Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G08920

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0015843: methylammonium transport0.00E+00
3GO:0046460: neutral lipid biosynthetic process0.00E+00
4GO:0044249: cellular biosynthetic process0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
7GO:0090071: negative regulation of ribosome biogenesis0.00E+00
8GO:1903224: regulation of endodermal cell differentiation0.00E+00
9GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
10GO:0042407: cristae formation0.00E+00
11GO:0090042: tubulin deacetylation0.00E+00
12GO:0045184: establishment of protein localization0.00E+00
13GO:0042793: transcription from plastid promoter1.03E-07
14GO:0009658: chloroplast organization5.31E-07
15GO:0009734: auxin-activated signaling pathway7.29E-07
16GO:0046620: regulation of organ growth4.00E-05
17GO:0009657: plastid organization5.61E-05
18GO:0009451: RNA modification7.04E-05
19GO:0009790: embryo development2.56E-04
20GO:0009733: response to auxin3.33E-04
21GO:0009793: embryo development ending in seed dormancy4.75E-04
22GO:0042026: protein refolding5.01E-04
23GO:0030488: tRNA methylation5.01E-04
24GO:2000021: regulation of ion homeostasis5.80E-04
25GO:0035987: endodermal cell differentiation5.80E-04
26GO:0043609: regulation of carbon utilization5.80E-04
27GO:0006436: tryptophanyl-tRNA aminoacylation5.80E-04
28GO:1902458: positive regulation of stomatal opening5.80E-04
29GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.80E-04
30GO:0006419: alanyl-tRNA aminoacylation5.80E-04
31GO:0000476: maturation of 4.5S rRNA5.80E-04
32GO:0000967: rRNA 5'-end processing5.80E-04
33GO:0070509: calcium ion import5.80E-04
34GO:0042659: regulation of cell fate specification5.80E-04
35GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.80E-04
36GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.80E-04
37GO:0043266: regulation of potassium ion transport5.80E-04
38GO:0030198: extracellular matrix organization5.80E-04
39GO:0006438: valyl-tRNA aminoacylation5.80E-04
40GO:0010480: microsporocyte differentiation5.80E-04
41GO:0090558: plant epidermis development5.80E-04
42GO:0042371: vitamin K biosynthetic process5.80E-04
43GO:0006730: one-carbon metabolic process6.18E-04
44GO:0006400: tRNA modification6.42E-04
45GO:0000105: histidine biosynthetic process7.99E-04
46GO:0006002: fructose 6-phosphate metabolic process9.71E-04
47GO:0009926: auxin polar transport1.06E-03
48GO:0000373: Group II intron splicing1.16E-03
49GO:0042550: photosystem I stabilization1.25E-03
50GO:0001682: tRNA 5'-leader removal1.25E-03
51GO:1903426: regulation of reactive oxygen species biosynthetic process1.25E-03
52GO:0034470: ncRNA processing1.25E-03
53GO:0006420: arginyl-tRNA aminoacylation1.25E-03
54GO:0060359: response to ammonium ion1.25E-03
55GO:0048255: mRNA stabilization1.25E-03
56GO:0018026: peptidyl-lysine monomethylation1.25E-03
57GO:1902326: positive regulation of chlorophyll biosynthetic process1.25E-03
58GO:2000030: regulation of response to red or far red light1.25E-03
59GO:0071497: cellular response to freezing1.25E-03
60GO:0042325: regulation of phosphorylation1.25E-03
61GO:0009220: pyrimidine ribonucleotide biosynthetic process1.25E-03
62GO:0006423: cysteinyl-tRNA aminoacylation1.25E-03
63GO:1904143: positive regulation of carotenoid biosynthetic process1.25E-03
64GO:0040008: regulation of growth1.47E-03
65GO:0009828: plant-type cell wall loosening1.72E-03
66GO:0007275: multicellular organism development1.80E-03
67GO:0006760: folic acid-containing compound metabolic process2.05E-03
68GO:0043157: response to cation stress2.05E-03
69GO:0005977: glycogen metabolic process2.05E-03
70GO:0006954: inflammatory response2.05E-03
71GO:0090708: specification of plant organ axis polarity2.05E-03
72GO:0006000: fructose metabolic process2.05E-03
73GO:0001578: microtubule bundle formation2.05E-03
74GO:0045037: protein import into chloroplast stroma2.12E-03
75GO:0010027: thylakoid membrane organization2.16E-03
76GO:2000012: regulation of auxin polar transport2.41E-03
77GO:0010207: photosystem II assembly2.73E-03
78GO:0010020: chloroplast fission2.73E-03
79GO:0016556: mRNA modification2.98E-03
80GO:0051085: chaperone mediated protein folding requiring cofactor2.98E-03
81GO:0010306: rhamnogalacturonan II biosynthetic process2.98E-03
82GO:0010239: chloroplast mRNA processing2.98E-03
83GO:0015696: ammonium transport2.98E-03
84GO:0046739: transport of virus in multicellular host2.98E-03
85GO:0043572: plastid fission2.98E-03
86GO:0006164: purine nucleotide biosynthetic process2.98E-03
87GO:2001141: regulation of RNA biosynthetic process2.98E-03
88GO:1901141: regulation of lignin biosynthetic process4.02E-03
89GO:0030104: water homeostasis4.02E-03
90GO:0051322: anaphase4.02E-03
91GO:0046656: folic acid biosynthetic process4.02E-03
92GO:0072488: ammonium transmembrane transport4.02E-03
93GO:0006021: inositol biosynthetic process4.02E-03
94GO:0044205: 'de novo' UMP biosynthetic process4.02E-03
95GO:0010021: amylopectin biosynthetic process4.02E-03
96GO:0006418: tRNA aminoacylation for protein translation4.19E-03
97GO:0007005: mitochondrion organization5.04E-03
98GO:0016226: iron-sulfur cluster assembly5.04E-03
99GO:0009107: lipoate biosynthetic process5.16E-03
100GO:0016123: xanthophyll biosynthetic process5.16E-03
101GO:0010158: abaxial cell fate specification5.16E-03
102GO:0009904: chloroplast accumulation movement5.16E-03
103GO:0010236: plastoquinone biosynthetic process5.16E-03
104GO:0045038: protein import into chloroplast thylakoid membrane5.16E-03
105GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.51E-03
106GO:0009959: negative gravitropism6.40E-03
107GO:0006655: phosphatidylglycerol biosynthetic process6.40E-03
108GO:0016554: cytidine to uridine editing6.40E-03
109GO:0050665: hydrogen peroxide biosynthetic process6.40E-03
110GO:0032973: amino acid export6.40E-03
111GO:0009228: thiamine biosynthetic process6.40E-03
112GO:0008033: tRNA processing7.03E-03
113GO:0048868: pollen tube development7.59E-03
114GO:0009664: plant-type cell wall organization7.63E-03
115GO:0009854: oxidative photosynthetic carbon pathway7.73E-03
116GO:0080086: stamen filament development7.73E-03
117GO:2000067: regulation of root morphogenesis7.73E-03
118GO:0042372: phylloquinone biosynthetic process7.73E-03
119GO:0019509: L-methionine salvage from methylthioadenosine7.73E-03
120GO:0006458: 'de novo' protein folding7.73E-03
121GO:0017148: negative regulation of translation7.73E-03
122GO:0009942: longitudinal axis specification7.73E-03
123GO:0046654: tetrahydrofolate biosynthetic process7.73E-03
124GO:0034389: lipid particle organization7.73E-03
125GO:0009903: chloroplast avoidance movement7.73E-03
126GO:1901259: chloroplast rRNA processing7.73E-03
127GO:0015693: magnesium ion transport9.15E-03
128GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process9.15E-03
129GO:0048528: post-embryonic root development9.15E-03
130GO:0007050: cell cycle arrest9.15E-03
131GO:0009772: photosynthetic electron transport in photosystem II9.15E-03
132GO:0043090: amino acid import9.15E-03
133GO:0010444: guard mother cell differentiation9.15E-03
134GO:0010050: vegetative phase change9.15E-03
135GO:0048437: floral organ development9.15E-03
136GO:0010196: nonphotochemical quenching9.15E-03
137GO:0030307: positive regulation of cell growth9.15E-03
138GO:0009416: response to light stimulus9.24E-03
139GO:0009630: gravitropism1.00E-02
140GO:0010583: response to cyclopentenone1.00E-02
141GO:0070413: trehalose metabolism in response to stress1.07E-02
142GO:0031540: regulation of anthocyanin biosynthetic process1.07E-02
143GO:0055075: potassium ion homeostasis1.07E-02
144GO:0009231: riboflavin biosynthetic process1.07E-02
145GO:1901657: glycosyl compound metabolic process1.07E-02
146GO:0006402: mRNA catabolic process1.07E-02
147GO:0048564: photosystem I assembly1.07E-02
148GO:0009850: auxin metabolic process1.07E-02
149GO:0019375: galactolipid biosynthetic process1.07E-02
150GO:2000070: regulation of response to water deprivation1.07E-02
151GO:0006353: DNA-templated transcription, termination1.07E-02
152GO:0010252: auxin homeostasis1.14E-02
153GO:0071482: cellular response to light stimulus1.23E-02
154GO:0006526: arginine biosynthetic process1.23E-02
155GO:0010204: defense response signaling pathway, resistance gene-independent1.23E-02
156GO:0010497: plasmodesmata-mediated intercellular transport1.23E-02
157GO:0007389: pattern specification process1.23E-02
158GO:0000910: cytokinesis1.29E-02
159GO:0080144: amino acid homeostasis1.39E-02
160GO:0006098: pentose-phosphate shunt1.39E-02
161GO:0019432: triglyceride biosynthetic process1.39E-02
162GO:0006974: cellular response to DNA damage stimulus1.53E-02
163GO:0042761: very long-chain fatty acid biosynthetic process1.57E-02
164GO:2000280: regulation of root development1.57E-02
165GO:0009638: phototropism1.57E-02
166GO:0043067: regulation of programmed cell death1.57E-02
167GO:0009098: leucine biosynthetic process1.57E-02
168GO:1900865: chloroplast RNA modification1.57E-02
169GO:0010411: xyloglucan metabolic process1.61E-02
170GO:0045036: protein targeting to chloroplast1.75E-02
171GO:0006949: syncytium formation1.75E-02
172GO:0006259: DNA metabolic process1.75E-02
173GO:0006535: cysteine biosynthetic process from serine1.75E-02
174GO:0010015: root morphogenesis1.94E-02
175GO:0006265: DNA topological change1.94E-02
176GO:0009073: aromatic amino acid family biosynthetic process1.94E-02
177GO:1903507: negative regulation of nucleic acid-templated transcription1.94E-02
178GO:0006879: cellular iron ion homeostasis1.94E-02
179GO:0006352: DNA-templated transcription, initiation1.94E-02
180GO:0048229: gametophyte development1.94E-02
181GO:0010582: floral meristem determinacy2.14E-02
182GO:0006790: sulfur compound metabolic process2.14E-02
183GO:0016024: CDP-diacylglycerol biosynthetic process2.14E-02
184GO:0009637: response to blue light2.27E-02
185GO:0045087: innate immune response2.27E-02
186GO:0009691: cytokinin biosynthetic process2.34E-02
187GO:0010229: inflorescence development2.34E-02
188GO:0050826: response to freezing2.34E-02
189GO:0010075: regulation of meristem growth2.34E-02
190GO:0006094: gluconeogenesis2.34E-02
191GO:0010102: lateral root morphogenesis2.34E-02
192GO:0009785: blue light signaling pathway2.34E-02
193GO:0009934: regulation of meristem structural organization2.56E-02
194GO:0048467: gynoecium development2.56E-02
195GO:0046854: phosphatidylinositol phosphorylation2.77E-02
196GO:0071732: cellular response to nitric oxide2.77E-02
197GO:0090351: seedling development2.77E-02
198GO:0070588: calcium ion transmembrane transport2.77E-02
199GO:0010114: response to red light2.93E-02
200GO:0006071: glycerol metabolic process3.00E-02
201GO:0006833: water transport3.00E-02
202GO:0010025: wax biosynthetic process3.00E-02
203GO:0042023: DNA endoreduplication3.00E-02
204GO:0042546: cell wall biogenesis3.05E-02
205GO:0005992: trehalose biosynthetic process3.23E-02
206GO:0019344: cysteine biosynthetic process3.23E-02
207GO:0009116: nucleoside metabolic process3.23E-02
208GO:0000027: ribosomal large subunit assembly3.23E-02
209GO:0051302: regulation of cell division3.46E-02
210GO:0019953: sexual reproduction3.46E-02
211GO:0016575: histone deacetylation3.46E-02
212GO:0015992: proton transport3.70E-02
213GO:0031408: oxylipin biosynthetic process3.70E-02
214GO:0061077: chaperone-mediated protein folding3.70E-02
215GO:0016998: cell wall macromolecule catabolic process3.70E-02
216GO:0006364: rRNA processing3.94E-02
217GO:0031348: negative regulation of defense response3.95E-02
218GO:0080092: regulation of pollen tube growth3.95E-02
219GO:2000022: regulation of jasmonic acid mediated signaling pathway3.95E-02
220GO:0010082: regulation of root meristem growth4.20E-02
221GO:0071369: cellular response to ethylene stimulus4.20E-02
222GO:0009826: unidimensional cell growth4.31E-02
223GO:0009306: protein secretion4.46E-02
224GO:0042254: ribosome biogenesis4.61E-02
225GO:0006096: glycolytic process4.65E-02
226GO:0016117: carotenoid biosynthetic process4.72E-02
227GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.72E-02
228GO:0006606: protein import into nucleus4.98E-02
229GO:0048653: anther development4.98E-02
230GO:0000226: microtubule cytoskeleton organization4.98E-02
RankGO TermAdjusted P value
1GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
2GO:0004358: glutamate N-acetyltransferase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0005201: extracellular matrix structural constituent0.00E+00
5GO:0003937: IMP cyclohydrolase activity0.00E+00
6GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
7GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
8GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
9GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
10GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
11GO:0043014: alpha-tubulin binding0.00E+00
12GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
13GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
14GO:0051721: protein phosphatase 2A binding0.00E+00
15GO:0042903: tubulin deacetylase activity0.00E+00
16GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
17GO:0004056: argininosuccinate lyase activity0.00E+00
18GO:0004401: histidinol-phosphatase activity0.00E+00
19GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.47E-05
20GO:0004519: endonuclease activity6.45E-05
21GO:0003723: RNA binding3.05E-04
22GO:0004176: ATP-dependent peptidase activity5.49E-04
23GO:0010347: L-galactose-1-phosphate phosphatase activity5.80E-04
24GO:0046480: galactolipid galactosyltransferase activity5.80E-04
25GO:0005227: calcium activated cation channel activity5.80E-04
26GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.80E-04
27GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.80E-04
28GO:0004813: alanine-tRNA ligase activity5.80E-04
29GO:0046481: digalactosyldiacylglycerol synthase activity5.80E-04
30GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity5.80E-04
31GO:0004832: valine-tRNA ligase activity5.80E-04
32GO:0004830: tryptophan-tRNA ligase activity5.80E-04
33GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity5.80E-04
34GO:0052381: tRNA dimethylallyltransferase activity5.80E-04
35GO:0010291: carotene beta-ring hydroxylase activity1.25E-03
36GO:0017118: lipoyltransferase activity1.25E-03
37GO:0003852: 2-isopropylmalate synthase activity1.25E-03
38GO:0004814: arginine-tRNA ligase activity1.25E-03
39GO:0009977: proton motive force dependent protein transmembrane transporter activity1.25E-03
40GO:0016415: octanoyltransferase activity1.25E-03
41GO:0004047: aminomethyltransferase activity1.25E-03
42GO:0102083: 7,8-dihydromonapterin aldolase activity1.25E-03
43GO:0052832: inositol monophosphate 3-phosphatase activity1.25E-03
44GO:0004817: cysteine-tRNA ligase activity1.25E-03
45GO:0019156: isoamylase activity1.25E-03
46GO:0004150: dihydroneopterin aldolase activity1.25E-03
47GO:0008934: inositol monophosphate 1-phosphatase activity1.25E-03
48GO:0052833: inositol monophosphate 4-phosphatase activity1.25E-03
49GO:0044183: protein binding involved in protein folding1.85E-03
50GO:0008237: metallopeptidase activity1.86E-03
51GO:0052692: raffinose alpha-galactosidase activity2.05E-03
52GO:0046524: sucrose-phosphate synthase activity2.05E-03
53GO:0070330: aromatase activity2.05E-03
54GO:0004557: alpha-galactosidase activity2.05E-03
55GO:0016851: magnesium chelatase activity2.98E-03
56GO:0043023: ribosomal large subunit binding2.98E-03
57GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.98E-03
58GO:0001872: (1->3)-beta-D-glucan binding2.98E-03
59GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.98E-03
60GO:0009678: hydrogen-translocating pyrophosphatase activity2.98E-03
61GO:0035250: UDP-galactosyltransferase activity2.98E-03
62GO:0019201: nucleotide kinase activity2.98E-03
63GO:0048487: beta-tubulin binding2.98E-03
64GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.98E-03
65GO:0004659: prenyltransferase activity4.02E-03
66GO:0016279: protein-lysine N-methyltransferase activity4.02E-03
67GO:0001053: plastid sigma factor activity4.02E-03
68GO:0004045: aminoacyl-tRNA hydrolase activity4.02E-03
69GO:0016987: sigma factor activity4.02E-03
70GO:0008891: glycolate oxidase activity4.02E-03
71GO:0019843: rRNA binding4.05E-03
72GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.16E-03
73GO:0045300: acyl-[acyl-carrier-protein] desaturase activity5.16E-03
74GO:0005275: amine transmembrane transporter activity5.16E-03
75GO:0018685: alkane 1-monooxygenase activity5.16E-03
76GO:0016773: phosphotransferase activity, alcohol group as acceptor5.16E-03
77GO:0043621: protein self-association6.31E-03
78GO:0008519: ammonium transmembrane transporter activity6.40E-03
79GO:2001070: starch binding6.40E-03
80GO:0004605: phosphatidate cytidylyltransferase activity6.40E-03
81GO:0080030: methyl indole-3-acetate esterase activity6.40E-03
82GO:0004332: fructose-bisphosphate aldolase activity6.40E-03
83GO:0004526: ribonuclease P activity6.40E-03
84GO:0004556: alpha-amylase activity6.40E-03
85GO:0004812: aminoacyl-tRNA ligase activity6.50E-03
86GO:0004124: cysteine synthase activity7.73E-03
87GO:0008195: phosphatidate phosphatase activity7.73E-03
88GO:0004017: adenylate kinase activity7.73E-03
89GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity7.73E-03
90GO:0004144: diacylglycerol O-acyltransferase activity7.73E-03
91GO:0004427: inorganic diphosphatase activity9.15E-03
92GO:0003872: 6-phosphofructokinase activity9.15E-03
93GO:0016762: xyloglucan:xyloglucosyl transferase activity9.39E-03
94GO:0043022: ribosome binding1.07E-02
95GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.23E-02
96GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.23E-02
97GO:0016597: amino acid binding1.29E-02
98GO:0009672: auxin:proton symporter activity1.57E-02
99GO:0016798: hydrolase activity, acting on glycosyl bonds1.61E-02
100GO:0102483: scopolin beta-glucosidase activity1.61E-02
101GO:0004805: trehalose-phosphatase activity1.75E-02
102GO:0005089: Rho guanyl-nucleotide exchange factor activity1.94E-02
103GO:0004222: metalloendopeptidase activity1.97E-02
104GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.07E-02
105GO:0000049: tRNA binding2.14E-02
106GO:0004089: carbonate dehydratase activity2.34E-02
107GO:0015095: magnesium ion transmembrane transporter activity2.34E-02
108GO:0005262: calcium channel activity2.34E-02
109GO:0019888: protein phosphatase regulator activity2.34E-02
110GO:0004565: beta-galactosidase activity2.34E-02
111GO:0010329: auxin efflux transmembrane transporter activity2.34E-02
112GO:0003993: acid phosphatase activity2.37E-02
113GO:0005525: GTP binding2.40E-02
114GO:0008422: beta-glucosidase activity2.48E-02
115GO:0008266: poly(U) RNA binding2.56E-02
116GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.00E-02
117GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.00E-02
118GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.00E-02
119GO:0051536: iron-sulfur cluster binding3.23E-02
120GO:0004407: histone deacetylase activity3.23E-02
121GO:0005528: FK506 binding3.23E-02
122GO:0003714: transcription corepressor activity3.23E-02
123GO:0008408: 3'-5' exonuclease activity3.70E-02
124GO:0033612: receptor serine/threonine kinase binding3.70E-02
125GO:0003964: RNA-directed DNA polymerase activity3.70E-02
126GO:0004707: MAP kinase activity3.70E-02
127GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.23E-02
128GO:0015171: amino acid transmembrane transporter activity4.36E-02
129GO:0047134: protein-disulfide reductase activity4.72E-02
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Gene type



Gene DE type