Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G07200

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031222: arabinan catabolic process0.00E+00
2GO:0045014: negative regulation of transcription by glucose0.00E+00
3GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process0.00E+00
4GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
5GO:0090627: plant epidermal cell differentiation0.00E+00
6GO:0009606: tropism0.00E+00
7GO:0090322: regulation of superoxide metabolic process0.00E+00
8GO:1903224: regulation of endodermal cell differentiation0.00E+00
9GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
10GO:0045184: establishment of protein localization0.00E+00
11GO:0080127: fruit septum development0.00E+00
12GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0046620: regulation of organ growth1.28E-08
14GO:0009451: RNA modification1.63E-06
15GO:0009734: auxin-activated signaling pathway9.94E-06
16GO:0006518: peptide metabolic process5.75E-05
17GO:0009657: plastid organization6.95E-05
18GO:0040008: regulation of growth8.57E-05
19GO:0010306: rhamnogalacturonan II biosynthetic process1.21E-04
20GO:1900865: chloroplast RNA modification1.21E-04
21GO:0009733: response to auxin1.73E-04
22GO:2000038: regulation of stomatal complex development2.05E-04
23GO:0009926: auxin polar transport2.32E-04
24GO:0009913: epidermal cell differentiation4.33E-04
25GO:0042793: transcription from plastid promoter4.33E-04
26GO:0009416: response to light stimulus4.41E-04
27GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.36E-04
28GO:1901259: chloroplast rRNA processing5.75E-04
29GO:0015904: tetracycline transport6.37E-04
30GO:0034757: negative regulation of iron ion transport6.37E-04
31GO:0042659: regulation of cell fate specification6.37E-04
32GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.37E-04
33GO:0070509: calcium ion import6.37E-04
34GO:0090558: plant epidermis development6.37E-04
35GO:1903866: palisade mesophyll development6.37E-04
36GO:0010063: positive regulation of trichoblast fate specification6.37E-04
37GO:0010480: microsporocyte differentiation6.37E-04
38GO:0035987: endodermal cell differentiation6.37E-04
39GO:0006436: tryptophanyl-tRNA aminoacylation6.37E-04
40GO:0048437: floral organ development7.35E-04
41GO:0007389: pattern specification process1.11E-03
42GO:0048868: pollen tube development1.23E-03
43GO:0000902: cell morphogenesis1.33E-03
44GO:2000123: positive regulation of stomatal complex development1.37E-03
45GO:1902326: positive regulation of chlorophyll biosynthetic process1.37E-03
46GO:0010569: regulation of double-strand break repair via homologous recombination1.37E-03
47GO:0010271: regulation of chlorophyll catabolic process1.37E-03
48GO:0018026: peptidyl-lysine monomethylation1.37E-03
49GO:0009662: etioplast organization1.37E-03
50GO:1900033: negative regulation of trichome patterning1.37E-03
51GO:1904143: positive regulation of carotenoid biosynthetic process1.37E-03
52GO:0080009: mRNA methylation1.37E-03
53GO:0031425: chloroplast RNA processing1.57E-03
54GO:0006535: cysteine biosynthetic process from serine1.84E-03
55GO:0048829: root cap development1.84E-03
56GO:0010252: auxin homeostasis2.06E-03
57GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.26E-03
58GO:0045910: negative regulation of DNA recombination2.26E-03
59GO:0090708: specification of plant organ axis polarity2.26E-03
60GO:0080117: secondary growth2.26E-03
61GO:0044210: 'de novo' CTP biosynthetic process2.26E-03
62GO:0090391: granum assembly2.26E-03
63GO:0042780: tRNA 3'-end processing2.26E-03
64GO:0001578: microtubule bundle formation2.26E-03
65GO:0045037: protein import into chloroplast stroma2.44E-03
66GO:0010588: cotyledon vascular tissue pattern formation2.78E-03
67GO:0010411: xyloglucan metabolic process3.19E-03
68GO:1902476: chloride transmembrane transport3.28E-03
69GO:0010071: root meristem specification3.28E-03
70GO:0051513: regulation of monopolar cell growth3.28E-03
71GO:0010239: chloroplast mRNA processing3.28E-03
72GO:0019048: modulation by virus of host morphology or physiology3.28E-03
73GO:0046739: transport of virus in multicellular host3.28E-03
74GO:0031048: chromatin silencing by small RNA3.28E-03
75GO:0051289: protein homotetramerization3.28E-03
76GO:0016556: mRNA modification3.28E-03
77GO:0080188: RNA-directed DNA methylation3.52E-03
78GO:0048481: plant ovule development3.64E-03
79GO:0019344: cysteine biosynthetic process4.36E-03
80GO:1900864: mitochondrial RNA modification4.43E-03
81GO:0042274: ribosomal small subunit biogenesis4.43E-03
82GO:0051322: anaphase4.43E-03
83GO:0030104: water homeostasis4.43E-03
84GO:0006221: pyrimidine nucleotide biosynthetic process4.43E-03
85GO:0051567: histone H3-K9 methylation4.43E-03
86GO:0006021: inositol biosynthetic process4.43E-03
87GO:0006808: regulation of nitrogen utilization4.43E-03
88GO:0006479: protein methylation4.43E-03
89GO:0048629: trichome patterning4.43E-03
90GO:0009658: chloroplast organization4.44E-03
91GO:0006418: tRNA aminoacylation for protein translation4.82E-03
92GO:0003333: amino acid transmembrane transport5.30E-03
93GO:0016998: cell wall macromolecule catabolic process5.30E-03
94GO:0032876: negative regulation of DNA endoreduplication5.69E-03
95GO:0030308: negative regulation of cell growth5.69E-03
96GO:0010375: stomatal complex patterning5.69E-03
97GO:0080110: sporopollenin biosynthetic process5.69E-03
98GO:0048497: maintenance of floral organ identity5.69E-03
99GO:0009107: lipoate biosynthetic process5.69E-03
100GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.35E-03
101GO:0009790: embryo development6.37E-03
102GO:0009959: negative gravitropism7.06E-03
103GO:0006655: phosphatidylglycerol biosynthetic process7.06E-03
104GO:0016554: cytidine to uridine editing7.06E-03
105GO:1902456: regulation of stomatal opening7.06E-03
106GO:0048831: regulation of shoot system development7.06E-03
107GO:0010315: auxin efflux7.06E-03
108GO:0003006: developmental process involved in reproduction7.06E-03
109GO:0018258: protein O-linked glycosylation via hydroxyproline7.06E-03
110GO:0016458: gene silencing7.06E-03
111GO:0009643: photosynthetic acclimation7.06E-03
112GO:0050665: hydrogen peroxide biosynthetic process7.06E-03
113GO:0010405: arabinogalactan protein metabolic process7.06E-03
114GO:0042546: cell wall biogenesis7.19E-03
115GO:0010087: phloem or xylem histogenesis8.11E-03
116GO:2000037: regulation of stomatal complex patterning8.54E-03
117GO:0010310: regulation of hydrogen peroxide metabolic process8.54E-03
118GO:2000067: regulation of root morphogenesis8.54E-03
119GO:0042026: protein refolding8.54E-03
120GO:0009082: branched-chain amino acid biosynthetic process8.54E-03
121GO:0006458: 'de novo' protein folding8.54E-03
122GO:0009942: longitudinal axis specification8.54E-03
123GO:0048509: regulation of meristem development8.54E-03
124GO:0009099: valine biosynthetic process8.54E-03
125GO:0030488: tRNA methylation8.54E-03
126GO:0009854: oxidative photosynthetic carbon pathway8.54E-03
127GO:0009741: response to brassinosteroid8.75E-03
128GO:0010305: leaf vascular tissue pattern formation8.75E-03
129GO:0016567: protein ubiquitination9.59E-03
130GO:0006508: proteolysis9.85E-03
131GO:0006955: immune response1.01E-02
132GO:0048528: post-embryonic root development1.01E-02
133GO:0006821: chloride transport1.01E-02
134GO:0015937: coenzyme A biosynthetic process1.01E-02
135GO:0048825: cotyledon development1.01E-02
136GO:0009793: embryo development ending in seed dormancy1.01E-02
137GO:0010103: stomatal complex morphogenesis1.01E-02
138GO:0010583: response to cyclopentenone1.16E-02
139GO:0032502: developmental process1.16E-02
140GO:0001522: pseudouridine synthesis1.18E-02
141GO:0048766: root hair initiation1.18E-02
142GO:0055075: potassium ion homeostasis1.18E-02
143GO:0000105: histidine biosynthetic process1.18E-02
144GO:0048316: seed development1.29E-02
145GO:0019430: removal of superoxide radicals1.36E-02
146GO:0009827: plant-type cell wall modification1.36E-02
147GO:0010497: plasmodesmata-mediated intercellular transport1.36E-02
148GO:0009097: isoleucine biosynthetic process1.36E-02
149GO:0010204: defense response signaling pathway, resistance gene-independent1.36E-02
150GO:0032544: plastid translation1.36E-02
151GO:0009553: embryo sac development1.51E-02
152GO:0006098: pentose-phosphate shunt1.54E-02
153GO:0048507: meristem development1.54E-02
154GO:0000373: Group II intron splicing1.54E-02
155GO:0048589: developmental growth1.54E-02
156GO:0001666: response to hypoxia1.58E-02
157GO:0010027: thylakoid membrane organization1.58E-02
158GO:0009742: brassinosteroid mediated signaling pathway1.69E-02
159GO:0009638: phototropism1.74E-02
160GO:0042761: very long-chain fatty acid biosynthetic process1.74E-02
161GO:2000280: regulation of root development1.74E-02
162GO:0006298: mismatch repair1.94E-02
163GO:0006259: DNA metabolic process1.94E-02
164GO:0019538: protein metabolic process1.94E-02
165GO:0030422: production of siRNA involved in RNA interference1.94E-02
166GO:0045036: protein targeting to chloroplast1.94E-02
167GO:0009641: shade avoidance1.94E-02
168GO:0010015: root morphogenesis2.15E-02
169GO:0006265: DNA topological change2.15E-02
170GO:0009750: response to fructose2.15E-02
171GO:0048229: gametophyte development2.15E-02
172GO:0000160: phosphorelay signal transduction system2.17E-02
173GO:0080167: response to karrikin2.21E-02
174GO:0008361: regulation of cell size2.37E-02
175GO:0006790: sulfur compound metabolic process2.37E-02
176GO:0010152: pollen maturation2.37E-02
177GO:0016024: CDP-diacylglycerol biosynthetic process2.37E-02
178GO:0010582: floral meristem determinacy2.37E-02
179GO:0006865: amino acid transport2.50E-02
180GO:0006094: gluconeogenesis2.60E-02
181GO:0009767: photosynthetic electron transport chain2.60E-02
182GO:0010102: lateral root morphogenesis2.60E-02
183GO:0009785: blue light signaling pathway2.60E-02
184GO:0009691: cytokinin biosynthetic process2.60E-02
185GO:0010075: regulation of meristem growth2.60E-02
186GO:0009934: regulation of meristem structural organization2.83E-02
187GO:0048467: gynoecium development2.83E-02
188GO:0010207: photosystem II assembly2.83E-02
189GO:0070588: calcium ion transmembrane transport3.07E-02
190GO:0046854: phosphatidylinositol phosphorylation3.07E-02
191GO:0006833: water transport3.32E-02
192GO:0009555: pollen development3.38E-02
193GO:0080147: root hair cell development3.57E-02
194GO:0009739: response to gibberellin3.60E-02
195GO:0051302: regulation of cell division3.83E-02
196GO:0010073: meristem maintenance3.83E-02
197GO:0061077: chaperone-mediated protein folding4.10E-02
198GO:0006306: DNA methylation4.10E-02
199GO:0031408: oxylipin biosynthetic process4.10E-02
200GO:0031348: negative regulation of defense response4.37E-02
201GO:0009736: cytokinin-activated signaling pathway4.53E-02
202GO:0071215: cellular response to abscisic acid stimulus4.65E-02
203GO:0010082: regulation of root meristem growth4.65E-02
204GO:0051603: proteolysis involved in cellular protein catabolic process4.69E-02
205GO:0010584: pollen exine formation4.93E-02
206GO:0048443: stamen development4.93E-02
207GO:0006284: base-excision repair4.93E-02
208GO:0042127: regulation of cell proliferation4.93E-02
RankGO TermAdjusted P value
1GO:0016018: cyclosporin A binding0.00E+00
2GO:0070009: serine-type aminopeptidase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity0.00E+00
5GO:0071633: dihydroceramidase activity0.00E+00
6GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
7GO:0004401: histidinol-phosphatase activity0.00E+00
8GO:0004519: endonuclease activity4.45E-08
9GO:0003723: RNA binding4.10E-05
10GO:0017150: tRNA dihydrouridine synthase activity5.75E-05
11GO:0001872: (1->3)-beta-D-glucan binding1.21E-04
12GO:0004124: cysteine synthase activity5.75E-04
13GO:0004016: adenylate cyclase activity6.37E-04
14GO:0004632: phosphopantothenate--cysteine ligase activity6.37E-04
15GO:0042834: peptidoglycan binding6.37E-04
16GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.37E-04
17GO:0016274: protein-arginine N-methyltransferase activity6.37E-04
18GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.37E-04
19GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.37E-04
20GO:0052381: tRNA dimethylallyltransferase activity6.37E-04
21GO:0004160: dihydroxy-acid dehydratase activity6.37E-04
22GO:0004830: tryptophan-tRNA ligase activity6.37E-04
23GO:0010347: L-galactose-1-phosphate phosphatase activity6.37E-04
24GO:0004222: metalloendopeptidase activity7.20E-04
25GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.20E-04
26GO:0016415: octanoyltransferase activity1.37E-03
27GO:0052832: inositol monophosphate 3-phosphatase activity1.37E-03
28GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.37E-03
29GO:0008805: carbon-monoxide oxygenase activity1.37E-03
30GO:0008934: inositol monophosphate 1-phosphatase activity1.37E-03
31GO:0008493: tetracycline transporter activity1.37E-03
32GO:0052833: inositol monophosphate 4-phosphatase activity1.37E-03
33GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.37E-03
34GO:0003988: acetyl-CoA C-acyltransferase activity1.37E-03
35GO:0009884: cytokinin receptor activity1.37E-03
36GO:0017118: lipoyltransferase activity1.37E-03
37GO:0009672: auxin:proton symporter activity1.57E-03
38GO:0016762: xyloglucan:xyloglucosyl transferase activity1.61E-03
39GO:0042781: 3'-tRNA processing endoribonuclease activity2.26E-03
40GO:0016805: dipeptidase activity2.26E-03
41GO:0005034: osmosensor activity2.26E-03
42GO:0003725: double-stranded RNA binding2.78E-03
43GO:0010329: auxin efflux transmembrane transporter activity2.78E-03
44GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.14E-03
45GO:0016798: hydrolase activity, acting on glycosyl bonds3.19E-03
46GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity3.28E-03
47GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity3.28E-03
48GO:0009041: uridylate kinase activity3.28E-03
49GO:0003883: CTP synthase activity3.28E-03
50GO:0035197: siRNA binding3.28E-03
51GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity3.28E-03
52GO:0010011: auxin binding4.43E-03
53GO:0016836: hydro-lyase activity4.43E-03
54GO:0010328: auxin influx transmembrane transporter activity4.43E-03
55GO:0005253: anion channel activity4.43E-03
56GO:0004930: G-protein coupled receptor activity4.43E-03
57GO:0008891: glycolate oxidase activity4.43E-03
58GO:0046556: alpha-L-arabinofuranosidase activity4.43E-03
59GO:0016279: protein-lysine N-methyltransferase activity4.43E-03
60GO:0043424: protein histidine kinase binding4.82E-03
61GO:0019843: rRNA binding5.03E-03
62GO:0008725: DNA-3-methyladenine glycosylase activity5.69E-03
63GO:0004888: transmembrane signaling receptor activity5.69E-03
64GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.69E-03
65GO:0030983: mismatched DNA binding7.06E-03
66GO:0004605: phosphatidate cytidylyltransferase activity7.06E-03
67GO:0080030: methyl indole-3-acetate esterase activity7.06E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity7.06E-03
69GO:0004332: fructose-bisphosphate aldolase activity7.06E-03
70GO:0004784: superoxide dismutase activity7.06E-03
71GO:0005247: voltage-gated chloride channel activity7.06E-03
72GO:0004812: aminoacyl-tRNA ligase activity7.49E-03
73GO:0008195: phosphatidate phosphatase activity8.54E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity8.54E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.54E-03
76GO:0004656: procollagen-proline 4-dioxygenase activity8.54E-03
77GO:0019900: kinase binding8.54E-03
78GO:0004871: signal transducer activity9.63E-03
79GO:0008173: RNA methyltransferase activity1.36E-02
80GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.36E-02
81GO:0004650: polygalacturonase activity1.40E-02
82GO:0008237: metallopeptidase activity1.40E-02
83GO:0008168: methyltransferase activity1.51E-02
84GO:0016788: hydrolase activity, acting on ester bonds1.64E-02
85GO:0030247: polysaccharide binding1.86E-02
86GO:0004673: protein histidine kinase activity1.94E-02
87GO:0044183: protein binding involved in protein folding2.15E-02
88GO:0004521: endoribonuclease activity2.37E-02
89GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.46E-02
90GO:0005262: calcium channel activity2.60E-02
91GO:0009982: pseudouridine synthase activity2.60E-02
92GO:0004022: alcohol dehydrogenase (NAD) activity2.60E-02
93GO:0031072: heat shock protein binding2.60E-02
94GO:0000155: phosphorelay sensor kinase activity2.60E-02
95GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.62E-02
96GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.88E-02
97GO:0051539: 4 iron, 4 sulfur cluster binding2.98E-02
98GO:0004185: serine-type carboxypeptidase activity3.37E-02
99GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding3.37E-02
100GO:0031418: L-ascorbic acid binding3.57E-02
101GO:0043621: protein self-association3.65E-02
102GO:0015293: symporter activity3.79E-02
103GO:0004176: ATP-dependent peptidase activity4.10E-02
104GO:0033612: receptor serine/threonine kinase binding4.10E-02
105GO:0008408: 3'-5' exonuclease activity4.10E-02
106GO:0030570: pectate lyase activity4.65E-02
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Gene type



Gene DE type