GO Enrichment Analysis of Co-expressed Genes with
AT3G08600
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043488: regulation of mRNA stability | 0.00E+00 |
| 2 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 3 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 4 | GO:0010422: regulation of brassinosteroid biosynthetic process | 0.00E+00 |
| 5 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 6 | GO:0009157: deoxyribonucleoside monophosphate biosynthetic process | 0.00E+00 |
| 7 | GO:0007037: vacuolar phosphate transport | 0.00E+00 |
| 8 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 9 | GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) | 0.00E+00 |
| 10 | GO:0031116: positive regulation of microtubule polymerization | 0.00E+00 |
| 11 | GO:0010068: protoderm histogenesis | 0.00E+00 |
| 12 | GO:0007172: signal complex assembly | 0.00E+00 |
| 13 | GO:0006468: protein phosphorylation | 9.89E-08 |
| 14 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.02E-07 |
| 15 | GO:0009067: aspartate family amino acid biosynthetic process | 1.41E-05 |
| 16 | GO:0009099: valine biosynthetic process | 8.69E-05 |
| 17 | GO:0009088: threonine biosynthetic process | 8.69E-05 |
| 18 | GO:0009082: branched-chain amino acid biosynthetic process | 8.69E-05 |
| 19 | GO:0009097: isoleucine biosynthetic process | 1.85E-04 |
| 20 | GO:0006659: phosphatidylserine biosynthetic process | 1.86E-04 |
| 21 | GO:0006264: mitochondrial DNA replication | 1.86E-04 |
| 22 | GO:0033259: plastid DNA replication | 1.86E-04 |
| 23 | GO:0048508: embryonic meristem development | 1.86E-04 |
| 24 | GO:0005991: trehalose metabolic process | 1.86E-04 |
| 25 | GO:0010450: inflorescence meristem growth | 1.86E-04 |
| 26 | GO:0006747: FAD biosynthetic process | 1.86E-04 |
| 27 | GO:0051171: regulation of nitrogen compound metabolic process | 1.86E-04 |
| 28 | GO:0009090: homoserine biosynthetic process | 1.86E-04 |
| 29 | GO:0071028: nuclear mRNA surveillance | 1.86E-04 |
| 30 | GO:0009638: phototropism | 2.69E-04 |
| 31 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.66E-04 |
| 32 | GO:0007154: cell communication | 4.19E-04 |
| 33 | GO:0031125: rRNA 3'-end processing | 4.19E-04 |
| 34 | GO:0071051: polyadenylation-dependent snoRNA 3'-end processing | 4.19E-04 |
| 35 | GO:0006420: arginyl-tRNA aminoacylation | 4.19E-04 |
| 36 | GO:0034475: U4 snRNA 3'-end processing | 4.19E-04 |
| 37 | GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole | 4.19E-04 |
| 38 | GO:0009945: radial axis specification | 4.19E-04 |
| 39 | GO:0007166: cell surface receptor signaling pathway | 6.33E-04 |
| 40 | GO:0001578: microtubule bundle formation | 6.84E-04 |
| 41 | GO:0045165: cell fate commitment | 6.84E-04 |
| 42 | GO:0016075: rRNA catabolic process | 6.84E-04 |
| 43 | GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 6.84E-04 |
| 44 | GO:0051127: positive regulation of actin nucleation | 6.84E-04 |
| 45 | GO:0019419: sulfate reduction | 6.84E-04 |
| 46 | GO:0070475: rRNA base methylation | 6.84E-04 |
| 47 | GO:0010187: negative regulation of seed germination | 7.41E-04 |
| 48 | GO:0005992: trehalose biosynthetic process | 7.41E-04 |
| 49 | GO:0019344: cysteine biosynthetic process | 7.41E-04 |
| 50 | GO:0016310: phosphorylation | 7.80E-04 |
| 51 | GO:0007231: osmosensory signaling pathway | 9.77E-04 |
| 52 | GO:0051639: actin filament network formation | 9.77E-04 |
| 53 | GO:0048645: animal organ formation | 9.77E-04 |
| 54 | GO:0006164: purine nucleotide biosynthetic process | 9.77E-04 |
| 55 | GO:0010255: glucose mediated signaling pathway | 9.77E-04 |
| 56 | GO:0048367: shoot system development | 1.28E-03 |
| 57 | GO:0009165: nucleotide biosynthetic process | 1.29E-03 |
| 58 | GO:0051764: actin crosslink formation | 1.29E-03 |
| 59 | GO:0051322: anaphase | 1.29E-03 |
| 60 | GO:0033500: carbohydrate homeostasis | 1.29E-03 |
| 61 | GO:0007020: microtubule nucleation | 1.29E-03 |
| 62 | GO:0006021: inositol biosynthetic process | 1.29E-03 |
| 63 | GO:0006508: proteolysis | 1.33E-03 |
| 64 | GO:0009740: gibberellic acid mediated signaling pathway | 1.43E-03 |
| 65 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.65E-03 |
| 66 | GO:0009851: auxin biosynthetic process | 1.65E-03 |
| 67 | GO:1902183: regulation of shoot apical meristem development | 1.65E-03 |
| 68 | GO:0010158: abaxial cell fate specification | 1.65E-03 |
| 69 | GO:0016131: brassinosteroid metabolic process | 1.65E-03 |
| 70 | GO:0046785: microtubule polymerization | 1.65E-03 |
| 71 | GO:0009635: response to herbicide | 2.03E-03 |
| 72 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 2.03E-03 |
| 73 | GO:0009959: negative gravitropism | 2.03E-03 |
| 74 | GO:0045962: positive regulation of development, heterochronic | 2.03E-03 |
| 75 | GO:0006139: nucleobase-containing compound metabolic process | 2.03E-03 |
| 76 | GO:0009228: thiamine biosynthetic process | 2.03E-03 |
| 77 | GO:0009942: longitudinal axis specification | 2.43E-03 |
| 78 | GO:0009648: photoperiodism | 2.43E-03 |
| 79 | GO:0015977: carbon fixation | 2.43E-03 |
| 80 | GO:0042372: phylloquinone biosynthetic process | 2.43E-03 |
| 81 | GO:0010161: red light signaling pathway | 2.87E-03 |
| 82 | GO:0009610: response to symbiotic fungus | 2.87E-03 |
| 83 | GO:0048528: post-embryonic root development | 2.87E-03 |
| 84 | GO:0007623: circadian rhythm | 3.09E-03 |
| 85 | GO:0010078: maintenance of root meristem identity | 3.32E-03 |
| 86 | GO:0009231: riboflavin biosynthetic process | 3.32E-03 |
| 87 | GO:0052543: callose deposition in cell wall | 3.32E-03 |
| 88 | GO:0042255: ribosome assembly | 3.32E-03 |
| 89 | GO:0006353: DNA-templated transcription, termination | 3.32E-03 |
| 90 | GO:0070413: trehalose metabolism in response to stress | 3.32E-03 |
| 91 | GO:0000160: phosphorelay signal transduction system | 3.47E-03 |
| 92 | GO:0010100: negative regulation of photomorphogenesis | 3.80E-03 |
| 93 | GO:0043562: cellular response to nitrogen levels | 3.80E-03 |
| 94 | GO:0009808: lignin metabolic process | 3.80E-03 |
| 95 | GO:0010093: specification of floral organ identity | 3.80E-03 |
| 96 | GO:0010099: regulation of photomorphogenesis | 3.80E-03 |
| 97 | GO:0009827: plant-type cell wall modification | 3.80E-03 |
| 98 | GO:0006783: heme biosynthetic process | 4.30E-03 |
| 99 | GO:0006189: 'de novo' IMP biosynthetic process | 4.30E-03 |
| 100 | GO:0010206: photosystem II repair | 4.30E-03 |
| 101 | GO:2000024: regulation of leaf development | 4.30E-03 |
| 102 | GO:0009098: leucine biosynthetic process | 4.82E-03 |
| 103 | GO:0009086: methionine biosynthetic process | 4.82E-03 |
| 104 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.82E-03 |
| 105 | GO:0031425: chloroplast RNA processing | 4.82E-03 |
| 106 | GO:0000103: sulfate assimilation | 5.36E-03 |
| 107 | GO:0009299: mRNA transcription | 5.36E-03 |
| 108 | GO:0006535: cysteine biosynthetic process from serine | 5.36E-03 |
| 109 | GO:0009658: chloroplast organization | 5.38E-03 |
| 110 | GO:0009684: indoleacetic acid biosynthetic process | 5.92E-03 |
| 111 | GO:0006816: calcium ion transport | 5.92E-03 |
| 112 | GO:0006415: translational termination | 5.92E-03 |
| 113 | GO:0006855: drug transmembrane transport | 6.28E-03 |
| 114 | GO:0010152: pollen maturation | 6.51E-03 |
| 115 | GO:0048366: leaf development | 6.62E-03 |
| 116 | GO:0030036: actin cytoskeleton organization | 7.11E-03 |
| 117 | GO:0009725: response to hormone | 7.11E-03 |
| 118 | GO:0010588: cotyledon vascular tissue pattern formation | 7.11E-03 |
| 119 | GO:0009585: red, far-red light phototransduction | 7.26E-03 |
| 120 | GO:0009736: cytokinin-activated signaling pathway | 7.26E-03 |
| 121 | GO:0046777: protein autophosphorylation | 7.70E-03 |
| 122 | GO:0009934: regulation of meristem structural organization | 7.73E-03 |
| 123 | GO:0048467: gynoecium development | 7.73E-03 |
| 124 | GO:0009933: meristem structural organization | 7.73E-03 |
| 125 | GO:0090351: seedling development | 8.37E-03 |
| 126 | GO:0010030: positive regulation of seed germination | 8.37E-03 |
| 127 | GO:0070588: calcium ion transmembrane transport | 8.37E-03 |
| 128 | GO:0006833: water transport | 9.03E-03 |
| 129 | GO:0051017: actin filament bundle assembly | 9.71E-03 |
| 130 | GO:0009944: polarity specification of adaxial/abaxial axis | 9.71E-03 |
| 131 | GO:0007010: cytoskeleton organization | 9.71E-03 |
| 132 | GO:0010073: meristem maintenance | 1.04E-02 |
| 133 | GO:0043622: cortical microtubule organization | 1.04E-02 |
| 134 | GO:0051260: protein homooligomerization | 1.11E-02 |
| 135 | GO:0010017: red or far-red light signaling pathway | 1.19E-02 |
| 136 | GO:0009686: gibberellin biosynthetic process | 1.26E-02 |
| 137 | GO:0010082: regulation of root meristem growth | 1.26E-02 |
| 138 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.42E-02 |
| 139 | GO:0000271: polysaccharide biosynthetic process | 1.50E-02 |
| 140 | GO:0080022: primary root development | 1.50E-02 |
| 141 | GO:0008033: tRNA processing | 1.50E-02 |
| 142 | GO:0034220: ion transmembrane transport | 1.50E-02 |
| 143 | GO:0010087: phloem or xylem histogenesis | 1.50E-02 |
| 144 | GO:0048653: anther development | 1.50E-02 |
| 145 | GO:0042631: cellular response to water deprivation | 1.50E-02 |
| 146 | GO:0042335: cuticle development | 1.50E-02 |
| 147 | GO:0010182: sugar mediated signaling pathway | 1.58E-02 |
| 148 | GO:0009958: positive gravitropism | 1.58E-02 |
| 149 | GO:0045489: pectin biosynthetic process | 1.58E-02 |
| 150 | GO:0010154: fruit development | 1.58E-02 |
| 151 | GO:0009646: response to absence of light | 1.66E-02 |
| 152 | GO:0040008: regulation of growth | 1.71E-02 |
| 153 | GO:0008654: phospholipid biosynthetic process | 1.75E-02 |
| 154 | GO:0009791: post-embryonic development | 1.75E-02 |
| 155 | GO:0048825: cotyledon development | 1.75E-02 |
| 156 | GO:0045490: pectin catabolic process | 1.79E-02 |
| 157 | GO:0016132: brassinosteroid biosynthetic process | 1.83E-02 |
| 158 | GO:0000302: response to reactive oxygen species | 1.83E-02 |
| 159 | GO:0032502: developmental process | 1.92E-02 |
| 160 | GO:0016032: viral process | 1.92E-02 |
| 161 | GO:0030154: cell differentiation | 1.97E-02 |
| 162 | GO:0030163: protein catabolic process | 2.01E-02 |
| 163 | GO:0010468: regulation of gene expression | 2.14E-02 |
| 164 | GO:0009735: response to cytokinin | 2.14E-02 |
| 165 | GO:0071805: potassium ion transmembrane transport | 2.19E-02 |
| 166 | GO:0051607: defense response to virus | 2.29E-02 |
| 167 | GO:0000910: cytokinesis | 2.29E-02 |
| 168 | GO:0010029: regulation of seed germination | 2.48E-02 |
| 169 | GO:0006974: cellular response to DNA damage stimulus | 2.58E-02 |
| 170 | GO:0048573: photoperiodism, flowering | 2.67E-02 |
| 171 | GO:0015995: chlorophyll biosynthetic process | 2.67E-02 |
| 172 | GO:0009813: flavonoid biosynthetic process | 2.98E-02 |
| 173 | GO:0009832: plant-type cell wall biogenesis | 2.98E-02 |
| 174 | GO:0006499: N-terminal protein myristoylation | 3.08E-02 |
| 175 | GO:0009910: negative regulation of flower development | 3.19E-02 |
| 176 | GO:0048527: lateral root development | 3.19E-02 |
| 177 | GO:0009723: response to ethylene | 3.22E-02 |
| 178 | GO:0006865: amino acid transport | 3.30E-02 |
| 179 | GO:0016051: carbohydrate biosynthetic process | 3.40E-02 |
| 180 | GO:0009853: photorespiration | 3.40E-02 |
| 181 | GO:0006099: tricarboxylic acid cycle | 3.51E-02 |
| 182 | GO:0006839: mitochondrial transport | 3.74E-02 |
| 183 | GO:0006631: fatty acid metabolic process | 3.85E-02 |
| 184 | GO:0051707: response to other organism | 4.08E-02 |
| 185 | GO:0008283: cell proliferation | 4.08E-02 |
| 186 | GO:0009644: response to high light intensity | 4.31E-02 |
| 187 | GO:0008643: carbohydrate transport | 4.31E-02 |
| 188 | GO:0009965: leaf morphogenesis | 4.43E-02 |
| 189 | GO:0006260: DNA replication | 4.67E-02 |
| 190 | GO:0009846: pollen germination | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 2 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 3 | GO:0019136: deoxynucleoside kinase activity | 0.00E+00 |
| 4 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 5 | GO:0052907: 23S rRNA (adenine(1618)-N(6))-methyltransferase activity | 0.00E+00 |
| 6 | GO:0016301: kinase activity | 1.58E-07 |
| 7 | GO:0004674: protein serine/threonine kinase activity | 2.15E-07 |
| 8 | GO:0005524: ATP binding | 3.76E-07 |
| 9 | GO:0004072: aspartate kinase activity | 1.41E-05 |
| 10 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 5.62E-05 |
| 11 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.86E-04 |
| 12 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.86E-04 |
| 13 | GO:0003984: acetolactate synthase activity | 1.86E-04 |
| 14 | GO:0010313: phytochrome binding | 1.86E-04 |
| 15 | GO:0004252: serine-type endopeptidase activity | 3.67E-04 |
| 16 | GO:0050017: L-3-cyanoalanine synthase activity | 4.19E-04 |
| 17 | GO:0043425: bHLH transcription factor binding | 4.19E-04 |
| 18 | GO:0004814: arginine-tRNA ligase activity | 4.19E-04 |
| 19 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 4.19E-04 |
| 20 | GO:0033741: adenylyl-sulfate reductase (glutathione) activity | 4.19E-04 |
| 21 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.19E-04 |
| 22 | GO:0009973: adenylyl-sulfate reductase activity | 4.19E-04 |
| 23 | GO:0003919: FMN adenylyltransferase activity | 4.19E-04 |
| 24 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 4.19E-04 |
| 25 | GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity | 4.19E-04 |
| 26 | GO:0004412: homoserine dehydrogenase activity | 4.19E-04 |
| 27 | GO:0004512: inositol-3-phosphate synthase activity | 4.19E-04 |
| 28 | GO:0070330: aromatase activity | 6.84E-04 |
| 29 | GO:0008964: phosphoenolpyruvate carboxylase activity | 6.84E-04 |
| 30 | GO:0004672: protein kinase activity | 8.12E-04 |
| 31 | GO:0052656: L-isoleucine transaminase activity | 9.77E-04 |
| 32 | GO:0052654: L-leucine transaminase activity | 9.77E-04 |
| 33 | GO:0052655: L-valine transaminase activity | 9.77E-04 |
| 34 | GO:0001872: (1->3)-beta-D-glucan binding | 9.77E-04 |
| 35 | GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 9.77E-04 |
| 36 | GO:0030570: pectate lyase activity | 1.06E-03 |
| 37 | GO:0003727: single-stranded RNA binding | 1.15E-03 |
| 38 | GO:0004737: pyruvate decarboxylase activity | 1.29E-03 |
| 39 | GO:0008409: 5'-3' exonuclease activity | 1.29E-03 |
| 40 | GO:0004084: branched-chain-amino-acid transaminase activity | 1.29E-03 |
| 41 | GO:0016846: carbon-sulfur lyase activity | 1.65E-03 |
| 42 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.65E-03 |
| 43 | GO:0018685: alkane 1-monooxygenase activity | 1.65E-03 |
| 44 | GO:0000156: phosphorelay response regulator activity | 2.01E-03 |
| 45 | GO:0051015: actin filament binding | 2.01E-03 |
| 46 | GO:0030976: thiamine pyrophosphate binding | 2.03E-03 |
| 47 | GO:0016208: AMP binding | 2.03E-03 |
| 48 | GO:0016829: lyase activity | 2.27E-03 |
| 49 | GO:0016597: amino acid binding | 2.40E-03 |
| 50 | GO:0004124: cysteine synthase activity | 2.43E-03 |
| 51 | GO:0003730: mRNA 3'-UTR binding | 2.43E-03 |
| 52 | GO:0030247: polysaccharide binding | 2.99E-03 |
| 53 | GO:0008236: serine-type peptidase activity | 3.15E-03 |
| 54 | GO:0008017: microtubule binding | 3.27E-03 |
| 55 | GO:0103075: indole-3-pyruvate monooxygenase activity | 3.32E-03 |
| 56 | GO:0015238: drug transmembrane transporter activity | 3.47E-03 |
| 57 | GO:0003747: translation release factor activity | 4.30E-03 |
| 58 | GO:0050661: NADP binding | 4.76E-03 |
| 59 | GO:0004805: trehalose-phosphatase activity | 5.36E-03 |
| 60 | GO:0004713: protein tyrosine kinase activity | 5.36E-03 |
| 61 | GO:0005262: calcium channel activity | 7.11E-03 |
| 62 | GO:0000175: 3'-5'-exoribonuclease activity | 7.11E-03 |
| 63 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 7.73E-03 |
| 64 | GO:0003777: microtubule motor activity | 8.04E-03 |
| 65 | GO:0003887: DNA-directed DNA polymerase activity | 9.03E-03 |
| 66 | GO:0005528: FK506 binding | 9.71E-03 |
| 67 | GO:0015079: potassium ion transmembrane transporter activity | 1.04E-02 |
| 68 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.11E-02 |
| 69 | GO:0008408: 3'-5' exonuclease activity | 1.11E-02 |
| 70 | GO:0004176: ATP-dependent peptidase activity | 1.11E-02 |
| 71 | GO:0033612: receptor serine/threonine kinase binding | 1.11E-02 |
| 72 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.19E-02 |
| 73 | GO:0008514: organic anion transmembrane transporter activity | 1.34E-02 |
| 74 | GO:0004499: N,N-dimethylaniline monooxygenase activity | 1.34E-02 |
| 75 | GO:0001085: RNA polymerase II transcription factor binding | 1.58E-02 |
| 76 | GO:0050662: coenzyme binding | 1.66E-02 |
| 77 | GO:0015297: antiporter activity | 1.71E-02 |
| 78 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.01E-02 |
| 79 | GO:0016791: phosphatase activity | 2.10E-02 |
| 80 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.19E-02 |
| 81 | GO:0008237: metallopeptidase activity | 2.19E-02 |
| 82 | GO:0042802: identical protein binding | 2.28E-02 |
| 83 | GO:0015250: water channel activity | 2.38E-02 |
| 84 | GO:0004721: phosphoprotein phosphatase activity | 2.67E-02 |
| 85 | GO:0004222: metalloendopeptidase activity | 3.08E-02 |
| 86 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.19E-02 |
| 87 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.19E-02 |
| 88 | GO:0050660: flavin adenine dinucleotide binding | 3.22E-02 |
| 89 | GO:0003746: translation elongation factor activity | 3.40E-02 |
| 90 | GO:0004185: serine-type carboxypeptidase activity | 4.08E-02 |
| 91 | GO:0004871: signal transducer activity | 4.31E-02 |
| 92 | GO:0043621: protein self-association | 4.31E-02 |
| 93 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.55E-02 |