GO Enrichment Analysis of Co-expressed Genes with
AT3G07500
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043488: regulation of mRNA stability | 0.00E+00 |
| 2 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 3 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 4 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 5 | GO:0007037: vacuolar phosphate transport | 0.00E+00 |
| 6 | GO:0045176: apical protein localization | 0.00E+00 |
| 7 | GO:0031116: positive regulation of microtubule polymerization | 0.00E+00 |
| 8 | GO:0031129: inductive cell-cell signaling | 0.00E+00 |
| 9 | GO:2001294: malonyl-CoA catabolic process | 0.00E+00 |
| 10 | GO:0051322: anaphase | 8.71E-05 |
| 11 | GO:0006021: inositol biosynthetic process | 8.71E-05 |
| 12 | GO:1902183: regulation of shoot apical meristem development | 1.36E-04 |
| 13 | GO:0010158: abaxial cell fate specification | 1.36E-04 |
| 14 | GO:0006659: phosphatidylserine biosynthetic process | 3.78E-04 |
| 15 | GO:0006264: mitochondrial DNA replication | 3.78E-04 |
| 16 | GO:0033259: plastid DNA replication | 3.78E-04 |
| 17 | GO:0006177: GMP biosynthetic process | 3.78E-04 |
| 18 | GO:0010450: inflorescence meristem growth | 3.78E-04 |
| 19 | GO:0051171: regulation of nitrogen compound metabolic process | 3.78E-04 |
| 20 | GO:0010362: negative regulation of anion channel activity by blue light | 3.78E-04 |
| 21 | GO:0010482: regulation of epidermal cell division | 3.78E-04 |
| 22 | GO:0031426: polycistronic mRNA processing | 3.78E-04 |
| 23 | GO:0071028: nuclear mRNA surveillance | 3.78E-04 |
| 24 | GO:0007155: cell adhesion | 4.26E-04 |
| 25 | GO:2000024: regulation of leaf development | 6.25E-04 |
| 26 | GO:0009638: phototropism | 7.38E-04 |
| 27 | GO:1900865: chloroplast RNA modification | 7.38E-04 |
| 28 | GO:0042814: monopolar cell growth | 8.22E-04 |
| 29 | GO:0031125: rRNA 3'-end processing | 8.22E-04 |
| 30 | GO:0010155: regulation of proton transport | 8.22E-04 |
| 31 | GO:0071051: polyadenylation-dependent snoRNA 3'-end processing | 8.22E-04 |
| 32 | GO:0034475: U4 snRNA 3'-end processing | 8.22E-04 |
| 33 | GO:2000039: regulation of trichome morphogenesis | 8.22E-04 |
| 34 | GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole | 8.22E-04 |
| 35 | GO:0010115: regulation of abscisic acid biosynthetic process | 8.22E-04 |
| 36 | GO:1900871: chloroplast mRNA modification | 8.22E-04 |
| 37 | GO:0007154: cell communication | 8.22E-04 |
| 38 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 8.22E-04 |
| 39 | GO:1900033: negative regulation of trichome patterning | 8.22E-04 |
| 40 | GO:0006790: sulfur compound metabolic process | 1.13E-03 |
| 41 | GO:0001578: microtubule bundle formation | 1.33E-03 |
| 42 | GO:0045493: xylan catabolic process | 1.33E-03 |
| 43 | GO:0045165: cell fate commitment | 1.33E-03 |
| 44 | GO:0016075: rRNA catabolic process | 1.33E-03 |
| 45 | GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 1.33E-03 |
| 46 | GO:0051127: positive regulation of actin nucleation | 1.33E-03 |
| 47 | GO:0045604: regulation of epidermal cell differentiation | 1.33E-03 |
| 48 | GO:0006753: nucleoside phosphate metabolic process | 1.33E-03 |
| 49 | GO:0080055: low-affinity nitrate transport | 1.33E-03 |
| 50 | GO:0009150: purine ribonucleotide metabolic process | 1.33E-03 |
| 51 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.92E-03 |
| 52 | GO:0006166: purine ribonucleoside salvage | 1.92E-03 |
| 53 | GO:0010239: chloroplast mRNA processing | 1.92E-03 |
| 54 | GO:0009647: skotomorphogenesis | 1.92E-03 |
| 55 | GO:0006164: purine nucleotide biosynthetic process | 1.92E-03 |
| 56 | GO:0009963: positive regulation of flavonoid biosynthetic process | 1.92E-03 |
| 57 | GO:0010255: glucose mediated signaling pathway | 1.92E-03 |
| 58 | GO:0048530: fruit morphogenesis | 1.92E-03 |
| 59 | GO:0006168: adenine salvage | 1.92E-03 |
| 60 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.99E-03 |
| 61 | GO:0009416: response to light stimulus | 2.56E-03 |
| 62 | GO:0048629: trichome patterning | 2.58E-03 |
| 63 | GO:0009649: entrainment of circadian clock | 2.58E-03 |
| 64 | GO:0007020: microtubule nucleation | 2.58E-03 |
| 65 | GO:0008295: spermidine biosynthetic process | 2.58E-03 |
| 66 | GO:0032366: intracellular sterol transport | 2.58E-03 |
| 67 | GO:0044209: AMP salvage | 3.30E-03 |
| 68 | GO:0034052: positive regulation of plant-type hypersensitive response | 3.30E-03 |
| 69 | GO:0046785: microtubule polymerization | 3.30E-03 |
| 70 | GO:0006544: glycine metabolic process | 3.30E-03 |
| 71 | GO:0046283: anthocyanin-containing compound metabolic process | 3.30E-03 |
| 72 | GO:0009904: chloroplast accumulation movement | 3.30E-03 |
| 73 | GO:0045038: protein import into chloroplast thylakoid membrane | 3.30E-03 |
| 74 | GO:0009585: red, far-red light phototransduction | 3.65E-03 |
| 75 | GO:0010182: sugar mediated signaling pathway | 3.96E-03 |
| 76 | GO:0010154: fruit development | 3.96E-03 |
| 77 | GO:0006561: proline biosynthetic process | 4.08E-03 |
| 78 | GO:0006563: L-serine metabolic process | 4.08E-03 |
| 79 | GO:0048827: phyllome development | 4.08E-03 |
| 80 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 4.08E-03 |
| 81 | GO:0016554: cytidine to uridine editing | 4.08E-03 |
| 82 | GO:0000741: karyogamy | 4.08E-03 |
| 83 | GO:0046855: inositol phosphate dephosphorylation | 4.08E-03 |
| 84 | GO:0007018: microtubule-based movement | 4.26E-03 |
| 85 | GO:0009791: post-embryonic development | 4.57E-03 |
| 86 | GO:0048825: cotyledon development | 4.57E-03 |
| 87 | GO:0009099: valine biosynthetic process | 4.92E-03 |
| 88 | GO:0009903: chloroplast avoidance movement | 4.92E-03 |
| 89 | GO:0009088: threonine biosynthetic process | 4.92E-03 |
| 90 | GO:0048444: floral organ morphogenesis | 4.92E-03 |
| 91 | GO:0009648: photoperiodism | 4.92E-03 |
| 92 | GO:0042372: phylloquinone biosynthetic process | 4.92E-03 |
| 93 | GO:0009082: branched-chain amino acid biosynthetic process | 4.92E-03 |
| 94 | GO:0048280: vesicle fusion with Golgi apparatus | 4.92E-03 |
| 95 | GO:0010583: response to cyclopentenone | 5.23E-03 |
| 96 | GO:0009395: phospholipid catabolic process | 5.81E-03 |
| 97 | GO:0048528: post-embryonic root development | 5.81E-03 |
| 98 | GO:0010196: nonphotochemical quenching | 5.81E-03 |
| 99 | GO:0015937: coenzyme A biosynthetic process | 5.81E-03 |
| 100 | GO:0000910: cytokinesis | 6.69E-03 |
| 101 | GO:0043068: positive regulation of programmed cell death | 6.75E-03 |
| 102 | GO:0010078: maintenance of root meristem identity | 6.75E-03 |
| 103 | GO:0043562: cellular response to nitrogen levels | 7.75E-03 |
| 104 | GO:0010093: specification of floral organ identity | 7.75E-03 |
| 105 | GO:0009097: isoleucine biosynthetic process | 7.75E-03 |
| 106 | GO:0006997: nucleus organization | 7.75E-03 |
| 107 | GO:0048573: photoperiodism, flowering | 8.36E-03 |
| 108 | GO:0000373: Group II intron splicing | 8.79E-03 |
| 109 | GO:0006189: 'de novo' IMP biosynthetic process | 8.79E-03 |
| 110 | GO:0048507: meristem development | 8.79E-03 |
| 111 | GO:0009098: leucine biosynthetic process | 9.89E-03 |
| 112 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 9.89E-03 |
| 113 | GO:0010380: regulation of chlorophyll biosynthetic process | 9.89E-03 |
| 114 | GO:0006811: ion transport | 1.02E-02 |
| 115 | GO:0010119: regulation of stomatal movement | 1.07E-02 |
| 116 | GO:0009688: abscisic acid biosynthetic process | 1.10E-02 |
| 117 | GO:0045036: protein targeting to chloroplast | 1.10E-02 |
| 118 | GO:0009641: shade avoidance | 1.10E-02 |
| 119 | GO:0010192: mucilage biosynthetic process | 1.10E-02 |
| 120 | GO:0006896: Golgi to vacuole transport | 1.10E-02 |
| 121 | GO:0009299: mRNA transcription | 1.10E-02 |
| 122 | GO:0006535: cysteine biosynthetic process from serine | 1.10E-02 |
| 123 | GO:0045490: pectin catabolic process | 1.15E-02 |
| 124 | GO:0007623: circadian rhythm | 1.15E-02 |
| 125 | GO:0009750: response to fructose | 1.22E-02 |
| 126 | GO:0009684: indoleacetic acid biosynthetic process | 1.22E-02 |
| 127 | GO:0006415: translational termination | 1.22E-02 |
| 128 | GO:1903507: negative regulation of nucleic acid-templated transcription | 1.22E-02 |
| 129 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.34E-02 |
| 130 | GO:0006631: fatty acid metabolic process | 1.40E-02 |
| 131 | GO:0010229: inflorescence development | 1.47E-02 |
| 132 | GO:0030036: actin cytoskeleton organization | 1.47E-02 |
| 133 | GO:0009725: response to hormone | 1.47E-02 |
| 134 | GO:0009767: photosynthetic electron transport chain | 1.47E-02 |
| 135 | GO:0010588: cotyledon vascular tissue pattern formation | 1.47E-02 |
| 136 | GO:0009785: blue light signaling pathway | 1.47E-02 |
| 137 | GO:0010540: basipetal auxin transport | 1.60E-02 |
| 138 | GO:0048467: gynoecium development | 1.60E-02 |
| 139 | GO:0010143: cutin biosynthetic process | 1.60E-02 |
| 140 | GO:0006541: glutamine metabolic process | 1.60E-02 |
| 141 | GO:0009933: meristem structural organization | 1.60E-02 |
| 142 | GO:0090351: seedling development | 1.74E-02 |
| 143 | GO:0010030: positive regulation of seed germination | 1.74E-02 |
| 144 | GO:0046854: phosphatidylinositol phosphorylation | 1.74E-02 |
| 145 | GO:0009825: multidimensional cell growth | 1.74E-02 |
| 146 | GO:0019853: L-ascorbic acid biosynthetic process | 1.74E-02 |
| 147 | GO:0000162: tryptophan biosynthetic process | 1.88E-02 |
| 148 | GO:0042753: positive regulation of circadian rhythm | 1.88E-02 |
| 149 | GO:0019344: cysteine biosynthetic process | 2.02E-02 |
| 150 | GO:0000027: ribosomal large subunit assembly | 2.02E-02 |
| 151 | GO:0007010: cytoskeleton organization | 2.02E-02 |
| 152 | GO:0010187: negative regulation of seed germination | 2.02E-02 |
| 153 | GO:0043622: cortical microtubule organization | 2.17E-02 |
| 154 | GO:0007017: microtubule-based process | 2.17E-02 |
| 155 | GO:0048511: rhythmic process | 2.32E-02 |
| 156 | GO:0009814: defense response, incompatible interaction | 2.48E-02 |
| 157 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 2.48E-02 |
| 158 | GO:0035428: hexose transmembrane transport | 2.48E-02 |
| 159 | GO:0048367: shoot system development | 2.51E-02 |
| 160 | GO:0009740: gibberellic acid mediated signaling pathway | 2.76E-02 |
| 161 | GO:0010091: trichome branching | 2.80E-02 |
| 162 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.96E-02 |
| 163 | GO:0042147: retrograde transport, endosome to Golgi | 2.96E-02 |
| 164 | GO:0035556: intracellular signal transduction | 3.07E-02 |
| 165 | GO:0010087: phloem or xylem histogenesis | 3.13E-02 |
| 166 | GO:0042631: cellular response to water deprivation | 3.13E-02 |
| 167 | GO:0000226: microtubule cytoskeleton organization | 3.13E-02 |
| 168 | GO:0000271: polysaccharide biosynthetic process | 3.13E-02 |
| 169 | GO:0080022: primary root development | 3.13E-02 |
| 170 | GO:0010197: polar nucleus fusion | 3.30E-02 |
| 171 | GO:0046323: glucose import | 3.30E-02 |
| 172 | GO:0045489: pectin biosynthetic process | 3.30E-02 |
| 173 | GO:0008360: regulation of cell shape | 3.30E-02 |
| 174 | GO:0009958: positive gravitropism | 3.30E-02 |
| 175 | GO:0009733: response to auxin | 3.53E-02 |
| 176 | GO:0008654: phospholipid biosynthetic process | 3.66E-02 |
| 177 | GO:0009851: auxin biosynthetic process | 3.66E-02 |
| 178 | GO:0006623: protein targeting to vacuole | 3.66E-02 |
| 179 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 3.83E-02 |
| 180 | GO:0006891: intra-Golgi vesicle-mediated transport | 3.83E-02 |
| 181 | GO:0016032: viral process | 4.02E-02 |
| 182 | GO:0006629: lipid metabolic process | 4.26E-02 |
| 183 | GO:0006464: cellular protein modification process | 4.40E-02 |
| 184 | GO:0016126: sterol biosynthetic process | 4.98E-02 |
| 185 | GO:0009911: positive regulation of flower development | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 2 | GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity | 0.00E+00 |
| 3 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 4 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 5 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 6 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 7 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 8 | GO:0008017: microtubule binding | 9.40E-05 |
| 9 | GO:0000293: ferric-chelate reductase activity | 1.95E-04 |
| 10 | GO:0030570: pectate lyase activity | 3.01E-04 |
| 11 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 3.78E-04 |
| 12 | GO:0050139: nicotinate-N-glucosyltransferase activity | 3.78E-04 |
| 13 | GO:0010945: CoA pyrophosphatase activity | 3.78E-04 |
| 14 | GO:0004795: threonine synthase activity | 3.78E-04 |
| 15 | GO:0003777: microtubule motor activity | 7.34E-04 |
| 16 | GO:0042802: identical protein binding | 7.81E-04 |
| 17 | GO:0050017: L-3-cyanoalanine synthase activity | 8.22E-04 |
| 18 | GO:0017118: lipoyltransferase activity | 8.22E-04 |
| 19 | GO:0043425: bHLH transcription factor binding | 8.22E-04 |
| 20 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 8.22E-04 |
| 21 | GO:0003938: IMP dehydrogenase activity | 8.22E-04 |
| 22 | GO:0004766: spermidine synthase activity | 8.22E-04 |
| 23 | GO:0052832: inositol monophosphate 3-phosphatase activity | 8.22E-04 |
| 24 | GO:0008934: inositol monophosphate 1-phosphatase activity | 8.22E-04 |
| 25 | GO:0052833: inositol monophosphate 4-phosphatase activity | 8.22E-04 |
| 26 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 8.22E-04 |
| 27 | GO:0015929: hexosaminidase activity | 8.22E-04 |
| 28 | GO:0004563: beta-N-acetylhexosaminidase activity | 8.22E-04 |
| 29 | GO:0004512: inositol-3-phosphate synthase activity | 8.22E-04 |
| 30 | GO:0047372: acylglycerol lipase activity | 9.90E-04 |
| 31 | GO:0004049: anthranilate synthase activity | 1.33E-03 |
| 32 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 1.33E-03 |
| 33 | GO:0003913: DNA photolyase activity | 1.33E-03 |
| 34 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.33E-03 |
| 35 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.44E-03 |
| 36 | GO:0009882: blue light photoreceptor activity | 1.92E-03 |
| 37 | GO:0047627: adenylylsulfatase activity | 1.92E-03 |
| 38 | GO:0052654: L-leucine transaminase activity | 1.92E-03 |
| 39 | GO:0052655: L-valine transaminase activity | 1.92E-03 |
| 40 | GO:0000254: C-4 methylsterol oxidase activity | 1.92E-03 |
| 41 | GO:0048027: mRNA 5'-UTR binding | 1.92E-03 |
| 42 | GO:0003999: adenine phosphoribosyltransferase activity | 1.92E-03 |
| 43 | GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | 1.92E-03 |
| 44 | GO:0052656: L-isoleucine transaminase activity | 1.92E-03 |
| 45 | GO:0046556: alpha-L-arabinofuranosidase activity | 2.58E-03 |
| 46 | GO:0008409: 5'-3' exonuclease activity | 2.58E-03 |
| 47 | GO:0080032: methyl jasmonate esterase activity | 2.58E-03 |
| 48 | GO:0004084: branched-chain-amino-acid transaminase activity | 2.58E-03 |
| 49 | GO:0009044: xylan 1,4-beta-xylosidase activity | 2.58E-03 |
| 50 | GO:0016846: carbon-sulfur lyase activity | 3.30E-03 |
| 51 | GO:0004372: glycine hydroxymethyltransferase activity | 3.30E-03 |
| 52 | GO:0001085: RNA polymerase II transcription factor binding | 3.96E-03 |
| 53 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 4.08E-03 |
| 54 | GO:0004709: MAP kinase kinase kinase activity | 4.08E-03 |
| 55 | GO:0000210: NAD+ diphosphatase activity | 4.08E-03 |
| 56 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 4.08E-03 |
| 57 | GO:0016208: AMP binding | 4.08E-03 |
| 58 | GO:0042578: phosphoric ester hydrolase activity | 4.08E-03 |
| 59 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 4.92E-03 |
| 60 | GO:0004124: cysteine synthase activity | 4.92E-03 |
| 61 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 4.92E-03 |
| 62 | GO:0009927: histidine phosphotransfer kinase activity | 4.92E-03 |
| 63 | GO:0003730: mRNA 3'-UTR binding | 4.92E-03 |
| 64 | GO:0016788: hydrolase activity, acting on ester bonds | 4.94E-03 |
| 65 | GO:0043022: ribosome binding | 6.75E-03 |
| 66 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 7.90E-03 |
| 67 | GO:0030247: polysaccharide binding | 8.36E-03 |
| 68 | GO:0016829: lyase activity | 8.44E-03 |
| 69 | GO:0003747: translation release factor activity | 8.79E-03 |
| 70 | GO:0004871: signal transducer activity | 9.39E-03 |
| 71 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.07E-02 |
| 72 | GO:0050897: cobalt ion binding | 1.07E-02 |
| 73 | GO:0008794: arsenate reductase (glutaredoxin) activity | 1.22E-02 |
| 74 | GO:0000155: phosphorelay sensor kinase activity | 1.47E-02 |
| 75 | GO:0000175: 3'-5'-exoribonuclease activity | 1.47E-02 |
| 76 | GO:0008081: phosphoric diester hydrolase activity | 1.47E-02 |
| 77 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.47E-02 |
| 78 | GO:0008131: primary amine oxidase activity | 1.60E-02 |
| 79 | GO:0008146: sulfotransferase activity | 1.74E-02 |
| 80 | GO:0003887: DNA-directed DNA polymerase activity | 1.88E-02 |
| 81 | GO:0005528: FK506 binding | 2.02E-02 |
| 82 | GO:0003714: transcription corepressor activity | 2.02E-02 |
| 83 | GO:0046872: metal ion binding | 2.03E-02 |
| 84 | GO:0004672: protein kinase activity | 2.14E-02 |
| 85 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 2.32E-02 |
| 86 | GO:0008408: 3'-5' exonuclease activity | 2.32E-02 |
| 87 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 2.48E-02 |
| 88 | GO:0004497: monooxygenase activity | 2.63E-02 |
| 89 | GO:0016874: ligase activity | 2.76E-02 |
| 90 | GO:0003727: single-stranded RNA binding | 2.80E-02 |
| 91 | GO:0005506: iron ion binding | 2.84E-02 |
| 92 | GO:0044212: transcription regulatory region DNA binding | 2.92E-02 |
| 93 | GO:0052689: carboxylic ester hydrolase activity | 2.98E-02 |
| 94 | GO:0016746: transferase activity, transferring acyl groups | 3.01E-02 |
| 95 | GO:0003824: catalytic activity | 3.40E-02 |
| 96 | GO:0005355: glucose transmembrane transporter activity | 3.48E-02 |
| 97 | GO:0010181: FMN binding | 3.48E-02 |
| 98 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 4.16E-02 |
| 99 | GO:0016791: phosphatase activity | 4.40E-02 |
| 100 | GO:0016491: oxidoreductase activity | 4.58E-02 |
| 101 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 4.59E-02 |
| 102 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.69E-02 |
| 103 | GO:0019825: oxygen binding | 4.72E-02 |