GO Enrichment Analysis of Co-expressed Genes with
AT3G08660
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009606: tropism | 0.00E+00 |
| 2 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 3 | GO:0046719: regulation by virus of viral protein levels in host cell | 0.00E+00 |
| 4 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 5 | GO:0070455: positive regulation of heme biosynthetic process | 0.00E+00 |
| 6 | GO:0009926: auxin polar transport | 2.33E-05 |
| 7 | GO:0042793: transcription from plastid promoter | 3.28E-05 |
| 8 | GO:0009734: auxin-activated signaling pathway | 5.07E-05 |
| 9 | GO:0042255: ribosome assembly | 8.08E-05 |
| 10 | GO:0046620: regulation of organ growth | 8.08E-05 |
| 11 | GO:0006353: DNA-templated transcription, termination | 8.08E-05 |
| 12 | GO:0034757: negative regulation of iron ion transport | 1.25E-04 |
| 13 | GO:0080112: seed growth | 1.25E-04 |
| 14 | GO:1903866: palisade mesophyll development | 1.25E-04 |
| 15 | GO:1905039: carboxylic acid transmembrane transport | 1.25E-04 |
| 16 | GO:1905200: gibberellic acid transmembrane transport | 1.25E-04 |
| 17 | GO:0009767: photosynthetic electron transport chain | 2.77E-04 |
| 18 | GO:0010271: regulation of chlorophyll catabolic process | 2.90E-04 |
| 19 | GO:0071497: cellular response to freezing | 2.90E-04 |
| 20 | GO:0099402: plant organ development | 2.90E-04 |
| 21 | GO:1900033: negative regulation of trichome patterning | 2.90E-04 |
| 22 | GO:0080009: mRNA methylation | 2.90E-04 |
| 23 | GO:0006597: spermine biosynthetic process | 2.90E-04 |
| 24 | GO:0010569: regulation of double-strand break repair via homologous recombination | 2.90E-04 |
| 25 | GO:0090391: granum assembly | 4.78E-04 |
| 26 | GO:0006760: folic acid-containing compound metabolic process | 4.78E-04 |
| 27 | GO:0006557: S-adenosylmethioninamine biosynthetic process | 4.78E-04 |
| 28 | GO:0080117: secondary growth | 4.78E-04 |
| 29 | GO:0009733: response to auxin | 5.51E-04 |
| 30 | GO:1901332: negative regulation of lateral root development | 6.85E-04 |
| 31 | GO:0009800: cinnamic acid biosynthetic process | 6.85E-04 |
| 32 | GO:0033014: tetrapyrrole biosynthetic process | 6.85E-04 |
| 33 | GO:0046656: folic acid biosynthetic process | 9.08E-04 |
| 34 | GO:0006346: methylation-dependent chromatin silencing | 9.08E-04 |
| 35 | GO:1901141: regulation of lignin biosynthetic process | 9.08E-04 |
| 36 | GO:0048629: trichome patterning | 9.08E-04 |
| 37 | GO:0008295: spermidine biosynthetic process | 9.08E-04 |
| 38 | GO:0016123: xanthophyll biosynthetic process | 1.15E-03 |
| 39 | GO:0010252: auxin homeostasis | 1.25E-03 |
| 40 | GO:0048831: regulation of shoot system development | 1.41E-03 |
| 41 | GO:0010315: auxin efflux | 1.41E-03 |
| 42 | GO:0006559: L-phenylalanine catabolic process | 1.41E-03 |
| 43 | GO:1902456: regulation of stomatal opening | 1.41E-03 |
| 44 | GO:0048509: regulation of meristem development | 1.68E-03 |
| 45 | GO:0046654: tetrahydrofolate biosynthetic process | 1.68E-03 |
| 46 | GO:0071470: cellular response to osmotic stress | 1.68E-03 |
| 47 | GO:0008380: RNA splicing | 1.93E-03 |
| 48 | GO:0048767: root hair elongation | 2.02E-03 |
| 49 | GO:0000105: histidine biosynthetic process | 2.29E-03 |
| 50 | GO:0052543: callose deposition in cell wall | 2.29E-03 |
| 51 | GO:0048766: root hair initiation | 2.29E-03 |
| 52 | GO:0007389: pattern specification process | 2.61E-03 |
| 53 | GO:0009658: chloroplast organization | 2.67E-03 |
| 54 | GO:0030001: metal ion transport | 2.76E-03 |
| 55 | GO:0006783: heme biosynthetic process | 2.95E-03 |
| 56 | GO:0042761: very long-chain fatty acid biosynthetic process | 3.31E-03 |
| 57 | GO:0048829: root cap development | 3.68E-03 |
| 58 | GO:0031627: telomeric loop formation | 3.68E-03 |
| 59 | GO:0010629: negative regulation of gene expression | 3.68E-03 |
| 60 | GO:0015770: sucrose transport | 4.06E-03 |
| 61 | GO:0010105: negative regulation of ethylene-activated signaling pathway | 4.45E-03 |
| 62 | GO:0000266: mitochondrial fission | 4.45E-03 |
| 63 | GO:0010588: cotyledon vascular tissue pattern formation | 4.86E-03 |
| 64 | GO:0048367: shoot system development | 5.11E-03 |
| 65 | GO:0010540: basipetal auxin transport | 5.28E-03 |
| 66 | GO:0010143: cutin biosynthetic process | 5.28E-03 |
| 67 | GO:0080188: RNA-directed DNA methylation | 5.71E-03 |
| 68 | GO:0009901: anther dehiscence | 5.71E-03 |
| 69 | GO:0006071: glycerol metabolic process | 6.15E-03 |
| 70 | GO:0080147: root hair cell development | 6.61E-03 |
| 71 | GO:0010073: meristem maintenance | 7.08E-03 |
| 72 | GO:0006825: copper ion transport | 7.08E-03 |
| 73 | GO:0003333: amino acid transmembrane transport | 7.56E-03 |
| 74 | GO:0006306: DNA methylation | 7.56E-03 |
| 75 | GO:0010082: regulation of root meristem growth | 8.56E-03 |
| 76 | GO:0071215: cellular response to abscisic acid stimulus | 8.56E-03 |
| 77 | GO:0070417: cellular response to cold | 9.60E-03 |
| 78 | GO:0040008: regulation of growth | 9.83E-03 |
| 79 | GO:0010087: phloem or xylem histogenesis | 1.01E-02 |
| 80 | GO:0010118: stomatal movement | 1.01E-02 |
| 81 | GO:0009451: RNA modification | 1.05E-02 |
| 82 | GO:0009958: positive gravitropism | 1.07E-02 |
| 83 | GO:0007018: microtubule-based movement | 1.12E-02 |
| 84 | GO:0009791: post-embryonic development | 1.18E-02 |
| 85 | GO:0080156: mitochondrial mRNA modification | 1.24E-02 |
| 86 | GO:0019761: glucosinolate biosynthetic process | 1.30E-02 |
| 87 | GO:0032502: developmental process | 1.30E-02 |
| 88 | GO:0009630: gravitropism | 1.30E-02 |
| 89 | GO:0031047: gene silencing by RNA | 1.30E-02 |
| 90 | GO:0001666: response to hypoxia | 1.61E-02 |
| 91 | GO:0010027: thylakoid membrane organization | 1.61E-02 |
| 92 | GO:0010029: regulation of seed germination | 1.67E-02 |
| 93 | GO:0015995: chlorophyll biosynthetic process | 1.81E-02 |
| 94 | GO:0009832: plant-type cell wall biogenesis | 2.01E-02 |
| 95 | GO:0000160: phosphorelay signal transduction system | 2.01E-02 |
| 96 | GO:0010311: lateral root formation | 2.01E-02 |
| 97 | GO:0009631: cold acclimation | 2.15E-02 |
| 98 | GO:0044550: secondary metabolite biosynthetic process | 2.16E-02 |
| 99 | GO:0006865: amino acid transport | 2.23E-02 |
| 100 | GO:0034599: cellular response to oxidative stress | 2.37E-02 |
| 101 | GO:0006839: mitochondrial transport | 2.52E-02 |
| 102 | GO:0016042: lipid catabolic process | 2.85E-02 |
| 103 | GO:0009751: response to salicylic acid | 2.89E-02 |
| 104 | GO:0009636: response to toxic substance | 2.99E-02 |
| 105 | GO:0048364: root development | 3.06E-02 |
| 106 | GO:0009736: cytokinin-activated signaling pathway | 3.40E-02 |
| 107 | GO:0009909: regulation of flower development | 3.66E-02 |
| 108 | GO:0006357: regulation of transcription from RNA polymerase II promoter | 3.87E-02 |
| 109 | GO:0009626: plant-type hypersensitive response | 4.01E-02 |
| 110 | GO:0016569: covalent chromatin modification | 4.19E-02 |
| 111 | GO:0009624: response to nematode | 4.37E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071633: dihydroceramidase activity | 0.00E+00 |
| 2 | GO:0003727: single-stranded RNA binding | 3.43E-05 |
| 3 | GO:0004016: adenylate cyclase activity | 1.25E-04 |
| 4 | GO:0004400: histidinol-phosphate transaminase activity | 1.25E-04 |
| 5 | GO:1905201: gibberellin transmembrane transporter activity | 1.25E-04 |
| 6 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.25E-04 |
| 7 | GO:0009672: auxin:proton symporter activity | 1.51E-04 |
| 8 | GO:0010329: auxin efflux transmembrane transporter activity | 2.77E-04 |
| 9 | GO:0004150: dihydroneopterin aldolase activity | 2.90E-04 |
| 10 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 2.90E-04 |
| 11 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 2.90E-04 |
| 12 | GO:0008805: carbon-monoxide oxygenase activity | 2.90E-04 |
| 13 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 2.90E-04 |
| 14 | GO:0009884: cytokinin receptor activity | 2.90E-04 |
| 15 | GO:0016805: dipeptidase activity | 4.78E-04 |
| 16 | GO:0005034: osmosensor activity | 4.78E-04 |
| 17 | GO:0004014: adenosylmethionine decarboxylase activity | 4.78E-04 |
| 18 | GO:0052722: fatty acid in-chain hydroxylase activity | 4.78E-04 |
| 19 | GO:0045548: phenylalanine ammonia-lyase activity | 4.78E-04 |
| 20 | GO:0043495: protein anchor | 9.08E-04 |
| 21 | GO:0004518: nuclease activity | 1.11E-03 |
| 22 | GO:0004523: RNA-DNA hybrid ribonuclease activity | 1.15E-03 |
| 23 | GO:0019900: kinase binding | 1.68E-03 |
| 24 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.68E-03 |
| 25 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 2.95E-03 |
| 26 | GO:0004673: protein histidine kinase activity | 3.68E-03 |
| 27 | GO:0003691: double-stranded telomeric DNA binding | 4.06E-03 |
| 28 | GO:0008515: sucrose transmembrane transporter activity | 4.06E-03 |
| 29 | GO:0003690: double-stranded DNA binding | 4.34E-03 |
| 30 | GO:0004022: alcohol dehydrogenase (NAD) activity | 4.86E-03 |
| 31 | GO:0000155: phosphorelay sensor kinase activity | 4.86E-03 |
| 32 | GO:0009982: pseudouridine synthase activity | 4.86E-03 |
| 33 | GO:0003725: double-stranded RNA binding | 4.86E-03 |
| 34 | GO:0051119: sugar transmembrane transporter activity | 5.71E-03 |
| 35 | GO:0043424: protein histidine kinase binding | 7.08E-03 |
| 36 | GO:0019843: rRNA binding | 7.46E-03 |
| 37 | GO:0004707: MAP kinase activity | 7.56E-03 |
| 38 | GO:0030570: pectate lyase activity | 8.56E-03 |
| 39 | GO:0005215: transporter activity | 8.73E-03 |
| 40 | GO:0001085: RNA polymerase II transcription factor binding | 1.07E-02 |
| 41 | GO:0010181: FMN binding | 1.12E-02 |
| 42 | GO:0005200: structural constituent of cytoskeleton | 1.48E-02 |
| 43 | GO:0008237: metallopeptidase activity | 1.48E-02 |
| 44 | GO:0051213: dioxygenase activity | 1.61E-02 |
| 45 | GO:0016788: hydrolase activity, acting on ester bonds | 1.63E-02 |
| 46 | GO:0003682: chromatin binding | 1.69E-02 |
| 47 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 2.15E-02 |
| 48 | GO:0052689: carboxylic ester hydrolase activity | 2.19E-02 |
| 49 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.30E-02 |
| 50 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 2.38E-02 |
| 51 | GO:0003723: RNA binding | 2.43E-02 |
| 52 | GO:0042393: histone binding | 2.52E-02 |
| 53 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.57E-02 |
| 54 | GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding | 2.65E-02 |
| 55 | GO:0043621: protein self-association | 2.91E-02 |
| 56 | GO:0015293: symporter activity | 2.99E-02 |
| 57 | GO:0004519: endonuclease activity | 3.19E-02 |
| 58 | GO:0003777: microtubule motor activity | 3.66E-02 |
| 59 | GO:0015171: amino acid transmembrane transporter activity | 3.66E-02 |
| 60 | GO:0016491: oxidoreductase activity | 4.07E-02 |