Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G06483

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0017038: protein import0.00E+00
2GO:0031054: pre-miRNA processing0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:0090279: regulation of calcium ion import0.00E+00
6GO:0051924: regulation of calcium ion transport0.00E+00
7GO:0042407: cristae formation0.00E+00
8GO:0015882: L-ascorbic acid transport0.00E+00
9GO:0071474: cellular hyperosmotic response0.00E+00
10GO:0018023: peptidyl-lysine trimethylation0.00E+00
11GO:2001294: malonyl-CoA catabolic process0.00E+00
12GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
13GO:0097275: cellular ammonia homeostasis0.00E+00
14GO:0006021: inositol biosynthetic process1.23E-06
15GO:0015995: chlorophyll biosynthetic process1.90E-05
16GO:0016120: carotene biosynthetic process1.76E-04
17GO:0009904: chloroplast accumulation movement1.76E-04
18GO:0045038: protein import into chloroplast thylakoid membrane1.76E-04
19GO:0046855: inositol phosphate dephosphorylation2.51E-04
20GO:0009903: chloroplast avoidance movement3.37E-04
21GO:0010362: negative regulation of anion channel activity by blue light4.45E-04
22GO:0009090: homoserine biosynthetic process4.45E-04
23GO:0015969: guanosine tetraphosphate metabolic process4.45E-04
24GO:0031426: polycistronic mRNA processing4.45E-04
25GO:0043489: RNA stabilization4.45E-04
26GO:0000481: maturation of 5S rRNA4.45E-04
27GO:0006659: phosphatidylserine biosynthetic process4.45E-04
28GO:0043686: co-translational protein modification4.45E-04
29GO:0043087: regulation of GTPase activity4.45E-04
30GO:0046167: glycerol-3-phosphate biosynthetic process4.45E-04
31GO:1902458: positive regulation of stomatal opening4.45E-04
32GO:0010028: xanthophyll cycle4.45E-04
33GO:0034337: RNA folding4.45E-04
34GO:2000070: regulation of response to water deprivation5.41E-04
35GO:0007018: microtubule-based movement6.86E-04
36GO:0010206: photosystem II repair7.90E-04
37GO:0016032: viral process8.89E-04
38GO:1900865: chloroplast RNA modification9.32E-04
39GO:0030187: melatonin biosynthetic process9.61E-04
40GO:0010541: acropetal auxin transport9.61E-04
41GO:0007154: cell communication9.61E-04
42GO:0018026: peptidyl-lysine monomethylation9.61E-04
43GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation9.61E-04
44GO:0006423: cysteinyl-tRNA aminoacylation9.61E-04
45GO:0006435: threonyl-tRNA aminoacylation9.61E-04
46GO:0006650: glycerophospholipid metabolic process9.61E-04
47GO:0010155: regulation of proton transport9.61E-04
48GO:1903426: regulation of reactive oxygen species biosynthetic process9.61E-04
49GO:0006568: tryptophan metabolic process9.61E-04
50GO:0015804: neutral amino acid transport9.61E-04
51GO:0051262: protein tetramerization9.61E-04
52GO:0009416: response to light stimulus1.25E-03
53GO:0055114: oxidation-reduction process1.36E-03
54GO:0006790: sulfur compound metabolic process1.43E-03
55GO:0000913: preprophase band assembly1.57E-03
56GO:0033591: response to L-ascorbic acid1.57E-03
57GO:0031022: nuclear migration along microfilament1.57E-03
58GO:0046168: glycerol-3-phosphate catabolic process1.57E-03
59GO:0010589: leaf proximal/distal pattern formation1.57E-03
60GO:0009405: pathogenesis1.57E-03
61GO:0080055: low-affinity nitrate transport1.57E-03
62GO:0051604: protein maturation1.57E-03
63GO:0010160: formation of animal organ boundary1.57E-03
64GO:0006753: nucleoside phosphate metabolic process1.57E-03
65GO:0045493: xylan catabolic process1.57E-03
66GO:0010207: photosystem II assembly1.83E-03
67GO:0010143: cutin biosynthetic process1.83E-03
68GO:0009266: response to temperature stimulus1.83E-03
69GO:0046854: phosphatidylinositol phosphorylation2.05E-03
70GO:0009152: purine ribonucleotide biosynthetic process2.27E-03
71GO:0046653: tetrahydrofolate metabolic process2.27E-03
72GO:0010239: chloroplast mRNA processing2.27E-03
73GO:0009647: skotomorphogenesis2.27E-03
74GO:0043481: anthocyanin accumulation in tissues in response to UV light2.27E-03
75GO:0006072: glycerol-3-phosphate metabolic process2.27E-03
76GO:0046739: transport of virus in multicellular host2.27E-03
77GO:0006168: adenine salvage2.27E-03
78GO:0006164: purine nucleotide biosynthetic process2.27E-03
79GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.27E-03
80GO:0009067: aspartate family amino acid biosynthetic process2.27E-03
81GO:0006166: purine ribonucleoside salvage2.27E-03
82GO:0006020: inositol metabolic process2.27E-03
83GO:0009102: biotin biosynthetic process2.27E-03
84GO:1901000: regulation of response to salt stress2.27E-03
85GO:0042753: positive regulation of circadian rhythm2.29E-03
86GO:0009765: photosynthesis, light harvesting3.05E-03
87GO:0035279: mRNA cleavage involved in gene silencing by miRNA3.05E-03
88GO:0008295: spermidine biosynthetic process3.05E-03
89GO:0010109: regulation of photosynthesis3.05E-03
90GO:0006564: L-serine biosynthetic process3.90E-03
91GO:0010236: plastoquinone biosynthetic process3.90E-03
92GO:0031365: N-terminal protein amino acid modification3.90E-03
93GO:0016123: xanthophyll biosynthetic process3.90E-03
94GO:0044209: AMP salvage3.90E-03
95GO:0016117: carotenoid biosynthetic process4.34E-03
96GO:0060918: auxin transport4.83E-03
97GO:0048831: regulation of shoot system development4.83E-03
98GO:0016554: cytidine to uridine editing4.83E-03
99GO:0010190: cytochrome b6f complex assembly4.83E-03
100GO:0045962: positive regulation of development, heterochronic4.83E-03
101GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.83E-03
102GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.83E-03
103GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.83E-03
104GO:0009958: positive gravitropism5.06E-03
105GO:0042372: phylloquinone biosynthetic process5.83E-03
106GO:0048280: vesicle fusion with Golgi apparatus5.83E-03
107GO:0030488: tRNA methylation5.83E-03
108GO:0009088: threonine biosynthetic process5.83E-03
109GO:0009648: photoperiodism5.83E-03
110GO:0009791: post-embryonic development5.84E-03
111GO:0008654: phospholipid biosynthetic process5.84E-03
112GO:0010583: response to cyclopentenone6.68E-03
113GO:0015937: coenzyme A biosynthetic process6.89E-03
114GO:0006400: tRNA modification6.89E-03
115GO:0035196: production of miRNAs involved in gene silencing by miRNA6.89E-03
116GO:0009639: response to red or far red light7.59E-03
117GO:0007155: cell adhesion8.02E-03
118GO:0006605: protein targeting8.02E-03
119GO:0010078: maintenance of root meristem identity8.02E-03
120GO:0032508: DNA duplex unwinding8.02E-03
121GO:0016559: peroxisome fission8.02E-03
122GO:0016126: sterol biosynthetic process9.07E-03
123GO:0010027: thylakoid membrane organization9.07E-03
124GO:0015996: chlorophyll catabolic process9.21E-03
125GO:0007186: G-protein coupled receptor signaling pathway9.21E-03
126GO:0043562: cellular response to nitrogen levels9.21E-03
127GO:0006783: heme biosynthetic process1.05E-02
128GO:0048507: meristem development1.05E-02
129GO:0006189: 'de novo' IMP biosynthetic process1.05E-02
130GO:0098656: anion transmembrane transport1.05E-02
131GO:0009638: phototropism1.18E-02
132GO:0043067: regulation of programmed cell death1.18E-02
133GO:0010267: production of ta-siRNAs involved in RNA interference1.18E-02
134GO:0010018: far-red light signaling pathway1.18E-02
135GO:0009086: methionine biosynthetic process1.18E-02
136GO:0000160: phosphorelay signal transduction system1.25E-02
137GO:0006896: Golgi to vacuole transport1.31E-02
138GO:0006535: cysteine biosynthetic process from serine1.31E-02
139GO:0006782: protoporphyrinogen IX biosynthetic process1.31E-02
140GO:0006811: ion transport1.31E-02
141GO:0045036: protein targeting to chloroplast1.31E-02
142GO:0048527: lateral root development1.38E-02
143GO:0007568: aging1.38E-02
144GO:0006413: translational initiation1.44E-02
145GO:0009089: lysine biosynthetic process via diaminopimelate1.46E-02
146GO:0000272: polysaccharide catabolic process1.46E-02
147GO:0018119: peptidyl-cysteine S-nitrosylation1.46E-02
148GO:0009684: indoleacetic acid biosynthetic process1.46E-02
149GO:0009637: response to blue light1.51E-02
150GO:0007623: circadian rhythm1.57E-02
151GO:0016024: CDP-diacylglycerol biosynthetic process1.60E-02
152GO:0045037: protein import into chloroplast stroma1.60E-02
153GO:0008361: regulation of cell size1.60E-02
154GO:0030048: actin filament-based movement1.75E-02
155GO:0010588: cotyledon vascular tissue pattern formation1.75E-02
156GO:0009785: blue light signaling pathway1.75E-02
157GO:0006006: glucose metabolic process1.75E-02
158GO:0030036: actin cytoskeleton organization1.75E-02
159GO:0009718: anthocyanin-containing compound biosynthetic process1.75E-02
160GO:0009767: photosynthetic electron transport chain1.75E-02
161GO:0006631: fatty acid metabolic process1.80E-02
162GO:0048467: gynoecium development1.91E-02
163GO:0006541: glutamine metabolic process1.91E-02
164GO:0010020: chloroplast fission1.91E-02
165GO:0019253: reductive pentose-phosphate cycle1.91E-02
166GO:0010540: basipetal auxin transport1.91E-02
167GO:0009640: photomorphogenesis1.95E-02
168GO:0019853: L-ascorbic acid biosynthetic process2.07E-02
169GO:0000162: tryptophan biosynthetic process2.24E-02
170GO:0006636: unsaturated fatty acid biosynthetic process2.24E-02
171GO:0080147: root hair cell development2.41E-02
172GO:0000027: ribosomal large subunit assembly2.41E-02
173GO:0007010: cytoskeleton organization2.41E-02
174GO:0006289: nucleotide-excision repair2.41E-02
175GO:0019344: cysteine biosynthetic process2.41E-02
176GO:0008299: isoprenoid biosynthetic process2.59E-02
177GO:0007017: microtubule-based process2.59E-02
178GO:0010073: meristem maintenance2.59E-02
179GO:0009585: red, far-red light phototransduction2.63E-02
180GO:0048278: vesicle docking2.77E-02
181GO:0003333: amino acid transmembrane transport2.77E-02
182GO:0048511: rhythmic process2.77E-02
183GO:0006857: oligopeptide transport2.82E-02
184GO:0009409: response to cold2.91E-02
185GO:0010017: red or far-red light signaling pathway2.95E-02
186GO:0071369: cellular response to ethylene stimulus3.14E-02
187GO:0048443: stamen development3.33E-02
188GO:0019722: calcium-mediated signaling3.33E-02
189GO:0051028: mRNA transport3.53E-02
190GO:0042147: retrograde transport, endosome to Golgi3.53E-02
191GO:0005975: carbohydrate metabolic process3.59E-02
192GO:0080022: primary root development3.73E-02
193GO:0010087: phloem or xylem histogenesis3.73E-02
194GO:0006396: RNA processing3.85E-02
195GO:0006520: cellular amino acid metabolic process3.94E-02
196GO:0045489: pectin biosynthetic process3.94E-02
197GO:0010197: polar nucleus fusion3.94E-02
198GO:0010305: leaf vascular tissue pattern formation3.94E-02
199GO:0010182: sugar mediated signaling pathway3.94E-02
200GO:0009741: response to brassinosteroid3.94E-02
201GO:0009742: brassinosteroid mediated signaling pathway3.96E-02
202GO:0061025: membrane fusion4.14E-02
203GO:0009646: response to absence of light4.14E-02
204GO:0015979: photosynthesis4.20E-02
205GO:0006623: protein targeting to vacuole4.36E-02
206GO:0048825: cotyledon development4.36E-02
207GO:0010183: pollen tube guidance4.36E-02
208GO:0009851: auxin biosynthetic process4.36E-02
209GO:0006891: intra-Golgi vesicle-mediated transport4.57E-02
210GO:0006886: intracellular protein transport4.62E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
3GO:0050613: delta14-sterol reductase activity0.00E+00
4GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
5GO:0015229: L-ascorbic acid transporter activity0.00E+00
6GO:0016166: phytoene dehydrogenase activity0.00E+00
7GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
10GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
11GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
12GO:0036033: mediator complex binding0.00E+00
13GO:0004076: biotin synthase activity0.00E+00
14GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
15GO:0052832: inositol monophosphate 3-phosphatase activity8.79E-06
16GO:0008934: inositol monophosphate 1-phosphatase activity8.79E-06
17GO:0052833: inositol monophosphate 4-phosphatase activity8.79E-06
18GO:0008017: microtubule binding2.32E-05
19GO:0016851: magnesium chelatase activity6.54E-05
20GO:0000293: ferric-chelate reductase activity2.51E-04
21GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.37E-04
22GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.45E-04
23GO:0005227: calcium activated cation channel activity4.45E-04
24GO:0004425: indole-3-glycerol-phosphate synthase activity4.45E-04
25GO:0010945: CoA pyrophosphatase activity4.45E-04
26GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.45E-04
27GO:0004853: uroporphyrinogen decarboxylase activity4.45E-04
28GO:0042586: peptide deformylase activity4.45E-04
29GO:0004328: formamidase activity4.45E-04
30GO:0010347: L-galactose-1-phosphate phosphatase activity4.45E-04
31GO:0004817: cysteine-tRNA ligase activity9.61E-04
32GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.61E-04
33GO:0016630: protochlorophyllide reductase activity9.61E-04
34GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity9.61E-04
35GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity9.61E-04
36GO:0004829: threonine-tRNA ligase activity9.61E-04
37GO:0004412: homoserine dehydrogenase activity9.61E-04
38GO:0008728: GTP diphosphokinase activity9.61E-04
39GO:0004512: inositol-3-phosphate synthase activity9.61E-04
40GO:0015172: acidic amino acid transmembrane transporter activity9.61E-04
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.61E-04
42GO:0050017: L-3-cyanoalanine synthase activity9.61E-04
43GO:0048531: beta-1,3-galactosyltransferase activity9.61E-04
44GO:0042389: omega-3 fatty acid desaturase activity9.61E-04
45GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.61E-04
46GO:0004617: phosphoglycerate dehydrogenase activity9.61E-04
47GO:0004766: spermidine synthase activity9.61E-04
48GO:0003777: microtubule motor activity1.06E-03
49GO:0016491: oxidoreductase activity1.37E-03
50GO:0005504: fatty acid binding1.57E-03
51GO:0050734: hydroxycinnamoyltransferase activity1.57E-03
52GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.57E-03
53GO:0003913: DNA photolyase activity1.57E-03
54GO:0004148: dihydrolipoyl dehydrogenase activity1.57E-03
55GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.57E-03
56GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.57E-03
57GO:0070402: NADPH binding1.57E-03
58GO:0008864: formyltetrahydrofolate deformylase activity1.57E-03
59GO:0004049: anthranilate synthase activity1.57E-03
60GO:0080054: low-affinity nitrate transmembrane transporter activity1.57E-03
61GO:0015462: ATPase-coupled protein transmembrane transporter activity1.57E-03
62GO:0008236: serine-type peptidase activity1.71E-03
63GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.83E-03
64GO:0004072: aspartate kinase activity2.27E-03
65GO:0000254: C-4 methylsterol oxidase activity2.27E-03
66GO:0015175: neutral amino acid transmembrane transporter activity2.27E-03
67GO:0003999: adenine phosphoribosyltransferase activity2.27E-03
68GO:0048027: mRNA 5'-UTR binding2.27E-03
69GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity2.27E-03
70GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.27E-03
71GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.27E-03
72GO:0009882: blue light photoreceptor activity2.27E-03
73GO:0035198: miRNA binding2.27E-03
74GO:0070628: proteasome binding3.05E-03
75GO:0045430: chalcone isomerase activity3.05E-03
76GO:0009044: xylan 1,4-beta-xylosidase activity3.05E-03
77GO:0046556: alpha-L-arabinofuranosidase activity3.05E-03
78GO:0016279: protein-lysine N-methyltransferase activity3.05E-03
79GO:0030570: pectate lyase activity3.68E-03
80GO:0005525: GTP binding3.73E-03
81GO:0035091: phosphatidylinositol binding3.77E-03
82GO:0016846: carbon-sulfur lyase activity3.90E-03
83GO:0031593: polyubiquitin binding4.83E-03
84GO:0000210: NAD+ diphosphatase activity4.83E-03
85GO:0016208: AMP binding4.83E-03
86GO:0035673: oligopeptide transmembrane transporter activity4.83E-03
87GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.83E-03
88GO:0102229: amylopectin maltohydrolase activity4.83E-03
89GO:0042578: phosphoric ester hydrolase activity4.83E-03
90GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.83E-03
91GO:0008080: N-acetyltransferase activity5.06E-03
92GO:0042802: identical protein binding5.16E-03
93GO:0016832: aldehyde-lyase activity5.83E-03
94GO:0016161: beta-amylase activity5.83E-03
95GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.83E-03
96GO:0005261: cation channel activity5.83E-03
97GO:0004124: cysteine synthase activity5.83E-03
98GO:0043022: ribosome binding8.02E-03
99GO:0005200: structural constituent of cytoskeleton8.07E-03
100GO:0016597: amino acid binding8.56E-03
101GO:0008173: RNA methyltransferase activity9.21E-03
102GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.21E-03
103GO:0003723: RNA binding1.37E-02
104GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.38E-02
105GO:0047372: acylglycerol lipase activity1.46E-02
106GO:0003993: acid phosphatase activity1.58E-02
107GO:0015198: oligopeptide transporter activity1.60E-02
108GO:0000149: SNARE binding1.65E-02
109GO:0003924: GTPase activity1.74E-02
110GO:0003725: double-stranded RNA binding1.75E-02
111GO:0008081: phosphoric diester hydrolase activity1.75E-02
112GO:0004565: beta-galactosidase activity1.75E-02
113GO:0010329: auxin efflux transmembrane transporter activity1.75E-02
114GO:0005315: inorganic phosphate transmembrane transporter activity1.75E-02
115GO:0000155: phosphorelay sensor kinase activity1.75E-02
116GO:0008266: poly(U) RNA binding1.91E-02
117GO:0003774: motor activity1.91E-02
118GO:0003743: translation initiation factor activity1.92E-02
119GO:0005484: SNAP receptor activity1.95E-02
120GO:0008146: sulfotransferase activity2.07E-02
121GO:0051287: NAD binding2.36E-02
122GO:0043130: ubiquitin binding2.41E-02
123GO:0051087: chaperone binding2.59E-02
124GO:0016788: hydrolase activity, acting on ester bonds2.80E-02
125GO:0050660: flavin adenine dinucleotide binding3.27E-02
126GO:0016887: ATPase activity3.33E-02
127GO:0008514: organic anion transmembrane transporter activity3.33E-02
128GO:0003729: mRNA binding3.46E-02
129GO:0016746: transferase activity, transferring acyl groups3.85E-02
130GO:0052689: carboxylic ester hydrolase activity4.04E-02
131GO:0010181: FMN binding4.14E-02
132GO:0016853: isomerase activity4.14E-02
133GO:0048038: quinone binding4.57E-02
134GO:0004871: signal transducer activity4.71E-02
135GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.79E-02
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Gene type



Gene DE type