Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G07440

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0097275: cellular ammonia homeostasis0.00E+00
2GO:2000505: regulation of energy homeostasis0.00E+00
3GO:0051924: regulation of calcium ion transport0.00E+00
4GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
5GO:0042407: cristae formation0.00E+00
6GO:0090279: regulation of calcium ion import0.00E+00
7GO:0042817: pyridoxal metabolic process0.00E+00
8GO:2001294: malonyl-CoA catabolic process0.00E+00
9GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
10GO:0071474: cellular hyperosmotic response0.00E+00
11GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
12GO:0006021: inositol biosynthetic process4.54E-05
13GO:0009904: chloroplast accumulation movement7.21E-05
14GO:0009903: chloroplast avoidance movement1.45E-04
15GO:0007155: cell adhesion2.41E-04
16GO:0007018: microtubule-based movement2.41E-04
17GO:1902458: positive regulation of stomatal opening2.57E-04
18GO:0006177: GMP biosynthetic process2.57E-04
19GO:0010362: negative regulation of anion channel activity by blue light2.57E-04
20GO:0015969: guanosine tetraphosphate metabolic process2.57E-04
21GO:0031426: polycistronic mRNA processing2.57E-04
22GO:0071028: nuclear mRNA surveillance2.57E-04
23GO:0043266: regulation of potassium ion transport2.57E-04
24GO:0006659: phosphatidylserine biosynthetic process2.57E-04
25GO:2000021: regulation of ion homeostasis2.57E-04
26GO:0010206: photosystem II repair3.60E-04
27GO:0031125: rRNA 3'-end processing5.68E-04
28GO:0010155: regulation of proton transport5.68E-04
29GO:1903426: regulation of reactive oxygen species biosynthetic process5.68E-04
30GO:0071051: polyadenylation-dependent snoRNA 3'-end processing5.68E-04
31GO:0051262: protein tetramerization5.68E-04
32GO:0006739: NADP metabolic process5.68E-04
33GO:0034475: U4 snRNA 3'-end processing5.68E-04
34GO:0006423: cysteinyl-tRNA aminoacylation5.68E-04
35GO:0006435: threonyl-tRNA aminoacylation5.68E-04
36GO:0007154: cell communication5.68E-04
37GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation5.68E-04
38GO:0000913: preprophase band assembly9.22E-04
39GO:0016075: rRNA catabolic process9.22E-04
40GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'9.22E-04
41GO:0031022: nuclear migration along microfilament9.22E-04
42GO:0019419: sulfate reduction9.22E-04
43GO:0006753: nucleoside phosphate metabolic process9.22E-04
44GO:0080055: low-affinity nitrate transport9.22E-04
45GO:0045493: xylan catabolic process9.22E-04
46GO:0080147: root hair cell development1.15E-03
47GO:0006166: purine ribonucleoside salvage1.32E-03
48GO:0009102: biotin biosynthetic process1.32E-03
49GO:2001289: lipid X metabolic process1.32E-03
50GO:0010239: chloroplast mRNA processing1.32E-03
51GO:0008615: pyridoxine biosynthetic process1.32E-03
52GO:0006164: purine nucleotide biosynthetic process1.32E-03
53GO:0006168: adenine salvage1.32E-03
54GO:2000306: positive regulation of photomorphogenesis1.76E-03
55GO:0006734: NADH metabolic process1.76E-03
56GO:0044209: AMP salvage2.25E-03
57GO:0045038: protein import into chloroplast thylakoid membrane2.25E-03
58GO:0045489: pectin biosynthetic process2.26E-03
59GO:0009791: post-embryonic development2.61E-03
60GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.77E-03
61GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.77E-03
62GO:0016554: cytidine to uridine editing2.77E-03
63GO:0045962: positive regulation of development, heterochronic2.77E-03
64GO:0010190: cytochrome b6f complex assembly2.77E-03
65GO:0018258: protein O-linked glycosylation via hydroxyproline2.77E-03
66GO:0046855: inositol phosphate dephosphorylation2.77E-03
67GO:0010405: arabinogalactan protein metabolic process2.77E-03
68GO:0009416: response to light stimulus3.22E-03
69GO:0042372: phylloquinone biosynthetic process3.33E-03
70GO:0009082: branched-chain amino acid biosynthetic process3.33E-03
71GO:0048280: vesicle fusion with Golgi apparatus3.33E-03
72GO:0009099: valine biosynthetic process3.33E-03
73GO:0030488: tRNA methylation3.33E-03
74GO:0015937: coenzyme A biosynthetic process3.93E-03
75GO:0016126: sterol biosynthetic process4.03E-03
76GO:0016559: peroxisome fission4.56E-03
77GO:0010078: maintenance of root meristem identity4.56E-03
78GO:2000070: regulation of response to water deprivation4.56E-03
79GO:0015995: chlorophyll biosynthetic process4.74E-03
80GO:0022900: electron transport chain5.22E-03
81GO:0015996: chlorophyll catabolic process5.22E-03
82GO:0007186: G-protein coupled receptor signaling pathway5.22E-03
83GO:0009097: isoleucine biosynthetic process5.22E-03
84GO:0043562: cellular response to nitrogen levels5.22E-03
85GO:0006811: ion transport5.79E-03
86GO:0009245: lipid A biosynthetic process5.92E-03
87GO:0048507: meristem development5.92E-03
88GO:0006189: 'de novo' IMP biosynthetic process5.92E-03
89GO:0009638: phototropism6.64E-03
90GO:0043067: regulation of programmed cell death6.64E-03
91GO:0009098: leucine biosynthetic process6.64E-03
92GO:0010018: far-red light signaling pathway6.64E-03
93GO:1900865: chloroplast RNA modification6.64E-03
94GO:0048354: mucilage biosynthetic process involved in seed coat development6.64E-03
95GO:0009637: response to blue light6.65E-03
96GO:0010192: mucilage biosynthetic process7.40E-03
97GO:0006896: Golgi to vacuole transport7.40E-03
98GO:0000103: sulfate assimilation7.40E-03
99GO:0006631: fatty acid metabolic process7.91E-03
100GO:0009684: indoleacetic acid biosynthetic process8.19E-03
101GO:0019684: photosynthesis, light reaction8.19E-03
102GO:0009089: lysine biosynthetic process via diaminopimelate8.19E-03
103GO:1903507: negative regulation of nucleic acid-templated transcription8.19E-03
104GO:0018119: peptidyl-cysteine S-nitrosylation8.19E-03
105GO:0055114: oxidation-reduction process8.98E-03
106GO:0006790: sulfur compound metabolic process9.00E-03
107GO:0016024: CDP-diacylglycerol biosynthetic process9.00E-03
108GO:0045037: protein import into chloroplast stroma9.00E-03
109GO:0009718: anthocyanin-containing compound biosynthetic process9.85E-03
110GO:0009767: photosynthetic electron transport chain9.85E-03
111GO:0010588: cotyledon vascular tissue pattern formation9.85E-03
112GO:0030048: actin filament-based movement9.85E-03
113GO:0009785: blue light signaling pathway9.85E-03
114GO:0006006: glucose metabolic process9.85E-03
115GO:0048467: gynoecium development1.07E-02
116GO:0010143: cutin biosynthetic process1.07E-02
117GO:0010207: photosystem II assembly1.07E-02
118GO:0010020: chloroplast fission1.07E-02
119GO:0019253: reductive pentose-phosphate cycle1.07E-02
120GO:0009825: multidimensional cell growth1.16E-02
121GO:0019853: L-ascorbic acid biosynthetic process1.16E-02
122GO:0090351: seedling development1.16E-02
123GO:0046854: phosphatidylinositol phosphorylation1.16E-02
124GO:0006857: oligopeptide transport1.24E-02
125GO:0042753: positive regulation of circadian rhythm1.25E-02
126GO:0019344: cysteine biosynthetic process1.35E-02
127GO:0007010: cytoskeleton organization1.35E-02
128GO:0006289: nucleotide-excision repair1.35E-02
129GO:0008299: isoprenoid biosynthetic process1.45E-02
130GO:0007017: microtubule-based process1.45E-02
131GO:0009768: photosynthesis, light harvesting in photosystem I1.45E-02
132GO:2000022: regulation of jasmonic acid mediated signaling pathway1.65E-02
133GO:0006396: RNA processing1.70E-02
134GO:0019722: calcium-mediated signaling1.86E-02
135GO:0042147: retrograde transport, endosome to Golgi1.97E-02
136GO:0080022: primary root development2.09E-02
137GO:0010087: phloem or xylem histogenesis2.09E-02
138GO:0009741: response to brassinosteroid2.20E-02
139GO:0009958: positive gravitropism2.20E-02
140GO:0010197: polar nucleus fusion2.20E-02
141GO:0010182: sugar mediated signaling pathway2.20E-02
142GO:0009851: auxin biosynthetic process2.43E-02
143GO:0006623: protein targeting to vacuole2.43E-02
144GO:0010183: pollen tube guidance2.43E-02
145GO:0048825: cotyledon development2.43E-02
146GO:0008654: phospholipid biosynthetic process2.43E-02
147GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.56E-02
148GO:0006891: intra-Golgi vesicle-mediated transport2.56E-02
149GO:0006413: translational initiation2.67E-02
150GO:0010583: response to cyclopentenone2.68E-02
151GO:0016032: viral process2.68E-02
152GO:1901657: glycosyl compound metabolic process2.80E-02
153GO:0030163: protein catabolic process2.80E-02
154GO:0007623: circadian rhythm2.87E-02
155GO:0045490: pectin catabolic process2.87E-02
156GO:0009639: response to red or far red light2.93E-02
157GO:0007267: cell-cell signaling3.06E-02
158GO:0000910: cytokinesis3.19E-02
159GO:0010027: thylakoid membrane organization3.32E-02
160GO:0071555: cell wall organization3.45E-02
161GO:0009627: systemic acquired resistance3.59E-02
162GO:0010411: xyloglucan metabolic process3.73E-02
163GO:0006888: ER to Golgi vesicle-mediated transport3.73E-02
164GO:0016311: dephosphorylation3.87E-02
165GO:0018298: protein-chromophore linkage4.01E-02
166GO:0000160: phosphorelay signal transduction system4.16E-02
167GO:0009813: flavonoid biosynthetic process4.16E-02
168GO:0006499: N-terminal protein myristoylation4.30E-02
169GO:0009407: toxin catabolic process4.30E-02
170GO:0007568: aging4.45E-02
171GO:0048527: lateral root development4.45E-02
172GO:0010119: regulation of stomatal movement4.45E-02
173GO:0009793: embryo development ending in seed dormancy4.53E-02
174GO:0016051: carbohydrate biosynthetic process4.75E-02
175GO:0016310: phosphorylation4.97E-02
RankGO TermAdjusted P value
1GO:0036033: mediator complex binding0.00E+00
2GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
3GO:0004076: biotin synthase activity0.00E+00
4GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
5GO:0009029: tetraacyldisaccharide 4'-kinase activity0.00E+00
6GO:0050613: delta14-sterol reductase activity0.00E+00
7GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
8GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
9GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
10GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
11GO:1990534: thermospermine oxidase activity0.00E+00
12GO:0008017: microtubule binding2.19E-05
13GO:0000293: ferric-chelate reductase activity1.05E-04
14GO:0010347: L-galactose-1-phosphate phosphatase activity2.57E-04
15GO:0005227: calcium activated cation channel activity2.57E-04
16GO:0004733: pyridoxamine-phosphate oxidase activity2.57E-04
17GO:0010945: CoA pyrophosphatase activity2.57E-04
18GO:0052856: NADHX epimerase activity2.57E-04
19GO:0052857: NADPHX epimerase activity2.57E-04
20GO:0003777: microtubule motor activity3.04E-04
21GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity5.68E-04
22GO:0033741: adenylyl-sulfate reductase (glutathione) activity5.68E-04
23GO:0003938: IMP dehydrogenase activity5.68E-04
24GO:0052832: inositol monophosphate 3-phosphatase activity5.68E-04
25GO:0004817: cysteine-tRNA ligase activity5.68E-04
26GO:0009973: adenylyl-sulfate reductase activity5.68E-04
27GO:0080097: L-tryptophan:pyruvate aminotransferase activity5.68E-04
28GO:0008934: inositol monophosphate 1-phosphatase activity5.68E-04
29GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity5.68E-04
30GO:0052833: inositol monophosphate 4-phosphatase activity5.68E-04
31GO:0004829: threonine-tRNA ligase activity5.68E-04
32GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.68E-04
33GO:0004512: inositol-3-phosphate synthase activity5.68E-04
34GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.68E-04
35GO:0048531: beta-1,3-galactosyltransferase activity5.68E-04
36GO:0008728: GTP diphosphokinase activity5.68E-04
37GO:0042973: glucan endo-1,3-beta-D-glucosidase activity8.40E-04
38GO:0080054: low-affinity nitrate transmembrane transporter activity9.22E-04
39GO:0005504: fatty acid binding9.22E-04
40GO:0003913: DNA photolyase activity9.22E-04
41GO:0070402: NADPH binding9.22E-04
42GO:0052655: L-valine transaminase activity1.32E-03
43GO:0000254: C-4 methylsterol oxidase activity1.32E-03
44GO:0048027: mRNA 5'-UTR binding1.32E-03
45GO:0003999: adenine phosphoribosyltransferase activity1.32E-03
46GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.32E-03
47GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.32E-03
48GO:0052656: L-isoleucine transaminase activity1.32E-03
49GO:0009882: blue light photoreceptor activity1.32E-03
50GO:0052654: L-leucine transaminase activity1.32E-03
51GO:0030570: pectate lyase activity1.65E-03
52GO:0070628: proteasome binding1.76E-03
53GO:0045430: chalcone isomerase activity1.76E-03
54GO:0004084: branched-chain-amino-acid transaminase activity1.76E-03
55GO:0009044: xylan 1,4-beta-xylosidase activity1.76E-03
56GO:0046556: alpha-L-arabinofuranosidase activity1.76E-03
57GO:0016846: carbon-sulfur lyase activity2.25E-03
58GO:0010181: FMN binding2.43E-03
59GO:1990714: hydroxyproline O-galactosyltransferase activity2.77E-03
60GO:0031593: polyubiquitin binding2.77E-03
61GO:0000210: NAD+ diphosphatase activity2.77E-03
62GO:0035673: oligopeptide transmembrane transporter activity2.77E-03
63GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.77E-03
64GO:0016208: AMP binding2.77E-03
65GO:0042578: phosphoric ester hydrolase activity2.77E-03
66GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.77E-03
67GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.33E-03
68GO:0004017: adenylate kinase activity3.33E-03
69GO:0016832: aldehyde-lyase activity3.33E-03
70GO:0005261: cation channel activity3.33E-03
71GO:0009927: histidine phosphotransfer kinase activity3.33E-03
72GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.33E-03
73GO:0043022: ribosome binding4.56E-03
74GO:0030247: polysaccharide binding4.74E-03
75GO:0008236: serine-type peptidase activity4.99E-03
76GO:0008173: RNA methyltransferase activity5.22E-03
77GO:0003993: acid phosphatase activity6.96E-03
78GO:0005525: GTP binding7.69E-03
79GO:0008559: xenobiotic-transporting ATPase activity8.19E-03
80GO:0015198: oligopeptide transporter activity9.00E-03
81GO:0051537: 2 iron, 2 sulfur cluster binding9.29E-03
82GO:0000155: phosphorelay sensor kinase activity9.85E-03
83GO:0000175: 3'-5'-exoribonuclease activity9.85E-03
84GO:0008081: phosphoric diester hydrolase activity9.85E-03
85GO:0003774: motor activity1.07E-02
86GO:0008131: primary amine oxidase activity1.07E-02
87GO:0008146: sulfotransferase activity1.16E-02
88GO:0031409: pigment binding1.25E-02
89GO:0043130: ubiquitin binding1.35E-02
90GO:0005528: FK506 binding1.35E-02
91GO:0003714: transcription corepressor activity1.35E-02
92GO:0052689: carboxylic ester hydrolase activity1.46E-02
93GO:0019706: protein-cysteine S-palmitoyltransferase activity1.55E-02
94GO:0008408: 3'-5' exonuclease activity1.55E-02
95GO:0046872: metal ion binding1.62E-02
96GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.65E-02
97GO:0016746: transferase activity, transferring acyl groups1.70E-02
98GO:0016491: oxidoreductase activity1.77E-02
99GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.84E-02
100GO:0003924: GTPase activity2.10E-02
101GO:0016829: lyase activity2.25E-02
102GO:0004252: serine-type endopeptidase activity2.30E-02
103GO:0016853: isomerase activity2.32E-02
104GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.80E-02
105GO:0003684: damaged DNA binding2.93E-02
106GO:0016791: phosphatase activity2.93E-02
107GO:0016722: oxidoreductase activity, oxidizing metal ions3.06E-02
108GO:0005200: structural constituent of cytoskeleton3.06E-02
109GO:0003743: translation initiation factor activity3.34E-02
110GO:0016168: chlorophyll binding3.46E-02
111GO:0016887: ATPase activity3.62E-02
112GO:0042802: identical protein binding3.64E-02
113GO:0102483: scopolin beta-glucosidase activity3.73E-02
114GO:0004721: phosphoprotein phosphatase activity3.73E-02
115GO:0003824: catalytic activity3.95E-02
116GO:0016787: hydrolase activity3.99E-02
117GO:0030145: manganese ion binding4.45E-02
118GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.45E-02
119GO:0016788: hydrolase activity, acting on ester bonds4.50E-02
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Gene type



Gene DE type