Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G07540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0009606: tropism0.00E+00
3GO:0090322: regulation of superoxide metabolic process0.00E+00
4GO:0000372: Group I intron splicing0.00E+00
5GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
6GO:0044774: mitotic DNA integrity checkpoint0.00E+00
7GO:0080127: fruit septum development0.00E+00
8GO:0019988: charged-tRNA amino acid modification0.00E+00
9GO:0090615: mitochondrial mRNA processing0.00E+00
10GO:0000492: box C/D snoRNP assembly0.00E+00
11GO:0042794: rRNA transcription from plastid promoter0.00E+00
12GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
13GO:0045014: negative regulation of transcription by glucose0.00E+00
14GO:0000819: sister chromatid segregation0.00E+00
15GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
16GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
17GO:0009658: chloroplast organization1.57E-06
18GO:0042793: transcription from plastid promoter6.38E-06
19GO:0006353: DNA-templated transcription, termination2.54E-05
20GO:0042127: regulation of cell proliferation4.46E-05
21GO:0006351: transcription, DNA-templated1.22E-04
22GO:1900864: mitochondrial RNA modification1.30E-04
23GO:0048497: maintenance of floral organ identity2.00E-04
24GO:0009913: epidermal cell differentiation2.83E-04
25GO:0009793: embryo development ending in seed dormancy4.74E-04
26GO:0080112: seed growth4.81E-04
27GO:1905039: carboxylic acid transmembrane transport4.81E-04
28GO:1905200: gibberellic acid transmembrane transport4.81E-04
29GO:1903866: palisade mesophyll development4.81E-04
30GO:0010063: positive regulation of trichoblast fate specification4.81E-04
31GO:0090063: positive regulation of microtubule nucleation4.81E-04
32GO:0042759: long-chain fatty acid biosynthetic process4.81E-04
33GO:0033206: meiotic cytokinesis4.81E-04
34GO:0034757: negative regulation of iron ion transport4.81E-04
35GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.81E-04
36GO:0006401: RNA catabolic process4.86E-04
37GO:0006955: immune response4.86E-04
38GO:0042255: ribosome assembly6.06E-04
39GO:0010305: leaf vascular tissue pattern formation7.24E-04
40GO:0007389: pattern specification process7.39E-04
41GO:0000373: Group II intron splicing8.84E-04
42GO:0040008: regulation of growth8.91E-04
43GO:0006355: regulation of transcription, DNA-templated9.78E-04
44GO:0010583: response to cyclopentenone1.03E-03
45GO:1900865: chloroplast RNA modification1.04E-03
46GO:0010569: regulation of double-strand break repair via homologous recombination1.04E-03
47GO:0048731: system development1.04E-03
48GO:0010271: regulation of chlorophyll catabolic process1.04E-03
49GO:0010541: acropetal auxin transport1.04E-03
50GO:2000071: regulation of defense response by callose deposition1.04E-03
51GO:0009662: etioplast organization1.04E-03
52GO:0080009: mRNA methylation1.04E-03
53GO:1901529: positive regulation of anion channel activity1.04E-03
54GO:0033566: gamma-tubulin complex localization1.04E-03
55GO:0006364: rRNA processing1.08E-03
56GO:0048829: root cap development1.21E-03
57GO:0048229: gametophyte development1.40E-03
58GO:0090391: granum assembly1.69E-03
59GO:0006518: peptide metabolic process1.69E-03
60GO:0042780: tRNA 3'-end processing1.69E-03
61GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.69E-03
62GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.69E-03
63GO:0080117: secondary growth1.69E-03
64GO:0010588: cotyledon vascular tissue pattern formation1.82E-03
65GO:0009558: embryo sac cellularization2.45E-03
66GO:0010371: regulation of gibberellin biosynthetic process2.45E-03
67GO:0010071: root meristem specification2.45E-03
68GO:0009102: biotin biosynthetic process2.45E-03
69GO:0010239: chloroplast mRNA processing2.45E-03
70GO:0007276: gamete generation2.45E-03
71GO:0043481: anthocyanin accumulation in tissues in response to UV light2.45E-03
72GO:2000377: regulation of reactive oxygen species metabolic process2.85E-03
73GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.23E-03
74GO:2000038: regulation of stomatal complex development3.30E-03
75GO:0006808: regulation of nitrogen utilization3.30E-03
76GO:0006479: protein methylation3.30E-03
77GO:0006221: pyrimidine nucleotide biosynthetic process3.30E-03
78GO:0009734: auxin-activated signaling pathway3.33E-03
79GO:0003333: amino acid transmembrane transport3.46E-03
80GO:0016998: cell wall macromolecule catabolic process3.46E-03
81GO:2000022: regulation of jasmonic acid mediated signaling pathway3.79E-03
82GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.14E-03
83GO:0016558: protein import into peroxisome matrix4.23E-03
84GO:0016120: carotene biosynthetic process4.23E-03
85GO:0016123: xanthophyll biosynthetic process4.23E-03
86GO:0032876: negative regulation of DNA endoreduplication4.23E-03
87GO:0030308: negative regulation of cell growth4.23E-03
88GO:0009451: RNA modification4.44E-03
89GO:0010315: auxin efflux5.24E-03
90GO:0048831: regulation of shoot system development5.24E-03
91GO:0003006: developmental process involved in reproduction5.24E-03
92GO:0009643: photosynthetic acclimation5.24E-03
93GO:0009959: negative gravitropism5.24E-03
94GO:0016554: cytidine to uridine editing5.24E-03
95GO:0060918: auxin transport5.24E-03
96GO:0009416: response to light stimulus5.25E-03
97GO:0010501: RNA secondary structure unwinding5.27E-03
98GO:0010087: phloem or xylem histogenesis5.27E-03
99GO:0007018: microtubule-based movement6.12E-03
100GO:2000033: regulation of seed dormancy process6.32E-03
101GO:0009942: longitudinal axis specification6.32E-03
102GO:0048509: regulation of meristem development6.32E-03
103GO:2000037: regulation of stomatal complex patterning6.32E-03
104GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity6.32E-03
105GO:0010310: regulation of hydrogen peroxide metabolic process6.32E-03
106GO:0009955: adaxial/abaxial pattern specification6.32E-03
107GO:0048825: cotyledon development6.57E-03
108GO:0080156: mitochondrial mRNA modification7.03E-03
109GO:0010098: suspensor development7.48E-03
110GO:0010444: guard mother cell differentiation7.48E-03
111GO:0000082: G1/S transition of mitotic cell cycle7.48E-03
112GO:0010103: stomatal complex morphogenesis7.48E-03
113GO:0048367: shoot system development7.48E-03
114GO:0000712: resolution of meiotic recombination intermediates7.48E-03
115GO:0010374: stomatal complex development7.48E-03
116GO:0030497: fatty acid elongation7.48E-03
117GO:0048437: floral organ development7.48E-03
118GO:0032502: developmental process7.52E-03
119GO:0009828: plant-type cell wall loosening8.54E-03
120GO:0009787: regulation of abscisic acid-activated signaling pathway8.71E-03
121GO:0009642: response to light intensity8.71E-03
122GO:0046620: regulation of organ growth8.71E-03
123GO:0048766: root hair initiation8.71E-03
124GO:0010492: maintenance of shoot apical meristem identity8.71E-03
125GO:0052543: callose deposition in cell wall8.71E-03
126GO:0009938: negative regulation of gibberellic acid mediated signaling pathway8.71E-03
127GO:0006402: mRNA catabolic process8.71E-03
128GO:0010233: phloem transport1.00E-02
129GO:0010497: plasmodesmata-mediated intercellular transport1.00E-02
130GO:0010052: guard cell differentiation1.00E-02
131GO:0048574: long-day photoperiodism, flowering1.00E-02
132GO:0032544: plastid translation1.00E-02
133GO:0009827: plant-type cell wall modification1.00E-02
134GO:0019430: removal of superoxide radicals1.00E-02
135GO:0048366: leaf development1.07E-02
136GO:0010029: regulation of seed germination1.08E-02
137GO:0048507: meristem development1.14E-02
138GO:0048589: developmental growth1.14E-02
139GO:0000902: cell morphogenesis1.14E-02
140GO:0031425: chloroplast RNA processing1.28E-02
141GO:0042761: very long-chain fatty acid biosynthetic process1.28E-02
142GO:0006349: regulation of gene expression by genetic imprinting1.28E-02
143GO:0048481: plant ovule development1.34E-02
144GO:0006535: cysteine biosynthetic process from serine1.43E-02
145GO:0009641: shade avoidance1.43E-02
146GO:0016441: posttranscriptional gene silencing1.43E-02
147GO:0006949: syncytium formation1.43E-02
148GO:0006259: DNA metabolic process1.43E-02
149GO:0010048: vernalization response1.43E-02
150GO:0045892: negative regulation of transcription, DNA-templated1.55E-02
151GO:0006265: DNA topological change1.58E-02
152GO:0009682: induced systemic resistance1.58E-02
153GO:0008285: negative regulation of cell proliferation1.58E-02
154GO:0015770: sucrose transport1.58E-02
155GO:1903507: negative regulation of nucleic acid-templated transcription1.58E-02
156GO:0009750: response to fructose1.58E-02
157GO:0048765: root hair cell differentiation1.58E-02
158GO:0046856: phosphatidylinositol dephosphorylation1.58E-02
159GO:0000038: very long-chain fatty acid metabolic process1.58E-02
160GO:0006865: amino acid transport1.62E-02
161GO:0009867: jasmonic acid mediated signaling pathway1.70E-02
162GO:0010152: pollen maturation1.74E-02
163GO:0045037: protein import into chloroplast stroma1.74E-02
164GO:0010582: floral meristem determinacy1.74E-02
165GO:0008361: regulation of cell size1.74E-02
166GO:0006312: mitotic recombination1.74E-02
167GO:0012501: programmed cell death1.74E-02
168GO:0010102: lateral root morphogenesis1.91E-02
169GO:0030001: metal ion transport1.94E-02
170GO:0010020: chloroplast fission2.08E-02
171GO:0006270: DNA replication initiation2.08E-02
172GO:0009887: animal organ morphogenesis2.08E-02
173GO:0010540: basipetal auxin transport2.08E-02
174GO:0048768: root hair cell tip growth2.08E-02
175GO:0048467: gynoecium development2.08E-02
176GO:0009739: response to gibberellin2.11E-02
177GO:0009744: response to sucrose2.19E-02
178GO:0048364: root development2.21E-02
179GO:0006397: mRNA processing2.21E-02
180GO:0080188: RNA-directed DNA methylation2.26E-02
181GO:0009901: anther dehiscence2.26E-02
182GO:0008380: RNA splicing2.29E-02
183GO:0010025: wax biosynthetic process2.44E-02
184GO:0006636: unsaturated fatty acid biosynthetic process2.44E-02
185GO:0009733: response to auxin2.56E-02
186GO:0009863: salicylic acid mediated signaling pathway2.62E-02
187GO:0010187: negative regulation of seed germination2.62E-02
188GO:0019344: cysteine biosynthetic process2.62E-02
189GO:0006260: DNA replication2.66E-02
190GO:0031347: regulation of defense response2.66E-02
191GO:0009664: plant-type cell wall organization2.76E-02
192GO:0010073: meristem maintenance2.82E-02
193GO:0009736: cytokinin-activated signaling pathway2.96E-02
194GO:0010431: seed maturation3.01E-02
195GO:0030245: cellulose catabolic process3.21E-02
196GO:0071215: cellular response to abscisic acid stimulus3.42E-02
197GO:0010082: regulation of root meristem growth3.42E-02
198GO:0010091: trichome branching3.63E-02
199GO:0048443: stamen development3.63E-02
200GO:0006468: protein phosphorylation3.70E-02
201GO:0070417: cellular response to cold3.84E-02
202GO:0009740: gibberellic acid mediated signaling pathway3.96E-02
203GO:0042335: cuticle development4.06E-02
204GO:0080022: primary root development4.06E-02
205GO:0008033: tRNA processing4.06E-02
206GO:0010118: stomatal movement4.06E-02
207GO:0042631: cellular response to water deprivation4.06E-02
208GO:0009624: response to nematode4.20E-02
209GO:0071472: cellular response to salt stress4.28E-02
210GO:0009741: response to brassinosteroid4.28E-02
211GO:0009960: endosperm development4.28E-02
212GO:0009958: positive gravitropism4.28E-02
213GO:0006396: RNA processing4.33E-02
214GO:0051726: regulation of cell cycle4.45E-02
215GO:0007059: chromosome segregation4.51E-02
216GO:0009749: response to glucose4.74E-02
217GO:0002229: defense response to oomycetes4.97E-02
218GO:0006635: fatty acid beta-oxidation4.97E-02
RankGO TermAdjusted P value
1GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity0.00E+00
2GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity0.00E+00
3GO:0016763: transferase activity, transferring pentosyl groups0.00E+00
4GO:0008859: exoribonuclease II activity0.00E+00
5GO:0042834: peptidoglycan binding0.00E+00
6GO:0004141: dethiobiotin synthase activity0.00E+00
7GO:0003723: RNA binding1.75E-06
8GO:0003697: single-stranded DNA binding4.64E-04
9GO:0016274: protein-arginine N-methyltransferase activity4.81E-04
10GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor4.81E-04
11GO:0004654: polyribonucleotide nucleotidyltransferase activity4.81E-04
12GO:0004016: adenylate cyclase activity4.81E-04
13GO:1905201: gibberellin transmembrane transporter activity4.81E-04
14GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.81E-04
15GO:0003727: single-stranded RNA binding5.37E-04
16GO:0003700: transcription factor activity, sequence-specific DNA binding7.18E-04
17GO:0008173: RNA methyltransferase activity7.39E-04
18GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.04E-03
19GO:0009884: cytokinin receptor activity1.04E-03
20GO:0042389: omega-3 fatty acid desaturase activity1.04E-03
21GO:0043565: sequence-specific DNA binding1.09E-03
22GO:0003690: double-stranded DNA binding1.14E-03
23GO:0042781: 3'-tRNA processing endoribonuclease activity1.69E-03
24GO:0016805: dipeptidase activity1.69E-03
25GO:0005034: osmosensor activity1.69E-03
26GO:0017150: tRNA dihydrouridine synthase activity1.69E-03
27GO:0003677: DNA binding1.69E-03
28GO:0000175: 3'-5'-exoribonuclease activity1.82E-03
29GO:0004519: endonuclease activity1.99E-03
30GO:0009041: uridylate kinase activity2.45E-03
31GO:0003916: DNA topoisomerase activity2.45E-03
32GO:0001872: (1->3)-beta-D-glucan binding2.45E-03
33GO:0019843: rRNA binding2.61E-03
34GO:0008289: lipid binding3.25E-03
35GO:0010011: auxin binding3.30E-03
36GO:0010328: auxin influx transmembrane transporter activity3.30E-03
37GO:0030570: pectate lyase activity4.14E-03
38GO:0042803: protein homodimerization activity4.54E-03
39GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity5.24E-03
40GO:0004784: superoxide dismutase activity5.24E-03
41GO:0003688: DNA replication origin binding5.24E-03
42GO:0016832: aldehyde-lyase activity6.32E-03
43GO:0019900: kinase binding6.32E-03
44GO:0004124: cysteine synthase activity6.32E-03
45GO:0003777: microtubule motor activity6.60E-03
46GO:0030515: snoRNA binding7.48E-03
47GO:0008168: methyltransferase activity7.87E-03
48GO:0008026: ATP-dependent helicase activity9.81E-03
49GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.00E-02
50GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.00E-02
51GO:0003724: RNA helicase activity1.00E-02
52GO:0000989: transcription factor activity, transcription factor binding1.14E-02
53GO:0004004: ATP-dependent RNA helicase activity1.20E-02
54GO:0009672: auxin:proton symporter activity1.28E-02
55GO:0016887: ATPase activity1.30E-02
56GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.43E-02
57GO:0004673: protein histidine kinase activity1.43E-02
58GO:0008515: sucrose transmembrane transporter activity1.58E-02
59GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.74E-02
60GO:0005524: ATP binding1.85E-02
61GO:0010329: auxin efflux transmembrane transporter activity1.91E-02
62GO:0000155: phosphorelay sensor kinase activity1.91E-02
63GO:0009982: pseudouridine synthase activity1.91E-02
64GO:0003725: double-stranded RNA binding1.91E-02
65GO:0003712: transcription cofactor activity2.26E-02
66GO:0051119: sugar transmembrane transporter activity2.26E-02
67GO:0004190: aspartic-type endopeptidase activity2.26E-02
68GO:0004674: protein serine/threonine kinase activity2.34E-02
69GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.44E-02
70GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.44E-02
71GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.44E-02
72GO:0015293: symporter activity2.47E-02
73GO:0005215: transporter activity2.49E-02
74GO:0003714: transcription corepressor activity2.62E-02
75GO:0015079: potassium ion transmembrane transporter activity2.82E-02
76GO:0043424: protein histidine kinase binding2.82E-02
77GO:0005515: protein binding2.99E-02
78GO:0008094: DNA-dependent ATPase activity3.01E-02
79GO:0004540: ribonuclease activity3.01E-02
80GO:0016298: lipase activity3.06E-02
81GO:0015171: amino acid transmembrane transporter activity3.28E-02
82GO:0008810: cellulase activity3.42E-02
83GO:0018024: histone-lysine N-methyltransferase activity3.84E-02
84GO:0005102: receptor binding3.84E-02
85GO:0004672: protein kinase activity4.19E-02
86GO:0003713: transcription coactivator activity4.28E-02
87GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity4.28E-02
88GO:0001085: RNA polymerase II transcription factor binding4.28E-02
89GO:0004386: helicase activity4.58E-02
90GO:0052689: carboxylic ester hydrolase activity4.66E-02
91GO:0019901: protein kinase binding4.74E-02
92GO:0048038: quinone binding4.97E-02
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Gene type



Gene DE type