07E-02
118GO:0051287: NAD binding2.32E-02
119GO:0051536: iron-sulfur cluster binding2.38E-02
120GO:0051087: chaperone binding2.55E-02
121GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.58E-02
122GO:0003690: double-stranded DNA binding2.67E-02
123GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.91E-02
124GO:0022891: substrate-specific transmembrane transporter activity3.10E-02
125GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.15E-02
126GO:0008080: N-acetyltransferase activity3.88E-02
127GO:0050662: coenzyme binding4.09E-02
128GO:0003824: catalytic activity4.93E-02
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Gene type



Gene DE type