Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G09050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:0009249: protein lipoylation0.00E+00
4GO:1905421: regulation of plant organ morphogenesis0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0030155: regulation of cell adhesion0.00E+00
7GO:0017038: protein import0.00E+00
8GO:0046460: neutral lipid biosynthetic process0.00E+00
9GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
10GO:0090279: regulation of calcium ion import0.00E+00
11GO:0090071: negative regulation of ribosome biogenesis0.00E+00
12GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
13GO:0031116: positive regulation of microtubule polymerization0.00E+00
14GO:0042820: vitamin B6 catabolic process0.00E+00
15GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
16GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
17GO:0042407: cristae formation0.00E+00
18GO:0042821: pyridoxal biosynthetic process0.00E+00
19GO:0042817: pyridoxal metabolic process0.00E+00
20GO:0009106: lipoate metabolic process0.00E+00
21GO:1905177: tracheary element differentiation0.00E+00
22GO:0090042: tubulin deacetylation0.00E+00
23GO:0071474: cellular hyperosmotic response0.00E+00
24GO:0006114: glycerol biosynthetic process0.00E+00
25GO:0018023: peptidyl-lysine trimethylation0.00E+00
26GO:0009658: chloroplast organization3.51E-05
27GO:0006415: translational termination1.52E-04
28GO:0032543: mitochondrial translation2.63E-04
29GO:0045038: protein import into chloroplast thylakoid membrane2.63E-04
30GO:0030488: tRNA methylation4.90E-04
31GO:1902458: positive regulation of stomatal opening5.72E-04
32GO:0006747: FAD biosynthetic process5.72E-04
33GO:0006419: alanyl-tRNA aminoacylation5.72E-04
34GO:0000476: maturation of 4.5S rRNA5.72E-04
35GO:0009443: pyridoxal 5'-phosphate salvage5.72E-04
36GO:0000967: rRNA 5'-end processing5.72E-04
37GO:2000025: regulation of leaf formation5.72E-04
38GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.72E-04
39GO:0015671: oxygen transport5.72E-04
40GO:0000012: single strand break repair5.72E-04
41GO:0043266: regulation of potassium ion transport5.72E-04
42GO:1901135: carbohydrate derivative metabolic process5.72E-04
43GO:0042547: cell wall modification involved in multidimensional cell growth5.72E-04
44GO:0019478: D-amino acid catabolic process5.72E-04
45GO:0042371: vitamin K biosynthetic process5.72E-04
46GO:2000021: regulation of ion homeostasis5.72E-04
47GO:0006605: protein targeting7.81E-04
48GO:0006353: DNA-templated transcription, termination7.81E-04
49GO:0009657: plastid organization9.50E-04
50GO:0019432: triglyceride biosynthetic process1.14E-03
51GO:0001682: tRNA 5'-leader removal1.23E-03
52GO:1903426: regulation of reactive oxygen species biosynthetic process1.23E-03
53GO:0015804: neutral amino acid transport1.23E-03
54GO:0051262: protein tetramerization1.23E-03
55GO:0034470: ncRNA processing1.23E-03
56GO:0010198: synergid death1.23E-03
57GO:0006739: NADP metabolic process1.23E-03
58GO:1900871: chloroplast mRNA modification1.23E-03
59GO:0006432: phenylalanyl-tRNA aminoacylation1.23E-03
60GO:0018026: peptidyl-lysine monomethylation1.23E-03
61GO:1900033: negative regulation of trichome patterning1.23E-03
62GO:0034755: iron ion transmembrane transport1.23E-03
63GO:0006423: cysteinyl-tRNA aminoacylation1.23E-03
64GO:0006435: threonyl-tRNA aminoacylation1.23E-03
65GO:0009220: pyrimidine ribonucleotide biosynthetic process1.23E-03
66GO:1900865: chloroplast RNA modification1.34E-03
67GO:0006413: translational initiation1.35E-03
68GO:0045036: protein targeting to chloroplast1.56E-03
69GO:0006782: protoporphyrinogen IX biosynthetic process1.56E-03
70GO:0033591: response to L-ascorbic acid2.02E-03
71GO:0048281: inflorescence morphogenesis2.02E-03
72GO:0006954: inflammatory response2.02E-03
73GO:0010623: programmed cell death involved in cell development2.02E-03
74GO:0015940: pantothenate biosynthetic process2.02E-03
75GO:0001578: microtubule bundle formation2.02E-03
76GO:0045493: xylan catabolic process2.02E-03
77GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition2.02E-03
78GO:0010027: thylakoid membrane organization2.10E-03
79GO:2000012: regulation of auxin polar transport2.36E-03
80GO:0009627: systemic acquired resistance2.42E-03
81GO:0015995: chlorophyll biosynthetic process2.59E-03
82GO:0010207: photosystem II assembly2.67E-03
83GO:0009793: embryo development ending in seed dormancy2.71E-03
84GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.93E-03
85GO:0009102: biotin biosynthetic process2.93E-03
86GO:0046653: tetrahydrofolate metabolic process2.93E-03
87GO:0010239: chloroplast mRNA processing2.93E-03
88GO:0008615: pyridoxine biosynthetic process2.93E-03
89GO:0006424: glutamyl-tRNA aminoacylation2.93E-03
90GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.93E-03
91GO:0010148: transpiration2.93E-03
92GO:0016556: mRNA modification2.93E-03
93GO:0090351: seedling development2.99E-03
94GO:0048629: trichome patterning3.95E-03
95GO:0010109: regulation of photosynthesis3.95E-03
96GO:0051322: anaphase3.95E-03
97GO:0009765: photosynthesis, light harvesting3.95E-03
98GO:0022622: root system development3.95E-03
99GO:0071483: cellular response to blue light3.95E-03
100GO:0006734: NADH metabolic process3.95E-03
101GO:0044205: 'de novo' UMP biosynthetic process3.95E-03
102GO:0010508: positive regulation of autophagy3.95E-03
103GO:0007020: microtubule nucleation3.95E-03
104GO:0006418: tRNA aminoacylation for protein translation4.09E-03
105GO:0006730: one-carbon metabolic process4.93E-03
106GO:0009107: lipoate biosynthetic process5.07E-03
107GO:0016123: xanthophyll biosynthetic process5.07E-03
108GO:0080110: sporopollenin biosynthetic process5.07E-03
109GO:0046785: microtubule polymerization5.07E-03
110GO:0046907: intracellular transport5.07E-03
111GO:0016120: carotene biosynthetic process5.07E-03
112GO:0010236: plastoquinone biosynthetic process5.07E-03
113GO:0009306: protein secretion5.86E-03
114GO:0040008: regulation of growth5.97E-03
115GO:0042793: transcription from plastid promoter6.29E-03
116GO:0010190: cytochrome b6f complex assembly6.29E-03
117GO:0016554: cytidine to uridine editing6.29E-03
118GO:0032973: amino acid export6.29E-03
119GO:0050665: hydrogen peroxide biosynthetic process6.29E-03
120GO:0009733: response to auxin6.56E-03
121GO:0008033: tRNA processing6.87E-03
122GO:0080086: stamen filament development7.60E-03
123GO:0009648: photoperiodism7.60E-03
124GO:0042372: phylloquinone biosynthetic process7.60E-03
125GO:0017148: negative regulation of translation7.60E-03
126GO:0034389: lipid particle organization7.60E-03
127GO:1901259: chloroplast rRNA processing7.60E-03
128GO:0009854: oxidative photosynthetic carbon pathway7.60E-03
129GO:0010103: stomatal complex morphogenesis9.00E-03
130GO:0032880: regulation of protein localization9.00E-03
131GO:0009395: phospholipid catabolic process9.00E-03
132GO:0048528: post-embryonic root development9.00E-03
133GO:0009772: photosynthetic electron transport in photosystem II9.00E-03
134GO:0043090: amino acid import9.00E-03
135GO:0070370: cellular heat acclimation9.00E-03
136GO:0006614: SRP-dependent cotranslational protein targeting to membrane9.00E-03
137GO:0010196: nonphotochemical quenching9.00E-03
138GO:0006400: tRNA modification9.00E-03
139GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process9.00E-03
140GO:0000105: histidine biosynthetic process1.05E-02
141GO:0009231: riboflavin biosynthetic process1.05E-02
142GO:0052543: callose deposition in cell wall1.05E-02
143GO:0042255: ribosome assembly1.05E-02
144GO:0046620: regulation of organ growth1.05E-02
145GO:2000070: regulation of response to water deprivation1.05E-02
146GO:0070413: trehalose metabolism in response to stress1.05E-02
147GO:0017004: cytochrome complex assembly1.21E-02
148GO:0001558: regulation of cell growth1.21E-02
149GO:0071482: cellular response to light stimulus1.21E-02
150GO:0022900: electron transport chain1.21E-02
151GO:0010204: defense response signaling pathway, resistance gene-independent1.21E-02
152GO:0032544: plastid translation1.21E-02
153GO:0015780: nucleotide-sugar transport1.37E-02
154GO:0009821: alkaloid biosynthetic process1.37E-02
155GO:0010206: photosystem II repair1.37E-02
156GO:0080144: amino acid homeostasis1.37E-02
157GO:0006098: pentose-phosphate shunt1.37E-02
158GO:0006783: heme biosynthetic process1.37E-02
159GO:0000373: Group II intron splicing1.37E-02
160GO:0043067: regulation of programmed cell death1.54E-02
161GO:0006779: porphyrin-containing compound biosynthetic process1.54E-02
162GO:0006949: syncytium formation1.72E-02
163GO:0009684: indoleacetic acid biosynthetic process1.91E-02
164GO:0019684: photosynthesis, light reaction1.91E-02
165GO:0009089: lysine biosynthetic process via diaminopimelate1.91E-02
166GO:0009073: aromatic amino acid family biosynthetic process1.91E-02
167GO:1903507: negative regulation of nucleic acid-templated transcription1.91E-02
168GO:0006879: cellular iron ion homeostasis1.91E-02
169GO:0006352: DNA-templated transcription, initiation1.91E-02
170GO:0007568: aging2.02E-02
171GO:0005983: starch catabolic process2.11E-02
172GO:0045037: protein import into chloroplast stroma2.11E-02
173GO:0045087: innate immune response2.22E-02
174GO:0009725: response to hormone2.31E-02
175GO:0006094: gluconeogenesis2.31E-02
176GO:0006302: double-strand break repair2.51E-02
177GO:0006446: regulation of translational initiation2.51E-02
178GO:0045490: pectin catabolic process2.55E-02
179GO:0019853: L-ascorbic acid biosynthetic process2.73E-02
180GO:0071732: cellular response to nitric oxide2.73E-02
181GO:0006071: glycerol metabolic process2.95E-02
182GO:0006833: water transport2.95E-02
183GO:0000162: tryptophan biosynthetic process2.95E-02
184GO:0005975: carbohydrate metabolic process3.15E-02
185GO:0005992: trehalose biosynthetic process3.17E-02
186GO:0009116: nucleoside metabolic process3.17E-02
187GO:0009944: polarity specification of adaxial/abaxial axis3.17E-02
188GO:0030150: protein import into mitochondrial matrix3.17E-02
189GO:0007010: cytoskeleton organization3.17E-02
190GO:0008380: RNA splicing3.18E-02
191GO:0009965: leaf morphogenesis3.22E-02
192GO:0051302: regulation of cell division3.40E-02
193GO:0016575: histone deacetylation3.40E-02
194GO:0043622: cortical microtubule organization3.40E-02
195GO:0009664: plant-type cell wall organization3.59E-02
196GO:0048511: rhythmic process3.64E-02
197GO:0061077: chaperone-mediated protein folding3.64E-02
198GO:0003333: amino acid transmembrane transport3.64E-02
199GO:0016998: cell wall macromolecule catabolic process3.64E-02
200GO:0006364: rRNA processing3.85E-02
201GO:0009814: defense response, incompatible interaction3.88E-02
202GO:2000022: regulation of jasmonic acid mediated signaling pathway3.88E-02
203GO:0031348: negative regulation of defense response3.88E-02
204GO:0006012: galactose metabolic process4.13E-02
205GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.13E-02
206GO:0071369: cellular response to ethylene stimulus4.13E-02
207GO:0001944: vasculature development4.13E-02
208GO:0010089: xylem development4.38E-02
209GO:0010584: pollen exine formation4.38E-02
210GO:0016117: carotenoid biosynthetic process4.64E-02
211GO:0051028: mRNA transport4.64E-02
212GO:0008284: positive regulation of cell proliferation4.64E-02
213GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.64E-02
214GO:0048653: anther development4.90E-02
215GO:0034220: ion transmembrane transport4.90E-02
RankGO TermAdjusted P value
1GO:0015267: channel activity0.00E+00
2GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
3GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
4GO:0005048: signal sequence binding0.00E+00
5GO:0004076: biotin synthase activity0.00E+00
6GO:0043136: glycerol-3-phosphatase activity0.00E+00
7GO:0000121: glycerol-1-phosphatase activity0.00E+00
8GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
9GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
10GO:0043864: indoleacetamide hydrolase activity0.00E+00
11GO:0010349: L-galactose dehydrogenase activity0.00E+00
12GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
13GO:0008115: sarcosine oxidase activity0.00E+00
14GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
15GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
16GO:0050613: delta14-sterol reductase activity0.00E+00
17GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
18GO:0043014: alpha-tubulin binding0.00E+00
19GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
20GO:0051721: protein phosphatase 2A binding0.00E+00
21GO:0042903: tubulin deacetylase activity0.00E+00
22GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
23GO:0004823: leucine-tRNA ligase activity0.00E+00
24GO:0045435: lycopene epsilon cyclase activity0.00E+00
25GO:0004822: isoleucine-tRNA ligase activity0.00E+00
26GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.42E-05
27GO:0005528: FK506 binding2.95E-05
28GO:0002161: aminoacyl-tRNA editing activity4.75E-05
29GO:0003747: translation release factor activity7.28E-05
30GO:0016149: translation release factor activity, codon specific1.00E-04
31GO:0016851: magnesium chelatase activity1.00E-04
32GO:0000049: tRNA binding1.85E-04
33GO:0016788: hydrolase activity, acting on ester bonds2.10E-04
34GO:0004040: amidase activity2.63E-04
35GO:0016784: 3-mercaptopyruvate sulfurtransferase activity5.72E-04
36GO:0005344: oxygen transporter activity5.72E-04
37GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.72E-04
38GO:0005227: calcium activated cation channel activity5.72E-04
39GO:0004733: pyridoxamine-phosphate oxidase activity5.72E-04
40GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.72E-04
41GO:0004856: xylulokinase activity5.72E-04
42GO:0009496: plastoquinol--plastocyanin reductase activity5.72E-04
43GO:0097367: carbohydrate derivative binding5.72E-04
44GO:0019203: carbohydrate phosphatase activity5.72E-04
45GO:0050308: sugar-phosphatase activity5.72E-04
46GO:0004813: alanine-tRNA ligase activity5.72E-04
47GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.72E-04
48GO:0004853: uroporphyrinogen decarboxylase activity5.72E-04
49GO:0052857: NADPHX epimerase activity5.72E-04
50GO:0052856: NADHX epimerase activity5.72E-04
51GO:0030570: pectate lyase activity6.71E-04
52GO:0043022: ribosome binding7.81E-04
53GO:0004033: aldo-keto reductase (NADP) activity7.81E-04
54GO:0005525: GTP binding1.06E-03
55GO:0009977: proton motive force dependent protein transmembrane transporter activity1.23E-03
56GO:0016415: octanoyltransferase activity1.23E-03
57GO:0004817: cysteine-tRNA ligase activity1.23E-03
58GO:0004829: threonine-tRNA ligase activity1.23E-03
59GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.23E-03
60GO:0003919: FMN adenylyltransferase activity1.23E-03
61GO:0004826: phenylalanine-tRNA ligase activity1.23E-03
62GO:0015172: acidic amino acid transmembrane transporter activity1.23E-03
63GO:0017118: lipoyltransferase activity1.23E-03
64GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.29E-03
65GO:0070402: NADPH binding2.02E-03
66GO:0052692: raffinose alpha-galactosidase activity2.02E-03
67GO:0015462: ATPase-coupled protein transmembrane transporter activity2.02E-03
68GO:0004180: carboxypeptidase activity2.02E-03
69GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.02E-03
70GO:0003913: DNA photolyase activity2.02E-03
71GO:0003743: translation initiation factor activity2.02E-03
72GO:0004557: alpha-galactosidase activity2.02E-03
73GO:0003924: GTPase activity2.85E-03
74GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.93E-03
75GO:0001872: (1->3)-beta-D-glucan binding2.93E-03
76GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.93E-03
77GO:0015175: neutral amino acid transmembrane transporter activity2.93E-03
78GO:0048487: beta-tubulin binding2.93E-03
79GO:0004792: thiosulfate sulfurtransferase activity2.93E-03
80GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.93E-03
81GO:0016656: monodehydroascorbate reductase (NADH) activity2.93E-03
82GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.93E-03
83GO:0043023: ribosomal large subunit binding2.93E-03
84GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.95E-03
85GO:0004659: prenyltransferase activity3.95E-03
86GO:0016279: protein-lysine N-methyltransferase activity3.95E-03
87GO:0001053: plastid sigma factor activity3.95E-03
88GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.95E-03
89GO:0004045: aminoacyl-tRNA hydrolase activity3.95E-03
90GO:0009044: xylan 1,4-beta-xylosidase activity3.95E-03
91GO:0016987: sigma factor activity3.95E-03
92GO:0019199: transmembrane receptor protein kinase activity3.95E-03
93GO:0042277: peptide binding3.95E-03
94GO:0008891: glycolate oxidase activity3.95E-03
95GO:0046556: alpha-L-arabinofuranosidase activity3.95E-03
96GO:0004176: ATP-dependent peptidase activity4.50E-03
97GO:0016773: phosphotransferase activity, alcohol group as acceptor5.07E-03
98GO:2001070: starch binding6.29E-03
99GO:0080030: methyl indole-3-acetate esterase activity6.29E-03
100GO:0004332: fructose-bisphosphate aldolase activity6.29E-03
101GO:0004526: ribonuclease P activity6.29E-03
102GO:0042578: phosphoric ester hydrolase activity6.29E-03
103GO:0004812: aminoacyl-tRNA ligase activity6.35E-03
104GO:0003730: mRNA 3'-UTR binding7.60E-03
105GO:0004144: diacylglycerol O-acyltransferase activity7.60E-03
106GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.60E-03
107GO:0005261: cation channel activity7.60E-03
108GO:0010181: FMN binding7.98E-03
109GO:0005338: nucleotide-sugar transmembrane transporter activity9.00E-03
110GO:0009881: photoreceptor activity9.00E-03
111GO:0008312: 7S RNA binding1.05E-02
112GO:0003723: RNA binding1.11E-02
113GO:0008237: metallopeptidase activity1.19E-02
114GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.21E-02
115GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.37E-02
116GO:0016844: strictosidine synthase activity1.54E-02
117GO:0005381: iron ion transmembrane transporter activity1.54E-02
118GO:0008236: serine-type peptidase activity1.66E-02
119GO:0004805: trehalose-phosphatase activity1.72E-02
120GO:0016829: lyase activity1.88E-02
121GO:0047372: acylglycerol lipase activity1.91E-02
122GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.02E-02
123GO:0003746: translation elongation factor activity2.22E-02
124GO:0031072: heat shock protein binding2.31E-02
125GO:0004565: beta-galactosidase activity2.31E-02
126GO:0015266: protein channel activity2.31E-02
127GO:0003993: acid phosphatase activity2.32E-02
128GO:0016491: oxidoreductase activity2.36E-02
129GO:0008083: growth factor activity2.51E-02
130GO:0008266: poly(U) RNA binding2.51E-02
131GO:0008017: microtubule binding2.70E-02
132GO:0016787: hydrolase activity2.86E-02
133GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.95E-02
134GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.95E-02
135GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.95E-02
136GO:0051537: 2 iron, 2 sulfur cluster binding3.10E-02
137GO:0043621: protein self-association3.10E-02
138GO:0051536: iron-sulfur cluster binding3.17E-02
139GO:0004407: histone deacetylase activity3.17E-02
140GO:0003714: transcription corepressor activity3.17E-02
141GO:0051087: chaperone binding3.40E-02
142GO:0004519: endonuclease activity3.47E-02
143GO:0003690: double-stranded DNA binding3.99E-02
144GO:0015171: amino acid transmembrane transporter activity4.26E-02
145GO:0003727: single-stranded RNA binding4.38E-02
146GO:0003756: protein disulfide isomerase activity4.38E-02
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Gene type



Gene DE type