GO Enrichment Analysis of Co-expressed Genes with
AT3G07340
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1900370: positive regulation of RNA interference | 0.00E+00 |
| 2 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 3 | GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA | 0.00E+00 |
| 4 | GO:0035563: positive regulation of chromatin binding | 0.00E+00 |
| 5 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 6 | GO:0080127: fruit septum development | 0.00E+00 |
| 7 | GO:0060966: regulation of gene silencing by RNA | 0.00E+00 |
| 8 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 9 | GO:0008064: regulation of actin polymerization or depolymerization | 0.00E+00 |
| 10 | GO:0070829: heterochromatin maintenance | 0.00E+00 |
| 11 | GO:0071360: cellular response to exogenous dsRNA | 0.00E+00 |
| 12 | GO:0051493: regulation of cytoskeleton organization | 0.00E+00 |
| 13 | GO:0040008: regulation of growth | 1.84E-05 |
| 14 | GO:1900368: regulation of RNA interference | 1.30E-04 |
| 15 | GO:0006999: nuclear pore organization | 1.30E-04 |
| 16 | GO:0036228: protein targeting to nuclear inner membrane | 1.30E-04 |
| 17 | GO:0033206: meiotic cytokinesis | 1.30E-04 |
| 18 | GO:0006390: transcription from mitochondrial promoter | 1.30E-04 |
| 19 | GO:0006264: mitochondrial DNA replication | 1.30E-04 |
| 20 | GO:0033259: plastid DNA replication | 1.30E-04 |
| 21 | GO:0006430: lysyl-tRNA aminoacylation | 1.30E-04 |
| 22 | GO:1901529: positive regulation of anion channel activity | 2.99E-04 |
| 23 | GO:2000071: regulation of defense response by callose deposition | 2.99E-04 |
| 24 | GO:1900111: positive regulation of histone H3-K9 dimethylation | 2.99E-04 |
| 25 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 4.92E-04 |
| 26 | GO:0060968: regulation of gene silencing | 4.92E-04 |
| 27 | GO:0032776: DNA methylation on cytosine | 4.92E-04 |
| 28 | GO:0033169: histone H3-K9 demethylation | 7.04E-04 |
| 29 | GO:0009102: biotin biosynthetic process | 7.04E-04 |
| 30 | GO:0009152: purine ribonucleotide biosynthetic process | 7.04E-04 |
| 31 | GO:0007276: gamete generation | 7.04E-04 |
| 32 | GO:0060964: regulation of gene silencing by miRNA | 7.04E-04 |
| 33 | GO:0080022: primary root development | 8.26E-04 |
| 34 | GO:0071249: cellular response to nitrate | 9.34E-04 |
| 35 | GO:0006808: regulation of nitrogen utilization | 9.34E-04 |
| 36 | GO:0016120: carotene biosynthetic process | 1.18E-03 |
| 37 | GO:0016131: brassinosteroid metabolic process | 1.18E-03 |
| 38 | GO:0016558: protein import into peroxisome matrix | 1.18E-03 |
| 39 | GO:0016123: xanthophyll biosynthetic process | 1.18E-03 |
| 40 | GO:0042793: transcription from plastid promoter | 1.45E-03 |
| 41 | GO:0003006: developmental process involved in reproduction | 1.45E-03 |
| 42 | GO:0009451: RNA modification | 1.67E-03 |
| 43 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 1.73E-03 |
| 44 | GO:2000033: regulation of seed dormancy process | 1.73E-03 |
| 45 | GO:0010019: chloroplast-nucleus signaling pathway | 1.73E-03 |
| 46 | GO:0048444: floral organ morphogenesis | 1.73E-03 |
| 47 | GO:1900056: negative regulation of leaf senescence | 2.04E-03 |
| 48 | GO:0010098: suspensor development | 2.04E-03 |
| 49 | GO:0006401: RNA catabolic process | 2.04E-03 |
| 50 | GO:0010374: stomatal complex development | 2.04E-03 |
| 51 | GO:0010928: regulation of auxin mediated signaling pathway | 2.36E-03 |
| 52 | GO:0005978: glycogen biosynthetic process | 2.36E-03 |
| 53 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.36E-03 |
| 54 | GO:0006353: DNA-templated transcription, termination | 2.36E-03 |
| 55 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 2.36E-03 |
| 56 | GO:0006402: mRNA catabolic process | 2.36E-03 |
| 57 | GO:0010492: maintenance of shoot apical meristem identity | 2.36E-03 |
| 58 | GO:0009793: embryo development ending in seed dormancy | 2.50E-03 |
| 59 | GO:0009867: jasmonic acid mediated signaling pathway | 2.54E-03 |
| 60 | GO:0010233: phloem transport | 2.69E-03 |
| 61 | GO:0010052: guard cell differentiation | 2.69E-03 |
| 62 | GO:0010100: negative regulation of photomorphogenesis | 2.69E-03 |
| 63 | GO:0006607: NLS-bearing protein import into nucleus | 3.04E-03 |
| 64 | GO:0048507: meristem development | 3.04E-03 |
| 65 | GO:0031425: chloroplast RNA processing | 3.41E-03 |
| 66 | GO:0006259: DNA metabolic process | 3.79E-03 |
| 67 | GO:0030422: production of siRNA involved in RNA interference | 3.79E-03 |
| 68 | GO:0048829: root cap development | 3.79E-03 |
| 69 | GO:0009641: shade avoidance | 3.79E-03 |
| 70 | GO:0006949: syncytium formation | 3.79E-03 |
| 71 | GO:0006260: DNA replication | 3.93E-03 |
| 72 | GO:0009664: plant-type cell wall organization | 4.08E-03 |
| 73 | GO:0009682: induced systemic resistance | 4.18E-03 |
| 74 | GO:0006265: DNA topological change | 4.18E-03 |
| 75 | GO:0006364: rRNA processing | 4.38E-03 |
| 76 | GO:0010582: floral meristem determinacy | 4.58E-03 |
| 77 | GO:0010152: pollen maturation | 4.58E-03 |
| 78 | GO:0010588: cotyledon vascular tissue pattern formation | 5.00E-03 |
| 79 | GO:0006302: double-strand break repair | 5.44E-03 |
| 80 | GO:0048467: gynoecium development | 5.44E-03 |
| 81 | GO:0006270: DNA replication initiation | 5.44E-03 |
| 82 | GO:0009887: animal organ morphogenesis | 5.44E-03 |
| 83 | GO:0009934: regulation of meristem structural organization | 5.44E-03 |
| 84 | GO:0080188: RNA-directed DNA methylation | 5.88E-03 |
| 85 | GO:0006281: DNA repair | 6.08E-03 |
| 86 | GO:0009863: salicylic acid mediated signaling pathway | 6.81E-03 |
| 87 | GO:0010187: negative regulation of seed germination | 6.81E-03 |
| 88 | GO:2000377: regulation of reactive oxygen species metabolic process | 6.81E-03 |
| 89 | GO:0051302: regulation of cell division | 7.30E-03 |
| 90 | GO:0006418: tRNA aminoacylation for protein translation | 7.30E-03 |
| 91 | GO:0006306: DNA methylation | 7.79E-03 |
| 92 | GO:0003333: amino acid transmembrane transport | 7.79E-03 |
| 93 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 8.30E-03 |
| 94 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 8.82E-03 |
| 95 | GO:0048443: stamen development | 9.35E-03 |
| 96 | GO:0042127: regulation of cell proliferation | 9.35E-03 |
| 97 | GO:0051028: mRNA transport | 9.90E-03 |
| 98 | GO:0008033: tRNA processing | 1.04E-02 |
| 99 | GO:0010501: RNA secondary structure unwinding | 1.04E-02 |
| 100 | GO:0010087: phloem or xylem histogenesis | 1.04E-02 |
| 101 | GO:0010118: stomatal movement | 1.04E-02 |
| 102 | GO:0010268: brassinosteroid homeostasis | 1.10E-02 |
| 103 | GO:0010305: leaf vascular tissue pattern formation | 1.10E-02 |
| 104 | GO:0008360: regulation of cell shape | 1.10E-02 |
| 105 | GO:0009958: positive gravitropism | 1.10E-02 |
| 106 | GO:0009741: response to brassinosteroid | 1.10E-02 |
| 107 | GO:0007059: chromosome segregation | 1.16E-02 |
| 108 | GO:0009791: post-embryonic development | 1.22E-02 |
| 109 | GO:0009749: response to glucose | 1.22E-02 |
| 110 | GO:0019252: starch biosynthetic process | 1.22E-02 |
| 111 | GO:0080156: mitochondrial mRNA modification | 1.28E-02 |
| 112 | GO:0002229: defense response to oomycetes | 1.28E-02 |
| 113 | GO:0006635: fatty acid beta-oxidation | 1.28E-02 |
| 114 | GO:0007264: small GTPase mediated signal transduction | 1.34E-02 |
| 115 | GO:0032502: developmental process | 1.34E-02 |
| 116 | GO:0019760: glucosinolate metabolic process | 1.46E-02 |
| 117 | GO:0006464: cellular protein modification process | 1.46E-02 |
| 118 | GO:0009828: plant-type cell wall loosening | 1.46E-02 |
| 119 | GO:0045893: positive regulation of transcription, DNA-templated | 1.50E-02 |
| 120 | GO:0010029: regulation of seed germination | 1.73E-02 |
| 121 | GO:0009627: systemic acquired resistance | 1.79E-02 |
| 122 | GO:0015995: chlorophyll biosynthetic process | 1.86E-02 |
| 123 | GO:0016311: dephosphorylation | 1.93E-02 |
| 124 | GO:0048481: plant ovule development | 2.00E-02 |
| 125 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.14E-02 |
| 126 | GO:0010218: response to far red light | 2.15E-02 |
| 127 | GO:0048527: lateral root development | 2.22E-02 |
| 128 | GO:0006865: amino acid transport | 2.29E-02 |
| 129 | GO:0007165: signal transduction | 2.41E-02 |
| 130 | GO:0051707: response to other organism | 2.84E-02 |
| 131 | GO:0031347: regulation of defense response | 3.25E-02 |
| 132 | GO:0042538: hyperosmotic salinity response | 3.34E-02 |
| 133 | GO:0009585: red, far-red light phototransduction | 3.51E-02 |
| 134 | GO:0006417: regulation of translation | 3.77E-02 |
| 135 | GO:0048367: shoot system development | 4.04E-02 |
| 136 | GO:0009620: response to fungus | 4.23E-02 |
| 137 | GO:0009734: auxin-activated signaling pathway | 4.30E-02 |
| 138 | GO:0009740: gibberellic acid mediated signaling pathway | 4.32E-02 |
| 139 | GO:0006396: RNA processing | 4.60E-02 |
| 140 | GO:0051726: regulation of cell cycle | 4.70E-02 |
| 141 | GO:0009742: brassinosteroid mediated signaling pathway | 4.70E-02 |
| 142 | GO:0009908: flower development | 4.88E-02 |
| 143 | GO:0006810: transport | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 2 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 3 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 4 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 5 | GO:0004479: methionyl-tRNA formyltransferase activity | 0.00E+00 |
| 6 | GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity | 0.00E+00 |
| 7 | GO:0004835: tubulin-tyrosine ligase activity | 0.00E+00 |
| 8 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 9 | GO:0004824: lysine-tRNA ligase activity | 1.30E-04 |
| 10 | GO:0008395: steroid hydroxylase activity | 1.30E-04 |
| 11 | GO:0034335: DNA supercoiling activity | 1.30E-04 |
| 12 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 1.30E-04 |
| 13 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 1.30E-04 |
| 14 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 2.99E-04 |
| 15 | GO:0032454: histone demethylase activity (H3-K9 specific) | 2.99E-04 |
| 16 | GO:0003723: RNA binding | 4.18E-04 |
| 17 | GO:0043169: cation binding | 4.92E-04 |
| 18 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 4.92E-04 |
| 19 | GO:0008864: formyltetrahydrofolate deformylase activity | 4.92E-04 |
| 20 | GO:0003916: DNA topoisomerase activity | 7.04E-04 |
| 21 | GO:0042803: protein homodimerization activity | 9.03E-04 |
| 22 | GO:0010011: auxin binding | 9.34E-04 |
| 23 | GO:0008409: 5'-3' exonuclease activity | 9.34E-04 |
| 24 | GO:0010328: auxin influx transmembrane transporter activity | 9.34E-04 |
| 25 | GO:0004519: endonuclease activity | 1.30E-03 |
| 26 | GO:0004556: alpha-amylase activity | 1.45E-03 |
| 27 | GO:0003688: DNA replication origin binding | 1.45E-03 |
| 28 | GO:0017056: structural constituent of nuclear pore | 2.36E-03 |
| 29 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 2.69E-03 |
| 30 | GO:0000989: transcription factor activity, transcription factor binding | 3.04E-03 |
| 31 | GO:0005487: nucleocytoplasmic transporter activity | 3.41E-03 |
| 32 | GO:0031490: chromatin DNA binding | 3.41E-03 |
| 33 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 4.18E-03 |
| 34 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 4.58E-03 |
| 35 | GO:0009982: pseudouridine synthase activity | 5.00E-03 |
| 36 | GO:0000175: 3'-5'-exoribonuclease activity | 5.00E-03 |
| 37 | GO:0003725: double-stranded RNA binding | 5.00E-03 |
| 38 | GO:0003712: transcription cofactor activity | 5.88E-03 |
| 39 | GO:0003887: DNA-directed DNA polymerase activity | 6.34E-03 |
| 40 | GO:0008026: ATP-dependent helicase activity | 6.59E-03 |
| 41 | GO:0008408: 3'-5' exonuclease activity | 7.79E-03 |
| 42 | GO:0004812: aminoacyl-tRNA ligase activity | 9.90E-03 |
| 43 | GO:0016887: ATPase activity | 1.06E-02 |
| 44 | GO:0019901: protein kinase binding | 1.22E-02 |
| 45 | GO:0048038: quinone binding | 1.28E-02 |
| 46 | GO:0016791: phosphatase activity | 1.46E-02 |
| 47 | GO:0003677: DNA binding | 1.46E-02 |
| 48 | GO:0004004: ATP-dependent RNA helicase activity | 1.86E-02 |
| 49 | GO:0005096: GTPase activator activity | 2.07E-02 |
| 50 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.15E-02 |
| 51 | GO:0005515: protein binding | 2.24E-02 |
| 52 | GO:0003697: single-stranded DNA binding | 2.37E-02 |
| 53 | GO:0003993: acid phosphatase activity | 2.45E-02 |
| 54 | GO:0004722: protein serine/threonine phosphatase activity | 2.72E-02 |
| 55 | GO:0043621: protein self-association | 3.00E-02 |
| 56 | GO:0015293: symporter activity | 3.08E-02 |
| 57 | GO:0005524: ATP binding | 3.26E-02 |
| 58 | GO:0043565: sequence-specific DNA binding | 3.32E-02 |
| 59 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.51E-02 |
| 60 | GO:0016298: lipase activity | 3.60E-02 |
| 61 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 3.73E-02 |
| 62 | GO:0015171: amino acid transmembrane transporter activity | 3.77E-02 |
| 63 | GO:0016874: ligase activity | 4.32E-02 |
| 64 | GO:0003779: actin binding | 4.41E-02 |
| 65 | GO:0004386: helicase activity | 4.80E-02 |
| 66 | GO:0004672: protein kinase activity | 4.90E-02 |