co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0000491: small nucleolar ribonucleoprotein complex assembly	0.00E+00
4	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
5	GO:0090627: plant epidermal cell differentiation	0.00E+00
6	GO:0090322: regulation of superoxide metabolic process	0.00E+00
7	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
8	GO:0080127: fruit septum development	0.00E+00
9	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
10	GO:0046486: glycerolipid metabolic process	0.00E+00
11	GO:0019988: charged-tRNA amino acid modification	0.00E+00
12	GO:0090615: mitochondrial mRNA processing	0.00E+00
13	GO:0000492: box C/D snoRNP assembly	0.00E+00
14	GO:0042793: transcription from plastid promoter	6.57E-06
15	GO:0010569: regulation of double-strand break repair via homologous recombination	1.04E-05
16	GO:0046620: regulation of organ growth	2.62E-05
17	GO:0009733: response to auxin	3.25E-05
18	GO:0006518: peptide metabolic process	3.55E-05
19	GO:0006364: rRNA processing	1.88E-04
20	GO:0009734: auxin-activated signaling pathway	2.81E-04
21	GO:0009913: epidermal cell differentiation	2.88E-04
22	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.87E-04
23	GO:0080112: seed growth	4.87E-04
24	GO:1903866: palisade mesophyll development	4.87E-04
25	GO:1905039: carboxylic acid transmembrane transport	4.87E-04
26	GO:1905200: gibberellic acid transmembrane transport	4.87E-04
27	GO:0010063: positive regulation of trichoblast fate specification	4.87E-04
28	GO:0015904: tetracycline transport	4.87E-04
29	GO:0006401: RNA catabolic process	4.95E-04
30	GO:0009658: chloroplast organization	5.23E-04
31	GO:0042127: regulation of cell proliferation	5.49E-04
32	GO:0008033: tRNA processing	6.72E-04
33	GO:0010305: leaf vascular tissue pattern formation	7.40E-04
34	GO:0080156: mitochondrial mRNA modification	9.65E-04
35	GO:1901529: positive regulation of anion channel activity	1.05E-03
36	GO:0019374: galactolipid metabolic process	1.05E-03
37	GO:0048731: system development	1.05E-03
38	GO:0006650: glycerophospholipid metabolic process	1.05E-03
39	GO:2000071: regulation of defense response by callose deposition	1.05E-03
40	GO:0018026: peptidyl-lysine monomethylation	1.05E-03
41	GO:0009662: etioplast organization	1.05E-03
42	GO:1900033: negative regulation of trichome patterning	1.05E-03
43	GO:0080009: mRNA methylation	1.05E-03
44	GO:1900865: chloroplast RNA modification	1.06E-03
45	GO:0006535: cysteine biosynthetic process from serine	1.23E-03
46	GO:0009828: plant-type cell wall loosening	1.23E-03
47	GO:0048829: root cap development	1.23E-03
48	GO:0006949: syncytium formation	1.23E-03
49	GO:0046856: phosphatidylinositol dephosphorylation	1.42E-03
50	GO:0046168: glycerol-3-phosphate catabolic process	1.71E-03
51	GO:0090391: granum assembly	1.71E-03
52	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.71E-03
53	GO:0010588: cotyledon vascular tissue pattern formation	1.85E-03
54	GO:0080188: RNA-directed DNA methylation	2.34E-03
55	GO:0010239: chloroplast mRNA processing	2.48E-03
56	GO:0007276: gamete generation	2.48E-03
57	GO:0006072: glycerol-3-phosphate metabolic process	2.48E-03
58	GO:0010306: rhamnogalacturonan II biosynthetic process	2.48E-03
59	GO:0045017: glycerolipid biosynthetic process	2.48E-03
60	GO:0010371: regulation of gibberellin biosynthetic process	2.48E-03
61	GO:0010071: root meristem specification	2.48E-03
62	GO:0080147: root hair cell development	2.90E-03
63	GO:0019344: cysteine biosynthetic process	2.90E-03
64	GO:0006221: pyrimidine nucleotide biosynthetic process	3.34E-03
65	GO:0006479: protein methylation	3.34E-03
66	GO:0048629: trichome patterning	3.34E-03
67	GO:1900864: mitochondrial RNA modification	3.34E-03
68	GO:0051322: anaphase	3.34E-03
69	GO:0003333: amino acid transmembrane transport	3.52E-03
70	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.86E-03
71	GO:0040008: regulation of growth	4.10E-03
72	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.21E-03
73	GO:0009247: glycolipid biosynthetic process	4.28E-03
74	GO:0016120: carotene biosynthetic process	4.28E-03
75	GO:0080110: sporopollenin biosynthetic process	4.28E-03
76	GO:0016131: brassinosteroid metabolic process	4.28E-03
77	GO:0048497: maintenance of floral organ identity	4.28E-03
78	GO:0016123: xanthophyll biosynthetic process	4.28E-03
79	GO:0009451: RNA modification	4.55E-03
80	GO:0016554: cytidine to uridine editing	5.30E-03
81	GO:0060918: auxin transport	5.30E-03
82	GO:1902456: regulation of stomatal opening	5.30E-03
83	GO:0046855: inositol phosphate dephosphorylation	5.30E-03
84	GO:0003006: developmental process involved in reproduction	5.30E-03
85	GO:0009643: photosynthetic acclimation	5.30E-03
86	GO:0006014: D-ribose metabolic process	5.30E-03
87	GO:0009959: negative gravitropism	5.30E-03
88	GO:0010118: stomatal movement	5.37E-03
89	GO:0009664: plant-type cell wall organization	5.41E-03
90	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.40E-03
91	GO:0009942: longitudinal axis specification	6.40E-03
92	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	6.40E-03
93	GO:0010310: regulation of hydrogen peroxide metabolic process	6.40E-03
94	GO:0048825: cotyledon development	6.68E-03
95	GO:0048437: floral organ development	7.57E-03
96	GO:0015937: coenzyme A biosynthetic process	7.57E-03
97	GO:0010103: stomatal complex morphogenesis	7.57E-03
98	GO:0048528: post-embryonic root development	7.57E-03
99	GO:0010583: response to cyclopentenone	7.65E-03
100	GO:0048367: shoot system development	7.65E-03
101	GO:0045292: mRNA cis splicing, via spliceosome	8.81E-03
102	GO:0009787: regulation of abscisic acid-activated signaling pathway	8.81E-03
103	GO:0009642: response to light intensity	8.81E-03
104	GO:0042255: ribosome assembly	8.81E-03
105	GO:0006402: mRNA catabolic process	8.81E-03
106	GO:0006353: DNA-templated transcription, termination	8.81E-03
107	GO:0019375: galactolipid biosynthetic process	8.81E-03
108	GO:0010492: maintenance of shoot apical meristem identity	8.81E-03
109	GO:0052543: callose deposition in cell wall	8.81E-03
110	GO:0048564: photosystem I assembly	8.81E-03
111	GO:0009657: plastid organization	1.01E-02
112	GO:0019430: removal of superoxide radicals	1.01E-02
113	GO:0032544: plastid translation	1.01E-02
114	GO:0007389: pattern specification process	1.01E-02
115	GO:0010027: thylakoid membrane organization	1.04E-02
116	GO:0048507: meristem development	1.15E-02
117	GO:0000373: Group II intron splicing	1.15E-02
118	GO:0048589: developmental growth	1.15E-02
119	GO:0000902: cell morphogenesis	1.15E-02
120	GO:0016311: dephosphorylation	1.29E-02
121	GO:0031425: chloroplast RNA processing	1.29E-02
122	GO:0048481: plant ovule development	1.36E-02
123	GO:0045036: protein targeting to chloroplast	1.45E-02
124	GO:0016441: posttranscriptional gene silencing	1.45E-02
125	GO:0009682: induced systemic resistance	1.60E-02
126	GO:0015770: sucrose transport	1.60E-02
127	GO:1903507: negative regulation of nucleic acid-templated transcription	1.60E-02
128	GO:0009750: response to fructose	1.60E-02
129	GO:0006865: amino acid transport	1.65E-02
130	GO:0012501: programmed cell death	1.76E-02
131	GO:0045037: protein import into chloroplast stroma	1.76E-02
132	GO:0010582: floral meristem determinacy	1.76E-02
133	GO:0010152: pollen maturation	1.76E-02
134	GO:0010102: lateral root morphogenesis	1.93E-02
135	GO:0030048: actin filament-based movement	1.93E-02
136	GO:0009691: cytokinin biosynthetic process	1.93E-02
137	GO:0009793: embryo development ending in seed dormancy	1.96E-02
138	GO:0030001: metal ion transport	1.97E-02
139	GO:0006468: protein phosphorylation	1.99E-02
140	GO:0032259: methylation	2.00E-02
141	GO:0048467: gynoecium development	2.11E-02
142	GO:0010020: chloroplast fission	2.11E-02
143	GO:0009887: animal organ morphogenesis	2.11E-02
144	GO:0009926: auxin polar transport	2.23E-02
145	GO:0009901: anther dehiscence	2.28E-02
146	GO:0006636: unsaturated fatty acid biosynthetic process	2.47E-02
147	GO:2000377: regulation of reactive oxygen species metabolic process	2.66E-02
148	GO:0031347: regulation of defense response	2.71E-02
149	GO:0010073: meristem maintenance	2.85E-02
150	GO:0006825: copper ion transport	2.85E-02
151	GO:0019953: sexual reproduction	2.85E-02
152	GO:0010431: seed maturation	3.05E-02
153	GO:0009826: unidimensional cell growth	3.08E-02
154	GO:0030245: cellulose catabolic process	3.25E-02
155	GO:0009686: gibberellin biosynthetic process	3.46E-02
156	GO:0010584: pollen exine formation	3.67E-02
157	GO:0048443: stamen development	3.67E-02
158	GO:0006284: base-excision repair	3.67E-02
159	GO:0009740: gibberellic acid mediated signaling pathway	4.03E-02
160	GO:0000226: microtubule cytoskeleton organization	4.11E-02
161	GO:0080022: primary root development	4.11E-02
162	GO:0010087: phloem or xylem histogenesis	4.11E-02
163	GO:0009624: response to nematode	4.28E-02
164	GO:0071472: cellular response to salt stress	4.33E-02
165	GO:0048868: pollen tube development	4.33E-02
166	GO:0009741: response to brassinosteroid	4.33E-02
167	GO:0010268: brassinosteroid homeostasis	4.33E-02
168	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.39E-02
169	GO:0051726: regulation of cell cycle	4.53E-02
170	GO:0007018: microtubule-based movement	4.56E-02
171	GO:0005975: carbohydrate metabolic process	4.59E-02
172	GO:0009749: response to glucose	4.80E-02
173	GO:0019252: starch biosynthetic process	4.80E-02
174	GO:0008654: phospholipid biosynthetic process	4.80E-02
175	GO:0009851: auxin biosynthetic process	4.80E-02
176	GO:0009416: response to light stimulus	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
2	GO:0008859: exoribonuclease II activity	0.00E+00
3	GO:0071633: dihydroceramidase activity	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
6	GO:0003723: RNA binding	7.45E-06
7	GO:0004519: endonuclease activity	1.37E-04
8	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.88E-04
9	GO:0004124: cysteine synthase activity	3.85E-04
10	GO:1905201: gibberellin transmembrane transporter activity	4.87E-04
11	GO:0004632: phosphopantothenate--cysteine ligase activity	4.87E-04
12	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.87E-04
13	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.87E-04
14	GO:0052381: tRNA dimethylallyltransferase activity	4.87E-04
15	GO:0016274: protein-arginine N-methyltransferase activity	4.87E-04
16	GO:0008395: steroid hydroxylase activity	4.87E-04
17	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	4.87E-04
18	GO:0004654: polyribonucleotide nucleotidyltransferase activity	4.87E-04
19	GO:0004016: adenylate cyclase activity	4.87E-04
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.05E-03
21	GO:0008493: tetracycline transporter activity	1.05E-03
22	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.05E-03
23	GO:0042389: omega-3 fatty acid desaturase activity	1.05E-03
24	GO:0004809: tRNA (guanine-N2-)-methyltransferase activity	1.05E-03
25	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.05E-03
26	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.63E-03
27	GO:0016805: dipeptidase activity	1.71E-03
28	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.71E-03
29	GO:0000175: 3'-5'-exoribonuclease activity	1.85E-03
30	GO:0003725: double-stranded RNA binding	1.85E-03
31	GO:0008168: methyltransferase activity	2.01E-03
32	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.09E-03
33	GO:0009041: uridylate kinase activity	2.48E-03
34	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	2.48E-03
35	GO:0001872: (1->3)-beta-D-glucan binding	2.48E-03
36	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.27E-03
37	GO:0010328: auxin influx transmembrane transporter activity	3.34E-03
38	GO:0004930: G-protein coupled receptor activity	3.34E-03
39	GO:0016279: protein-lysine N-methyltransferase activity	3.34E-03
40	GO:0010011: auxin binding	3.34E-03
41	GO:0030570: pectate lyase activity	4.21E-03
42	GO:0004888: transmembrane signaling receptor activity	4.28E-03
43	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.28E-03
44	GO:0008725: DNA-3-methyladenine glycosylase activity	4.28E-03
45	GO:0004784: superoxide dismutase activity	5.30E-03
46	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	5.30E-03
47	GO:0001085: RNA polymerase II transcription factor binding	5.79E-03
48	GO:0004747: ribokinase activity	6.40E-03
49	GO:0030515: snoRNA binding	7.57E-03
50	GO:0008865: fructokinase activity	8.81E-03
51	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.01E-02
52	GO:0008173: RNA methyltransferase activity	1.01E-02
53	GO:0019843: rRNA binding	1.24E-02
54	GO:0004222: metalloendopeptidase activity	1.50E-02
55	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.58E-02
56	GO:0008515: sucrose transmembrane transporter activity	1.60E-02
57	GO:0003774: motor activity	2.11E-02
58	GO:0051119: sugar transmembrane transporter activity	2.28E-02
59	GO:0004190: aspartic-type endopeptidase activity	2.28E-02
60	GO:0043621: protein self-association	2.42E-02
61	GO:0015293: symporter activity	2.51E-02
62	GO:0003714: transcription corepressor activity	2.66E-02
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.70E-02
64	GO:0004540: ribonuclease activity	3.05E-02
65	GO:0016788: hydrolase activity, acting on ester bonds	3.31E-02
66	GO:0003777: microtubule motor activity	3.33E-02
67	GO:0015171: amino acid transmembrane transporter activity	3.33E-02
68	GO:0008810: cellulase activity	3.46E-02
69	GO:0003727: single-stranded RNA binding	3.67E-02
70	GO:0003677: DNA binding	3.76E-02
71	GO:0005102: receptor binding	3.89E-02
72	GO:0003779: actin binding	4.15E-02
73	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.33E-02
74	GO:0050662: coenzyme binding	4.56E-02
75	GO:0052689: carboxylic ester hydrolase activity	4.76E-02
76	GO:0019901: protein kinase binding	4.80E-02
77	GO:0004674: protein serine/threonine kinase activity	4.96E-02