GO Enrichment Analysis of Co-expressed Genes with
AT3G05410
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 2 | GO:0000455: enzyme-directed rRNA pseudouridine synthesis | 0.00E+00 |
| 3 | GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) | 0.00E+00 |
| 4 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 5 | GO:0045184: establishment of protein localization | 0.00E+00 |
| 6 | GO:1903224: regulation of endodermal cell differentiation | 0.00E+00 |
| 7 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 8 | GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 9 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 10 | GO:0015843: methylammonium transport | 0.00E+00 |
| 11 | GO:0031222: arabinan catabolic process | 0.00E+00 |
| 12 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 13 | GO:0046620: regulation of organ growth | 1.82E-09 |
| 14 | GO:0009734: auxin-activated signaling pathway | 2.99E-06 |
| 15 | GO:0042793: transcription from plastid promoter | 3.93E-06 |
| 16 | GO:0009926: auxin polar transport | 5.29E-05 |
| 17 | GO:0009828: plant-type cell wall loosening | 9.05E-05 |
| 18 | GO:0046656: folic acid biosynthetic process | 9.53E-05 |
| 19 | GO:0009733: response to auxin | 1.74E-04 |
| 20 | GO:0009658: chloroplast organization | 2.80E-04 |
| 21 | GO:0046654: tetrahydrofolate biosynthetic process | 2.85E-04 |
| 22 | GO:2000067: regulation of root morphogenesis | 2.85E-04 |
| 23 | GO:0090558: plant epidermis development | 3.99E-04 |
| 24 | GO:0043266: regulation of potassium ion transport | 3.99E-04 |
| 25 | GO:0010480: microsporocyte differentiation | 3.99E-04 |
| 26 | GO:0042371: vitamin K biosynthetic process | 3.99E-04 |
| 27 | GO:2000021: regulation of ion homeostasis | 3.99E-04 |
| 28 | GO:0035987: endodermal cell differentiation | 3.99E-04 |
| 29 | GO:0043609: regulation of carbon utilization | 3.99E-04 |
| 30 | GO:0000066: mitochondrial ornithine transport | 3.99E-04 |
| 31 | GO:0050801: ion homeostasis | 3.99E-04 |
| 32 | GO:0006419: alanyl-tRNA aminoacylation | 3.99E-04 |
| 33 | GO:0042659: regulation of cell fate specification | 3.99E-04 |
| 34 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 3.99E-04 |
| 35 | GO:0000105: histidine biosynthetic process | 4.62E-04 |
| 36 | GO:0040008: regulation of growth | 5.42E-04 |
| 37 | GO:0006002: fructose 6-phosphate metabolic process | 5.64E-04 |
| 38 | GO:0000373: Group II intron splicing | 6.76E-04 |
| 39 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 8.66E-04 |
| 40 | GO:0018026: peptidyl-lysine monomethylation | 8.66E-04 |
| 41 | GO:0071497: cellular response to freezing | 8.66E-04 |
| 42 | GO:0099402: plant organ development | 8.66E-04 |
| 43 | GO:0042325: regulation of phosphorylation | 8.66E-04 |
| 44 | GO:1904143: positive regulation of carotenoid biosynthetic process | 8.66E-04 |
| 45 | GO:0006597: spermine biosynthetic process | 8.66E-04 |
| 46 | GO:0042550: photosystem I stabilization | 8.66E-04 |
| 47 | GO:0045036: protein targeting to chloroplast | 9.28E-04 |
| 48 | GO:0006949: syncytium formation | 9.28E-04 |
| 49 | GO:2000012: regulation of auxin polar transport | 1.38E-03 |
| 50 | GO:0001578: microtubule bundle formation | 1.40E-03 |
| 51 | GO:0006760: folic acid-containing compound metabolic process | 1.40E-03 |
| 52 | GO:0006557: S-adenosylmethioninamine biosynthetic process | 1.40E-03 |
| 53 | GO:0010447: response to acidic pH | 1.40E-03 |
| 54 | GO:0030418: nicotianamine biosynthetic process | 1.40E-03 |
| 55 | GO:0090708: specification of plant organ axis polarity | 1.40E-03 |
| 56 | GO:0019419: sulfate reduction | 1.40E-03 |
| 57 | GO:0006000: fructose metabolic process | 1.40E-03 |
| 58 | GO:0010306: rhamnogalacturonan II biosynthetic process | 2.03E-03 |
| 59 | GO:0015696: ammonium transport | 2.03E-03 |
| 60 | GO:0046739: transport of virus in multicellular host | 2.03E-03 |
| 61 | GO:2000904: regulation of starch metabolic process | 2.03E-03 |
| 62 | GO:0016556: mRNA modification | 2.03E-03 |
| 63 | GO:0051289: protein homotetramerization | 2.03E-03 |
| 64 | GO:0043572: plastid fission | 2.03E-03 |
| 65 | GO:2001141: regulation of RNA biosynthetic process | 2.03E-03 |
| 66 | GO:0051639: actin filament network formation | 2.03E-03 |
| 67 | GO:0044211: CTP salvage | 2.03E-03 |
| 68 | GO:0019344: cysteine biosynthetic process | 2.16E-03 |
| 69 | GO:0007275: multicellular organism development | 2.52E-03 |
| 70 | GO:0030104: water homeostasis | 2.73E-03 |
| 71 | GO:0008295: spermidine biosynthetic process | 2.73E-03 |
| 72 | GO:0006021: inositol biosynthetic process | 2.73E-03 |
| 73 | GO:0044206: UMP salvage | 2.73E-03 |
| 74 | GO:0006346: methylation-dependent chromatin silencing | 2.73E-03 |
| 75 | GO:1901141: regulation of lignin biosynthetic process | 2.73E-03 |
| 76 | GO:0051764: actin crosslink formation | 2.73E-03 |
| 77 | GO:0051322: anaphase | 2.73E-03 |
| 78 | GO:0072488: ammonium transmembrane transport | 2.73E-03 |
| 79 | GO:0010114: response to red light | 2.77E-03 |
| 80 | GO:0009451: RNA modification | 2.89E-03 |
| 81 | GO:0009904: chloroplast accumulation movement | 3.49E-03 |
| 82 | GO:0010236: plastoquinone biosynthetic process | 3.49E-03 |
| 83 | GO:0009107: lipoate biosynthetic process | 3.49E-03 |
| 84 | GO:0009664: plant-type cell wall organization | 3.70E-03 |
| 85 | GO:0009741: response to brassinosteroid | 4.30E-03 |
| 86 | GO:1902456: regulation of stomatal opening | 4.32E-03 |
| 87 | GO:0006206: pyrimidine nucleobase metabolic process | 4.32E-03 |
| 88 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 4.32E-03 |
| 89 | GO:0010405: arabinogalactan protein metabolic process | 4.32E-03 |
| 90 | GO:0006655: phosphatidylglycerol biosynthetic process | 4.32E-03 |
| 91 | GO:0009826: unidimensional cell growth | 5.13E-03 |
| 92 | GO:0042372: phylloquinone biosynthetic process | 5.20E-03 |
| 93 | GO:1901259: chloroplast rRNA processing | 5.20E-03 |
| 94 | GO:0009942: longitudinal axis specification | 5.20E-03 |
| 95 | GO:0009903: chloroplast avoidance movement | 5.20E-03 |
| 96 | GO:0030488: tRNA methylation | 5.20E-03 |
| 97 | GO:0010583: response to cyclopentenone | 5.67E-03 |
| 98 | GO:0009860: pollen tube growth | 6.08E-03 |
| 99 | GO:0009396: folic acid-containing compound biosynthetic process | 6.15E-03 |
| 100 | GO:0006400: tRNA modification | 6.15E-03 |
| 101 | GO:0030307: positive regulation of cell growth | 6.15E-03 |
| 102 | GO:0007050: cell cycle arrest | 6.15E-03 |
| 103 | GO:0009772: photosynthetic electron transport in photosystem II | 6.15E-03 |
| 104 | GO:0048437: floral organ development | 6.15E-03 |
| 105 | GO:0010252: auxin homeostasis | 6.44E-03 |
| 106 | GO:0009742: brassinosteroid mediated signaling pathway | 6.85E-03 |
| 107 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 7.15E-03 |
| 108 | GO:0006353: DNA-templated transcription, termination | 7.15E-03 |
| 109 | GO:0019375: galactolipid biosynthetic process | 7.15E-03 |
| 110 | GO:0055075: potassium ion homeostasis | 7.15E-03 |
| 111 | GO:0010027: thylakoid membrane organization | 7.69E-03 |
| 112 | GO:0010233: phloem transport | 8.21E-03 |
| 113 | GO:0010497: plasmodesmata-mediated intercellular transport | 8.21E-03 |
| 114 | GO:0006526: arginine biosynthetic process | 8.21E-03 |
| 115 | GO:0032544: plastid translation | 8.21E-03 |
| 116 | GO:0007389: pattern specification process | 8.21E-03 |
| 117 | GO:0071482: cellular response to light stimulus | 8.21E-03 |
| 118 | GO:0010411: xyloglucan metabolic process | 9.07E-03 |
| 119 | GO:0009416: response to light stimulus | 1.01E-02 |
| 120 | GO:2000280: regulation of root development | 1.05E-02 |
| 121 | GO:0009638: phototropism | 1.05E-02 |
| 122 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.05E-02 |
| 123 | GO:0000160: phosphorelay signal transduction system | 1.06E-02 |
| 124 | GO:0006499: N-terminal protein myristoylation | 1.11E-02 |
| 125 | GO:0006535: cysteine biosynthetic process from serine | 1.17E-02 |
| 126 | GO:0000103: sulfate assimilation | 1.17E-02 |
| 127 | GO:0006259: DNA metabolic process | 1.17E-02 |
| 128 | GO:0009637: response to blue light | 1.28E-02 |
| 129 | GO:0006265: DNA topological change | 1.29E-02 |
| 130 | GO:0006352: DNA-templated transcription, initiation | 1.29E-02 |
| 131 | GO:0048229: gametophyte development | 1.29E-02 |
| 132 | GO:0010015: root morphogenesis | 1.29E-02 |
| 133 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.43E-02 |
| 134 | GO:0045037: protein import into chloroplast stroma | 1.43E-02 |
| 135 | GO:0006790: sulfur compound metabolic process | 1.43E-02 |
| 136 | GO:0009739: response to gibberellin | 1.47E-02 |
| 137 | GO:0009785: blue light signaling pathway | 1.56E-02 |
| 138 | GO:0009691: cytokinin biosynthetic process | 1.56E-02 |
| 139 | GO:0010075: regulation of meristem growth | 1.56E-02 |
| 140 | GO:0010020: chloroplast fission | 1.70E-02 |
| 141 | GO:0009934: regulation of meristem structural organization | 1.70E-02 |
| 142 | GO:0042546: cell wall biogenesis | 1.72E-02 |
| 143 | GO:0010039: response to iron ion | 1.84E-02 |
| 144 | GO:0090351: seedling development | 1.84E-02 |
| 145 | GO:0046854: phosphatidylinositol phosphorylation | 1.84E-02 |
| 146 | GO:0006833: water transport | 1.99E-02 |
| 147 | GO:0051017: actin filament bundle assembly | 2.14E-02 |
| 148 | GO:0009736: cytokinin-activated signaling pathway | 2.23E-02 |
| 149 | GO:0010073: meristem maintenance | 2.30E-02 |
| 150 | GO:0051302: regulation of cell division | 2.30E-02 |
| 151 | GO:0019953: sexual reproduction | 2.30E-02 |
| 152 | GO:0031408: oxylipin biosynthetic process | 2.46E-02 |
| 153 | GO:0016998: cell wall macromolecule catabolic process | 2.46E-02 |
| 154 | GO:0006306: DNA methylation | 2.46E-02 |
| 155 | GO:0006730: one-carbon metabolic process | 2.63E-02 |
| 156 | GO:0031348: negative regulation of defense response | 2.63E-02 |
| 157 | GO:0010082: regulation of root meristem growth | 2.79E-02 |
| 158 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.79E-02 |
| 159 | GO:0010091: trichome branching | 2.96E-02 |
| 160 | GO:0008033: tRNA processing | 3.32E-02 |
| 161 | GO:0010118: stomatal movement | 3.32E-02 |
| 162 | GO:0048653: anther development | 3.32E-02 |
| 163 | GO:0000226: microtubule cytoskeleton organization | 3.32E-02 |
| 164 | GO:0048868: pollen tube development | 3.50E-02 |
| 165 | GO:0048544: recognition of pollen | 3.69E-02 |
| 166 | GO:0007059: chromosome segregation | 3.69E-02 |
| 167 | GO:0009646: response to absence of light | 3.69E-02 |
| 168 | GO:0008654: phospholipid biosynthetic process | 3.87E-02 |
| 169 | GO:0055072: iron ion homeostasis | 3.87E-02 |
| 170 | GO:0009851: auxin biosynthetic process | 3.87E-02 |
| 171 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 4.07E-02 |
| 172 | GO:0009058: biosynthetic process | 4.18E-02 |
| 173 | GO:0031047: gene silencing by RNA | 4.26E-02 |
| 174 | GO:0019761: glucosinolate biosynthetic process | 4.26E-02 |
| 175 | GO:0032502: developmental process | 4.26E-02 |
| 176 | GO:0006508: proteolysis | 4.29E-02 |
| 177 | GO:1901657: glycosyl compound metabolic process | 4.46E-02 |
| 178 | GO:0009790: embryo development | 4.62E-02 |
| 179 | GO:0006464: cellular protein modification process | 4.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071633: dihydroceramidase activity | 0.00E+00 |
| 2 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 5 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
| 6 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 7 | GO:0004358: glutamate N-acetyltransferase activity | 0.00E+00 |
| 8 | GO:0070009: serine-type aminopeptidase activity | 0.00E+00 |
| 9 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
| 10 | GO:0004156: dihydropteroate synthase activity | 3.99E-04 |
| 11 | GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity | 3.99E-04 |
| 12 | GO:0004813: alanine-tRNA ligase activity | 3.99E-04 |
| 13 | GO:0005290: L-histidine transmembrane transporter activity | 3.99E-04 |
| 14 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 3.99E-04 |
| 15 | GO:0052381: tRNA dimethylallyltransferase activity | 3.99E-04 |
| 16 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 3.99E-04 |
| 17 | GO:0046481: digalactosyldiacylglycerol synthase activity | 3.99E-04 |
| 18 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 3.99E-04 |
| 19 | GO:0004400: histidinol-phosphate transaminase activity | 3.99E-04 |
| 20 | GO:0050139: nicotinate-N-glucosyltransferase activity | 3.99E-04 |
| 21 | GO:0046480: galactolipid galactosyltransferase activity | 3.99E-04 |
| 22 | GO:0005227: calcium activated cation channel activity | 3.99E-04 |
| 23 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 3.99E-04 |
| 24 | GO:0008934: inositol monophosphate 1-phosphatase activity | 8.66E-04 |
| 25 | GO:0052833: inositol monophosphate 4-phosphatase activity | 8.66E-04 |
| 26 | GO:0000064: L-ornithine transmembrane transporter activity | 8.66E-04 |
| 27 | GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity | 8.66E-04 |
| 28 | GO:0004150: dihydroneopterin aldolase activity | 8.66E-04 |
| 29 | GO:0017118: lipoyltransferase activity | 8.66E-04 |
| 30 | GO:0033741: adenylyl-sulfate reductase (glutathione) activity | 8.66E-04 |
| 31 | GO:0016415: octanoyltransferase activity | 8.66E-04 |
| 32 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 8.66E-04 |
| 33 | GO:0052832: inositol monophosphate 3-phosphatase activity | 8.66E-04 |
| 34 | GO:0009973: adenylyl-sulfate reductase activity | 8.66E-04 |
| 35 | GO:0008805: carbon-monoxide oxygenase activity | 8.66E-04 |
| 36 | GO:0008237: metallopeptidase activity | 9.17E-04 |
| 37 | GO:0030410: nicotianamine synthase activity | 1.40E-03 |
| 38 | GO:0004557: alpha-galactosidase activity | 1.40E-03 |
| 39 | GO:0016805: dipeptidase activity | 1.40E-03 |
| 40 | GO:0052692: raffinose alpha-galactosidase activity | 1.40E-03 |
| 41 | GO:0004014: adenosylmethionine decarboxylase activity | 1.40E-03 |
| 42 | GO:0046524: sucrose-phosphate synthase activity | 1.40E-03 |
| 43 | GO:0017150: tRNA dihydrouridine synthase activity | 1.40E-03 |
| 44 | GO:0035250: UDP-galactosyltransferase activity | 2.03E-03 |
| 45 | GO:0015181: arginine transmembrane transporter activity | 2.03E-03 |
| 46 | GO:0001872: (1->3)-beta-D-glucan binding | 2.03E-03 |
| 47 | GO:0015189: L-lysine transmembrane transporter activity | 2.03E-03 |
| 48 | GO:0004176: ATP-dependent peptidase activity | 2.62E-03 |
| 49 | GO:0046556: alpha-L-arabinofuranosidase activity | 2.73E-03 |
| 50 | GO:0004659: prenyltransferase activity | 2.73E-03 |
| 51 | GO:0016279: protein-lysine N-methyltransferase activity | 2.73E-03 |
| 52 | GO:0001053: plastid sigma factor activity | 2.73E-03 |
| 53 | GO:0004845: uracil phosphoribosyltransferase activity | 2.73E-03 |
| 54 | GO:0016987: sigma factor activity | 2.73E-03 |
| 55 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 3.49E-03 |
| 56 | GO:0005275: amine transmembrane transporter activity | 3.49E-03 |
| 57 | GO:0004523: RNA-DNA hybrid ribonuclease activity | 3.49E-03 |
| 58 | GO:0004519: endonuclease activity | 4.28E-03 |
| 59 | GO:0008519: ammonium transmembrane transporter activity | 4.32E-03 |
| 60 | GO:2001070: starch binding | 4.32E-03 |
| 61 | GO:0004605: phosphatidate cytidylyltransferase activity | 4.32E-03 |
| 62 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 4.32E-03 |
| 63 | GO:0004849: uridine kinase activity | 5.20E-03 |
| 64 | GO:0004656: procollagen-proline 4-dioxygenase activity | 5.20E-03 |
| 65 | GO:0004124: cysteine synthase activity | 5.20E-03 |
| 66 | GO:0008195: phosphatidate phosphatase activity | 5.20E-03 |
| 67 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 5.20E-03 |
| 68 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 5.31E-03 |
| 69 | GO:0000156: phosphorelay response regulator activity | 6.05E-03 |
| 70 | GO:0003872: 6-phosphofructokinase activity | 6.15E-03 |
| 71 | GO:0008173: RNA methyltransferase activity | 8.21E-03 |
| 72 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 8.21E-03 |
| 73 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 9.07E-03 |
| 74 | GO:0009672: auxin:proton symporter activity | 1.05E-02 |
| 75 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.28E-02 |
| 76 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.29E-02 |
| 77 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 1.43E-02 |
| 78 | GO:0000049: tRNA binding | 1.43E-02 |
| 79 | GO:0010329: auxin efflux transmembrane transporter activity | 1.56E-02 |
| 80 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.56E-02 |
| 81 | GO:0004089: carbonate dehydratase activity | 1.56E-02 |
| 82 | GO:0019888: protein phosphatase regulator activity | 1.56E-02 |
| 83 | GO:0009982: pseudouridine synthase activity | 1.56E-02 |
| 84 | GO:0003723: RNA binding | 1.78E-02 |
| 85 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.99E-02 |
| 86 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.99E-02 |
| 87 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.99E-02 |
| 88 | GO:0031418: L-ascorbic acid binding | 2.14E-02 |
| 89 | GO:0005345: purine nucleobase transmembrane transporter activity | 2.30E-02 |
| 90 | GO:0016757: transferase activity, transferring glycosyl groups | 2.36E-02 |
| 91 | GO:0004707: MAP kinase activity | 2.46E-02 |
| 92 | GO:0033612: receptor serine/threonine kinase binding | 2.46E-02 |
| 93 | GO:0003964: RNA-directed DNA polymerase activity | 2.46E-02 |
| 94 | GO:0008408: 3'-5' exonuclease activity | 2.46E-02 |
| 95 | GO:0004527: exonuclease activity | 3.50E-02 |
| 96 | GO:0008536: Ran GTPase binding | 3.50E-02 |
| 97 | GO:0010181: FMN binding | 3.69E-02 |
| 98 | GO:0004871: signal transducer activity | 3.85E-02 |
| 99 | GO:0004518: nuclease activity | 4.26E-02 |
| 100 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.46E-02 |
| 101 | GO:0051015: actin filament binding | 4.46E-02 |
| 102 | GO:0046872: metal ion binding | 4.61E-02 |