Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G09035

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
6GO:0009606: tropism0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0007638: mechanosensory behavior0.00E+00
9GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
10GO:0097164: ammonium ion metabolic process0.00E+00
11GO:0045184: establishment of protein localization0.00E+00
12GO:0015843: methylammonium transport0.00E+00
13GO:0031222: arabinan catabolic process0.00E+00
14GO:0046620: regulation of organ growth1.15E-06
15GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.51E-06
16GO:0042793: transcription from plastid promoter1.38E-05
17GO:0009926: auxin polar transport3.03E-05
18GO:0009734: auxin-activated signaling pathway5.94E-05
19GO:0009658: chloroplast organization6.46E-05
20GO:0007389: pattern specification process7.23E-05
21GO:0009416: response to light stimulus1.34E-04
22GO:2000038: regulation of stomatal complex development2.12E-04
23GO:0006468: protein phosphorylation2.92E-04
24GO:0010252: auxin homeostasis3.19E-04
25GO:0010027: thylakoid membrane organization4.25E-04
26GO:0009944: polarity specification of adaxial/abaxial axis5.29E-04
27GO:0009451: RNA modification5.48E-04
28GO:0042659: regulation of cell fate specification6.48E-04
29GO:0070509: calcium ion import6.48E-04
30GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.48E-04
31GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.48E-04
32GO:0010063: positive regulation of trichoblast fate specification6.48E-04
33GO:0090558: plant epidermis development6.48E-04
34GO:0010480: microsporocyte differentiation6.48E-04
35GO:0042371: vitamin K biosynthetic process6.48E-04
36GO:1903866: palisade mesophyll development6.48E-04
37GO:0035987: endodermal cell differentiation6.48E-04
38GO:0006436: tryptophanyl-tRNA aminoacylation6.48E-04
39GO:0000066: mitochondrial ornithine transport6.48E-04
40GO:0034757: negative regulation of iron ion transport6.48E-04
41GO:0048437: floral organ development7.55E-04
42GO:0010103: stomatal complex morphogenesis7.55E-04
43GO:0009657: plastid organization1.14E-03
44GO:0000373: Group II intron splicing1.37E-03
45GO:0000902: cell morphogenesis1.37E-03
46GO:0010254: nectary development1.40E-03
47GO:0070981: L-asparagine biosynthetic process1.40E-03
48GO:0060359: response to ammonium ion1.40E-03
49GO:0010271: regulation of chlorophyll catabolic process1.40E-03
50GO:1902326: positive regulation of chlorophyll biosynthetic process1.40E-03
51GO:0018026: peptidyl-lysine monomethylation1.40E-03
52GO:0010569: regulation of double-strand break repair via homologous recombination1.40E-03
53GO:0071497: cellular response to freezing1.40E-03
54GO:0009662: etioplast organization1.40E-03
55GO:1900033: negative regulation of trichome patterning1.40E-03
56GO:0010434: bract formation1.40E-03
57GO:1904143: positive regulation of carotenoid biosynthetic process1.40E-03
58GO:0080009: mRNA methylation1.40E-03
59GO:0009786: regulation of asymmetric cell division1.40E-03
60GO:0048439: flower morphogenesis1.40E-03
61GO:0006529: asparagine biosynthetic process1.40E-03
62GO:2000123: positive regulation of stomatal complex development1.40E-03
63GO:0009733: response to auxin1.53E-03
64GO:0031425: chloroplast RNA processing1.62E-03
65GO:0010583: response to cyclopentenone1.81E-03
66GO:0048281: inflorescence morphogenesis2.30E-03
67GO:0080117: secondary growth2.30E-03
68GO:0090708: specification of plant organ axis polarity2.30E-03
69GO:0006954: inflammatory response2.30E-03
70GO:0090391: granum assembly2.30E-03
71GO:0042780: tRNA 3'-end processing2.30E-03
72GO:0001578: microtubule bundle formation2.30E-03
73GO:0043157: response to cation stress2.30E-03
74GO:0009954: proximal/distal pattern formation2.30E-03
75GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.30E-03
76GO:0045910: negative regulation of DNA recombination2.30E-03
77GO:0045037: protein import into chloroplast stroma2.51E-03
78GO:0010582: floral meristem determinacy2.51E-03
79GO:0009767: photosynthetic electron transport chain2.86E-03
80GO:0071555: cell wall organization3.00E-03
81GO:0010207: photosystem II assembly3.23E-03
82GO:0010411: xyloglucan metabolic process3.31E-03
83GO:0051639: actin filament network formation3.35E-03
84GO:0010239: chloroplast mRNA processing3.35E-03
85GO:0010306: rhamnogalacturonan II biosynthetic process3.35E-03
86GO:0044211: CTP salvage3.35E-03
87GO:0019048: modulation by virus of host morphology or physiology3.35E-03
88GO:0015696: ammonium transport3.35E-03
89GO:0046739: transport of virus in multicellular host3.35E-03
90GO:2000904: regulation of starch metabolic process3.35E-03
91GO:0051289: protein homotetramerization3.35E-03
92GO:0043572: plastid fission3.35E-03
93GO:0031048: chromatin silencing by small RNA3.35E-03
94GO:0010148: transpiration3.35E-03
95GO:1902476: chloride transmembrane transport3.35E-03
96GO:0010071: root meristem specification3.35E-03
97GO:0051513: regulation of monopolar cell growth3.35E-03
98GO:0007231: osmosensory signaling pathway3.35E-03
99GO:0005975: carbohydrate metabolic process3.52E-03
100GO:0070588: calcium ion transmembrane transport3.62E-03
101GO:0048481: plant ovule development3.77E-03
102GO:0000160: phosphorelay signal transduction system4.02E-03
103GO:0009742: brassinosteroid mediated signaling pathway4.07E-03
104GO:0005992: trehalose biosynthetic process4.49E-03
105GO:0051764: actin crosslink formation4.52E-03
106GO:0051322: anaphase4.52E-03
107GO:0030104: water homeostasis4.52E-03
108GO:0033500: carbohydrate homeostasis4.52E-03
109GO:0072488: ammonium transmembrane transport4.52E-03
110GO:0046656: folic acid biosynthetic process4.52E-03
111GO:0006021: inositol biosynthetic process4.52E-03
112GO:0051567: histone H3-K9 methylation4.52E-03
113GO:0044206: UMP salvage4.52E-03
114GO:1901141: regulation of lignin biosynthetic process4.52E-03
115GO:0006479: protein methylation4.52E-03
116GO:0048629: trichome patterning4.52E-03
117GO:0051302: regulation of cell division4.96E-03
118GO:0006418: tRNA aminoacylation for protein translation4.96E-03
119GO:0006306: DNA methylation5.46E-03
120GO:0016998: cell wall macromolecule catabolic process5.46E-03
121GO:0010158: abaxial cell fate specification5.80E-03
122GO:0032876: negative regulation of DNA endoreduplication5.80E-03
123GO:0030308: negative regulation of cell growth5.80E-03
124GO:0010375: stomatal complex patterning5.80E-03
125GO:0010236: plastoquinone biosynthetic process5.80E-03
126GO:0048497: maintenance of floral organ identity5.80E-03
127GO:0006544: glycine metabolic process5.80E-03
128GO:0009107: lipoate biosynthetic process5.80E-03
129GO:1902183: regulation of shoot apical meristem development5.80E-03
130GO:0016123: xanthophyll biosynthetic process5.80E-03
131GO:0010082: regulation of root meristem growth6.53E-03
132GO:0001944: vasculature development6.53E-03
133GO:0009790: embryo development6.66E-03
134GO:0009913: epidermal cell differentiation7.20E-03
135GO:0006655: phosphatidylglycerol biosynthetic process7.20E-03
136GO:0048831: regulation of shoot system development7.20E-03
137GO:0016554: cytidine to uridine editing7.20E-03
138GO:0010315: auxin efflux7.20E-03
139GO:0016458: gene silencing7.20E-03
140GO:0006206: pyrimidine nucleobase metabolic process7.20E-03
141GO:0018258: protein O-linked glycosylation via hydroxyproline7.20E-03
142GO:0006563: L-serine metabolic process7.20E-03
143GO:0009228: thiamine biosynthetic process7.20E-03
144GO:0010405: arabinogalactan protein metabolic process7.20E-03
145GO:0009959: negative gravitropism7.20E-03
146GO:0042546: cell wall biogenesis7.45E-03
147GO:0040008: regulation of growth8.01E-03
148GO:0042372: phylloquinone biosynthetic process8.71E-03
149GO:0010067: procambium histogenesis8.71E-03
150GO:0009942: longitudinal axis specification8.71E-03
151GO:0048509: regulation of meristem development8.71E-03
152GO:0046654: tetrahydrofolate biosynthetic process8.71E-03
153GO:0030488: tRNA methylation8.71E-03
154GO:1901259: chloroplast rRNA processing8.71E-03
155GO:2000037: regulation of stomatal complex patterning8.71E-03
156GO:2000067: regulation of root morphogenesis8.71E-03
157GO:0048868: pollen tube development9.00E-03
158GO:0006342: chromatin silencing9.00E-03
159GO:0009741: response to brassinosteroid9.00E-03
160GO:0009664: plant-type cell wall organization9.48E-03
161GO:0048544: recognition of pollen9.70E-03
162GO:0009646: response to absence of light9.70E-03
163GO:0048528: post-embryonic root development1.03E-02
164GO:0009772: photosynthetic electron transport in photosystem II1.03E-02
165GO:0006821: chloride transport1.03E-02
166GO:0070370: cellular heat acclimation1.03E-02
167GO:0010050: vegetative phase change1.03E-02
168GO:0010444: guard mother cell differentiation1.03E-02
169GO:0009396: folic acid-containing compound biosynthetic process1.03E-02
170GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.03E-02
171GO:0009610: response to symbiotic fungus1.03E-02
172GO:0006955: immune response1.03E-02
173GO:0009736: cytokinin-activated signaling pathway1.04E-02
174GO:0007166: cell surface receptor signaling pathway1.05E-02
175GO:0032502: developmental process1.19E-02
176GO:0009630: gravitropism1.19E-02
177GO:0048564: photosystem I assembly1.20E-02
178GO:0001522: pseudouridine synthesis1.20E-02
179GO:0009850: auxin metabolic process1.20E-02
180GO:0009787: regulation of abscisic acid-activated signaling pathway1.20E-02
181GO:0030162: regulation of proteolysis1.20E-02
182GO:0048766: root hair initiation1.20E-02
183GO:0055075: potassium ion homeostasis1.20E-02
184GO:0070413: trehalose metabolism in response to stress1.20E-02
185GO:0000105: histidine biosynthetic process1.20E-02
186GO:0009828: plant-type cell wall loosening1.36E-02
187GO:0001558: regulation of cell growth1.38E-02
188GO:0010052: guard cell differentiation1.38E-02
189GO:0009827: plant-type cell wall modification1.38E-02
190GO:0010497: plasmodesmata-mediated intercellular transport1.38E-02
191GO:0048364: root development1.45E-02
192GO:0051607: defense response to virus1.53E-02
193GO:0009051: pentose-phosphate shunt, oxidative branch1.57E-02
194GO:2000024: regulation of leaf development1.57E-02
195GO:0042761: very long-chain fatty acid biosynthetic process1.77E-02
196GO:0009638: phototropism1.77E-02
197GO:2000280: regulation of root development1.77E-02
198GO:0035999: tetrahydrofolate interconversion1.77E-02
199GO:1900865: chloroplast RNA modification1.77E-02
200GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.77E-02
201GO:0030422: production of siRNA involved in RNA interference1.98E-02
202GO:0048829: root cap development1.98E-02
203GO:0045036: protein targeting to chloroplast1.98E-02
204GO:0009641: shade avoidance1.98E-02
205GO:0006298: mismatch repair1.98E-02
206GO:0006949: syncytium formation1.98E-02
207GO:0006259: DNA metabolic process1.98E-02
208GO:0006265: DNA topological change2.20E-02
209GO:0009089: lysine biosynthetic process via diaminopimelate2.20E-02
210GO:0006816: calcium ion transport2.20E-02
211GO:0009773: photosynthetic electron transport in photosystem I2.20E-02
212GO:0048229: gametophyte development2.20E-02
213GO:0010015: root morphogenesis2.20E-02
214GO:0080167: response to karrikin2.30E-02
215GO:0009058: biosynthetic process2.32E-02
216GO:0008361: regulation of cell size2.42E-02
217GO:0006790: sulfur compound metabolic process2.42E-02
218GO:0016024: CDP-diacylglycerol biosynthetic process2.42E-02
219GO:0010628: positive regulation of gene expression2.65E-02
220GO:0006006: glucose metabolic process2.65E-02
221GO:0009785: blue light signaling pathway2.65E-02
222GO:0009691: cytokinin biosynthetic process2.65E-02
223GO:0050826: response to freezing2.65E-02
224GO:0010075: regulation of meristem growth2.65E-02
225GO:0016310: phosphorylation2.78E-02
226GO:0006541: glutamine metabolic process2.89E-02
227GO:0010020: chloroplast fission2.89E-02
228GO:0010223: secondary shoot formation2.89E-02
229GO:0009934: regulation of meristem structural organization2.89E-02
230GO:0090351: seedling development3.13E-02
231GO:0046854: phosphatidylinositol phosphorylation3.13E-02
232GO:0006071: glycerol metabolic process3.39E-02
233GO:0006833: water transport3.39E-02
234GO:0080147: root hair cell development3.64E-02
235GO:0051017: actin filament bundle assembly3.64E-02
236GO:0009739: response to gibberellin3.73E-02
237GO:0019953: sexual reproduction3.91E-02
238GO:0006825: copper ion transport3.91E-02
239GO:0006334: nucleosome assembly4.18E-02
240GO:0031348: negative regulation of defense response4.46E-02
241GO:0006730: one-carbon metabolic process4.46E-02
242GO:0016567: protein ubiquitination4.57E-02
243GO:0071215: cellular response to abscisic acid stimulus4.74E-02
244GO:0010227: floral organ abscission4.74E-02
245GO:0051603: proteolysis involved in cellular protein catabolic process4.83E-02
RankGO TermAdjusted P value
1GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
2GO:0047661: amino-acid racemase activity0.00E+00
3GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
4GO:0004056: argininosuccinate lyase activity0.00E+00
5GO:0004401: histidinol-phosphatase activity0.00E+00
6GO:0070009: serine-type aminopeptidase activity0.00E+00
7GO:0052834: inositol monophosphate phosphatase activity0.00E+00
8GO:0004674: protein serine/threonine kinase activity7.05E-05
9GO:0001872: (1->3)-beta-D-glucan binding1.24E-04
10GO:0009672: auxin:proton symporter activity1.26E-04
11GO:0019199: transmembrane receptor protein kinase activity2.12E-04
12GO:0010329: auxin efflux transmembrane transporter activity2.89E-04
13GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.26E-04
14GO:0004519: endonuclease activity4.48E-04
15GO:0005227: calcium activated cation channel activity6.48E-04
16GO:0016274: protein-arginine N-methyltransferase activity6.48E-04
17GO:0042834: peptidoglycan binding6.48E-04
18GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.48E-04
19GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.48E-04
20GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.48E-04
21GO:0004156: dihydropteroate synthase activity6.48E-04
22GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity6.48E-04
23GO:0005290: L-histidine transmembrane transporter activity6.48E-04
24GO:0004008: copper-exporting ATPase activity6.48E-04
25GO:0004071: aspartate-ammonia ligase activity6.48E-04
26GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.48E-04
27GO:0004830: tryptophan-tRNA ligase activity6.48E-04
28GO:0010285: L,L-diaminopimelate aminotransferase activity6.48E-04
29GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.48E-04
30GO:0052381: tRNA dimethylallyltransferase activity6.48E-04
31GO:0010347: L-galactose-1-phosphate phosphatase activity6.48E-04
32GO:0016301: kinase activity6.99E-04
33GO:0052832: inositol monophosphate 3-phosphatase activity1.40E-03
34GO:0008934: inositol monophosphate 1-phosphatase activity1.40E-03
35GO:0052833: inositol monophosphate 4-phosphatase activity1.40E-03
36GO:0000064: L-ornithine transmembrane transporter activity1.40E-03
37GO:0015929: hexosaminidase activity1.40E-03
38GO:0004563: beta-N-acetylhexosaminidase activity1.40E-03
39GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.40E-03
40GO:0017118: lipoyltransferase activity1.40E-03
41GO:0009884: cytokinin receptor activity1.40E-03
42GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.40E-03
43GO:0016415: octanoyltransferase activity1.40E-03
44GO:0016762: xyloglucan:xyloglucosyl transferase activity1.67E-03
45GO:0004805: trehalose-phosphatase activity1.89E-03
46GO:0070330: aromatase activity2.30E-03
47GO:0032549: ribonucleoside binding2.30E-03
48GO:0017150: tRNA dihydrouridine synthase activity2.30E-03
49GO:0042781: 3'-tRNA processing endoribonuclease activity2.30E-03
50GO:0005034: osmosensor activity2.30E-03
51GO:0070180: large ribosomal subunit rRNA binding2.30E-03
52GO:0005262: calcium channel activity2.86E-03
53GO:0004672: protein kinase activity3.22E-03
54GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.23E-03
55GO:0004650: polygalacturonase activity3.24E-03
56GO:0016798: hydrolase activity, acting on glycosyl bonds3.31E-03
57GO:0015181: arginine transmembrane transporter activity3.35E-03
58GO:0035197: siRNA binding3.35E-03
59GO:0015189: L-lysine transmembrane transporter activity3.35E-03
60GO:0005253: anion channel activity4.52E-03
61GO:0042277: peptide binding4.52E-03
62GO:0046556: alpha-L-arabinofuranosidase activity4.52E-03
63GO:0004659: prenyltransferase activity4.52E-03
64GO:0016279: protein-lysine N-methyltransferase activity4.52E-03
65GO:0004930: G-protein coupled receptor activity4.52E-03
66GO:0004845: uracil phosphoribosyltransferase activity4.52E-03
67GO:0004345: glucose-6-phosphate dehydrogenase activity4.52E-03
68GO:0004372: glycine hydroxymethyltransferase activity5.80E-03
69GO:0004888: transmembrane signaling receptor activity5.80E-03
70GO:0005275: amine transmembrane transporter activity5.80E-03
71GO:0018685: alkane 1-monooxygenase activity5.80E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor5.80E-03
73GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.80E-03
74GO:0008725: DNA-3-methyladenine glycosylase activity5.80E-03
75GO:0005524: ATP binding5.92E-03
76GO:1990714: hydroxyproline O-galactosyltransferase activity7.20E-03
77GO:0008519: ammonium transmembrane transporter activity7.20E-03
78GO:0005247: voltage-gated chloride channel activity7.20E-03
79GO:0030983: mismatched DNA binding7.20E-03
80GO:0004605: phosphatidate cytidylyltransferase activity7.20E-03
81GO:0004812: aminoacyl-tRNA ligase activity7.71E-03
82GO:0004675: transmembrane receptor protein serine/threonine kinase activity7.72E-03
83GO:0008195: phosphatidate phosphatase activity8.71E-03
84GO:0004849: uridine kinase activity8.71E-03
85GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity8.71E-03
86GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.71E-03
87GO:0004656: procollagen-proline 4-dioxygenase activity8.71E-03
88GO:0019900: kinase binding8.71E-03
89GO:0004871: signal transducer activity1.01E-02
90GO:0003723: RNA binding1.08E-02
91GO:0000156: phosphorelay response regulator activity1.27E-02
92GO:0008173: RNA methyltransferase activity1.38E-02
93GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.38E-02
94GO:0005375: copper ion transmembrane transporter activity1.38E-02
95GO:0008889: glycerophosphodiester phosphodiesterase activity1.57E-02
96GO:0030247: polysaccharide binding1.91E-02
97GO:0004673: protein histidine kinase activity1.98E-02
98GO:0004713: protein tyrosine kinase activity1.98E-02
99GO:0005089: Rho guanyl-nucleotide exchange factor activity2.20E-02
100GO:0001054: RNA polymerase I activity2.20E-02
101GO:0004222: metalloendopeptidase activity2.34E-02
102GO:0016829: lyase activity2.40E-02
103GO:0004521: endoribonuclease activity2.42E-02
104GO:0005215: transporter activity2.46E-02
105GO:0004022: alcohol dehydrogenase (NAD) activity2.65E-02
106GO:0004565: beta-galactosidase activity2.65E-02
107GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.65E-02
108GO:0004089: carbonate dehydratase activity2.65E-02
109GO:0031072: heat shock protein binding2.65E-02
110GO:0000155: phosphorelay sensor kinase activity2.65E-02
111GO:0009982: pseudouridine synthase activity2.65E-02
112GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.69E-02
113GO:0042803: protein homodimerization activity3.21E-02
114GO:0004185: serine-type carboxypeptidase activity3.47E-02
115GO:0031418: L-ascorbic acid binding3.64E-02
116GO:0043424: protein histidine kinase binding3.91E-02
117GO:0005345: purine nucleobase transmembrane transporter activity3.91E-02
118GO:0035251: UDP-glucosyltransferase activity4.18E-02
119GO:0004176: ATP-dependent peptidase activity4.18E-02
120GO:0033612: receptor serine/threonine kinase binding4.18E-02
121GO:0008408: 3'-5' exonuclease activity4.18E-02
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Gene type



Gene DE type