Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G04760

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070979: protein K11-linked ubiquitination0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0043488: regulation of mRNA stability0.00E+00
4GO:0030155: regulation of cell adhesion0.00E+00
5GO:0046460: neutral lipid biosynthetic process0.00E+00
6GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
7GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
8GO:0090071: negative regulation of ribosome biogenesis0.00E+00
9GO:0031116: positive regulation of microtubule polymerization0.00E+00
10GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
11GO:0010068: protoderm histogenesis0.00E+00
12GO:0007037: vacuolar phosphate transport0.00E+00
13GO:0007638: mechanosensory behavior0.00E+00
14GO:0031129: inductive cell-cell signaling0.00E+00
15GO:0006399: tRNA metabolic process0.00E+00
16GO:0015843: methylammonium transport0.00E+00
17GO:0040008: regulation of growth5.72E-07
18GO:0009734: auxin-activated signaling pathway5.95E-07
19GO:0009733: response to auxin7.60E-07
20GO:0009658: chloroplast organization3.34E-05
21GO:0046620: regulation of organ growth3.77E-05
22GO:0009657: plastid organization5.29E-05
23GO:0022622: root system development1.70E-04
24GO:2000012: regulation of auxin polar transport2.18E-04
25GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.54E-04
26GO:0006177: GMP biosynthetic process5.66E-04
27GO:0006747: FAD biosynthetic process5.66E-04
28GO:0006419: alanyl-tRNA aminoacylation5.66E-04
29GO:0000476: maturation of 4.5S rRNA5.66E-04
30GO:0000967: rRNA 5'-end processing5.66E-04
31GO:0051418: microtubule nucleation by microtubule organizing center5.66E-04
32GO:0010482: regulation of epidermal cell division5.66E-04
33GO:1902265: abscisic acid homeostasis5.66E-04
34GO:0043266: regulation of potassium ion transport5.66E-04
35GO:0010480: microsporocyte differentiation5.66E-04
36GO:0042547: cell wall modification involved in multidimensional cell growth5.66E-04
37GO:2000021: regulation of ion homeostasis5.66E-04
38GO:0045488: pectin metabolic process5.66E-04
39GO:0034080: CENP-A containing nucleosome assembly5.66E-04
40GO:1902458: positive regulation of stomatal opening5.66E-04
41GO:0006400: tRNA modification6.19E-04
42GO:0032880: regulation of protein localization6.19E-04
43GO:0009926: auxin polar transport9.99E-04
44GO:0000373: Group II intron splicing1.12E-03
45GO:0034470: ncRNA processing1.22E-03
46GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole1.22E-03
47GO:0033566: gamma-tubulin complex localization1.22E-03
48GO:1900871: chloroplast mRNA modification1.22E-03
49GO:0007154: cell communication1.22E-03
50GO:2000039: regulation of trichome morphogenesis1.22E-03
51GO:1900033: negative regulation of trichome patterning1.22E-03
52GO:0034755: iron ion transmembrane transport1.22E-03
53GO:0042814: monopolar cell growth1.22E-03
54GO:0009220: pyrimidine ribonucleotide biosynthetic process1.22E-03
55GO:1903426: regulation of reactive oxygen species biosynthetic process1.22E-03
56GO:0009638: phototropism1.32E-03
57GO:1900865: chloroplast RNA modification1.32E-03
58GO:0007275: multicellular organism development1.61E-03
59GO:0006415: translational termination1.78E-03
60GO:0007166: cell surface receptor signaling pathway1.89E-03
61GO:0048281: inflorescence morphogenesis2.00E-03
62GO:0031022: nuclear migration along microfilament2.00E-03
63GO:0051127: positive regulation of actin nucleation2.00E-03
64GO:0006954: inflammatory response2.00E-03
65GO:0031145: anaphase-promoting complex-dependent catabolic process2.00E-03
66GO:0009150: purine ribonucleotide metabolic process2.00E-03
67GO:0045604: regulation of epidermal cell differentiation2.00E-03
68GO:0001578: microtubule bundle formation2.00E-03
69GO:0045493: xylan catabolic process2.00E-03
70GO:0006760: folic acid-containing compound metabolic process2.00E-03
71GO:0007052: mitotic spindle organization2.00E-03
72GO:0006468: protein phosphorylation2.46E-03
73GO:0051513: regulation of monopolar cell growth2.90E-03
74GO:0007231: osmosensory signaling pathway2.90E-03
75GO:0030071: regulation of mitotic metaphase/anaphase transition2.90E-03
76GO:0051639: actin filament network formation2.90E-03
77GO:0009226: nucleotide-sugar biosynthetic process2.90E-03
78GO:0048645: animal organ formation2.90E-03
79GO:0044211: CTP salvage2.90E-03
80GO:0015696: ammonium transport2.90E-03
81GO:0048530: fruit morphogenesis2.90E-03
82GO:0090307: mitotic spindle assembly2.90E-03
83GO:0046739: transport of virus in multicellular host2.90E-03
84GO:2000904: regulation of starch metabolic process2.90E-03
85GO:0006168: adenine salvage2.90E-03
86GO:0006164: purine nucleotide biosynthetic process2.90E-03
87GO:0010148: transpiration2.90E-03
88GO:2001141: regulation of RNA biosynthetic process2.90E-03
89GO:0016556: mRNA modification2.90E-03
90GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.90E-03
91GO:0034508: centromere complex assembly2.90E-03
92GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.90E-03
93GO:0006166: purine ribonucleoside salvage2.90E-03
94GO:0005992: trehalose biosynthetic process3.65E-03
95GO:0051764: actin crosslink formation3.91E-03
96GO:0015846: polyamine transport3.91E-03
97GO:0051322: anaphase3.91E-03
98GO:0033500: carbohydrate homeostasis3.91E-03
99GO:0072488: ammonium transmembrane transport3.91E-03
100GO:0046656: folic acid biosynthetic process3.91E-03
101GO:0044205: 'de novo' UMP biosynthetic process3.91E-03
102GO:0007020: microtubule nucleation3.91E-03
103GO:0009902: chloroplast relocation3.91E-03
104GO:0044206: UMP salvage3.91E-03
105GO:0009165: nucleotide biosynthetic process3.91E-03
106GO:0048629: trichome patterning3.91E-03
107GO:0044209: AMP salvage5.02E-03
108GO:0010158: abaxial cell fate specification5.02E-03
109GO:0016131: brassinosteroid metabolic process5.02E-03
110GO:0032876: negative regulation of DNA endoreduplication5.02E-03
111GO:0046785: microtubule polymerization5.02E-03
112GO:0045038: protein import into chloroplast thylakoid membrane5.02E-03
113GO:0010091: trichome branching5.77E-03
114GO:0006655: phosphatidylglycerol biosynthetic process6.22E-03
115GO:0006139: nucleobase-containing compound metabolic process6.22E-03
116GO:0016554: cytidine to uridine editing6.22E-03
117GO:0006206: pyrimidine nucleobase metabolic process6.22E-03
118GO:0032973: amino acid export6.22E-03
119GO:0018258: protein O-linked glycosylation via hydroxyproline6.22E-03
120GO:0009228: thiamine biosynthetic process6.22E-03
121GO:0010405: arabinogalactan protein metabolic process6.22E-03
122GO:0008284: positive regulation of cell proliferation6.25E-03
123GO:0009789: positive regulation of abscisic acid-activated signaling pathway6.25E-03
124GO:0045490: pectin catabolic process6.25E-03
125GO:0000226: microtubule cytoskeleton organization6.76E-03
126GO:0009958: positive gravitropism7.30E-03
127GO:0009648: photoperiodism7.52E-03
128GO:0042372: phylloquinone biosynthetic process7.52E-03
129GO:0009082: branched-chain amino acid biosynthetic process7.52E-03
130GO:0017148: negative regulation of translation7.52E-03
131GO:0009942: longitudinal axis specification7.52E-03
132GO:0034389: lipid particle organization7.52E-03
133GO:0046654: tetrahydrofolate biosynthetic process7.52E-03
134GO:0009099: valine biosynthetic process7.52E-03
135GO:0009903: chloroplast avoidance movement7.52E-03
136GO:0030488: tRNA methylation7.52E-03
137GO:2000033: regulation of seed dormancy process7.52E-03
138GO:0048444: floral organ morphogenesis7.52E-03
139GO:0080086: stamen filament development7.52E-03
140GO:0016042: lipid catabolic process8.88E-03
141GO:0048528: post-embryonic root development8.91E-03
142GO:0043090: amino acid import8.91E-03
143GO:0070370: cellular heat acclimation8.91E-03
144GO:0010050: vegetative phase change8.91E-03
145GO:0048437: floral organ development8.91E-03
146GO:0010196: nonphotochemical quenching8.91E-03
147GO:0010444: guard mother cell differentiation8.91E-03
148GO:0030307: positive regulation of cell growth8.91E-03
149GO:0050829: defense response to Gram-negative bacterium8.91E-03
150GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process8.91E-03
151GO:0010103: stomatal complex morphogenesis8.91E-03
152GO:0010583: response to cyclopentenone9.66E-03
153GO:0032502: developmental process9.66E-03
154GO:0052543: callose deposition in cell wall1.04E-02
155GO:0006402: mRNA catabolic process1.04E-02
156GO:0009850: auxin metabolic process1.04E-02
157GO:0009787: regulation of abscisic acid-activated signaling pathway1.04E-02
158GO:0009704: de-etiolation1.04E-02
159GO:0032875: regulation of DNA endoreduplication1.04E-02
160GO:0042255: ribosome assembly1.04E-02
161GO:2000070: regulation of response to water deprivation1.04E-02
162GO:0006353: DNA-templated transcription, termination1.04E-02
163GO:0070413: trehalose metabolism in response to stress1.04E-02
164GO:0009231: riboflavin biosynthetic process1.04E-02
165GO:0009828: plant-type cell wall loosening1.10E-02
166GO:0009932: cell tip growth1.19E-02
167GO:0001558: regulation of cell growth1.19E-02
168GO:0006002: fructose 6-phosphate metabolic process1.19E-02
169GO:0071482: cellular response to light stimulus1.19E-02
170GO:0009827: plant-type cell wall modification1.19E-02
171GO:0009097: isoleucine biosynthetic process1.19E-02
172GO:0010497: plasmodesmata-mediated intercellular transport1.19E-02
173GO:0007389: pattern specification process1.19E-02
174GO:0071555: cell wall organization1.29E-02
175GO:0006508: proteolysis1.32E-02
176GO:0009742: brassinosteroid mediated signaling pathway1.35E-02
177GO:0009051: pentose-phosphate shunt, oxidative branch1.36E-02
178GO:0080144: amino acid homeostasis1.36E-02
179GO:0019432: triglyceride biosynthetic process1.36E-02
180GO:0006189: 'de novo' IMP biosynthetic process1.36E-02
181GO:0000902: cell morphogenesis1.36E-02
182GO:0009627: systemic acquired resistance1.47E-02
183GO:0042761: very long-chain fatty acid biosynthetic process1.53E-02
184GO:0009098: leucine biosynthetic process1.53E-02
185GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.53E-02
186GO:0016310: phosphorylation1.68E-02
187GO:0006949: syncytium formation1.71E-02
188GO:0006259: DNA metabolic process1.71E-02
189GO:0009299: mRNA transcription1.71E-02
190GO:0010162: seed dormancy process1.71E-02
191GO:0006535: cysteine biosynthetic process from serine1.71E-02
192GO:0009641: shade avoidance1.71E-02
193GO:0010015: root morphogenesis1.89E-02
194GO:0006265: DNA topological change1.89E-02
195GO:0009089: lysine biosynthetic process via diaminopimelate1.89E-02
196GO:0006816: calcium ion transport1.89E-02
197GO:0009773: photosynthetic electron transport in photosystem I1.89E-02
198GO:1903507: negative regulation of nucleic acid-templated transcription1.89E-02
199GO:0006879: cellular iron ion homeostasis1.89E-02
200GO:0006352: DNA-templated transcription, initiation1.89E-02
201GO:0048229: gametophyte development1.89E-02
202GO:0048527: lateral root development1.99E-02
203GO:0006790: sulfur compound metabolic process2.08E-02
204GO:0016024: CDP-diacylglycerol biosynthetic process2.08E-02
205GO:0045037: protein import into chloroplast stroma2.08E-02
206GO:0010582: floral meristem determinacy2.08E-02
207GO:0009637: response to blue light2.18E-02
208GO:0009767: photosynthetic electron transport chain2.28E-02
209GO:0030048: actin filament-based movement2.28E-02
210GO:0010628: positive regulation of gene expression2.28E-02
211GO:0009785: blue light signaling pathway2.28E-02
212GO:0006006: glucose metabolic process2.28E-02
213GO:0030036: actin cytoskeleton organization2.28E-02
214GO:0050826: response to freezing2.28E-02
215GO:0010075: regulation of meristem growth2.28E-02
216GO:0009725: response to hormone2.28E-02
217GO:0010207: photosystem II assembly2.49E-02
218GO:0006839: mitochondrial transport2.49E-02
219GO:0010020: chloroplast fission2.49E-02
220GO:0009934: regulation of meristem structural organization2.49E-02
221GO:0006631: fatty acid metabolic process2.60E-02
222GO:0071732: cellular response to nitric oxide2.70E-02
223GO:0010030: positive regulation of seed germination2.70E-02
224GO:0070588: calcium ion transmembrane transport2.70E-02
225GO:0008283: cell proliferation2.82E-02
226GO:0010025: wax biosynthetic process2.91E-02
227GO:0009833: plant-type primary cell wall biogenesis2.91E-02
228GO:0006071: glycerol metabolic process2.91E-02
229GO:0019344: cysteine biosynthetic process3.14E-02
230GO:0009116: nucleoside metabolic process3.14E-02
231GO:0009944: polarity specification of adaxial/abaxial axis3.14E-02
232GO:0030150: protein import into mitochondrial matrix3.14E-02
233GO:0051017: actin filament bundle assembly3.14E-02
234GO:0007010: cytoskeleton organization3.14E-02
235GO:0009965: leaf morphogenesis3.17E-02
236GO:0051302: regulation of cell division3.37E-02
237GO:0043622: cortical microtubule organization3.37E-02
238GO:0006825: copper ion transport3.37E-02
239GO:0009664: plant-type cell wall organization3.54E-02
240GO:0009814: defense response, incompatible interaction3.84E-02
241GO:0030154: cell differentiation3.84E-02
242GO:2000022: regulation of jasmonic acid mediated signaling pathway3.84E-02
243GO:0006730: one-carbon metabolic process3.84E-02
244GO:0031348: negative regulation of defense response3.84E-02
245GO:0080092: regulation of pollen tube growth3.84E-02
246GO:0051603: proteolysis involved in cellular protein catabolic process3.92E-02
247GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.08E-02
248GO:0010082: regulation of root meristem growth4.08E-02
249GO:0071369: cellular response to ethylene stimulus4.08E-02
250GO:0001944: vasculature development4.08E-02
251GO:0009826: unidimensional cell growth4.11E-02
252GO:0010214: seed coat development4.33E-02
253GO:0009306: protein secretion4.33E-02
254GO:0048367: shoot system development4.62E-02
255GO:0048653: anther development4.85E-02
256GO:0042631: cellular response to water deprivation4.85E-02
257GO:0000271: polysaccharide biosynthetic process4.85E-02
258GO:0042335: cuticle development4.85E-02
259GO:0008033: tRNA processing4.85E-02
260GO:0010087: phloem or xylem histogenesis4.85E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
3GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
4GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
5GO:0019808: polyamine binding0.00E+00
6GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
7GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
8GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
9GO:0004056: argininosuccinate lyase activity0.00E+00
10GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.92E-04
11GO:0050139: nicotinate-N-glucosyltransferase activity5.66E-04
12GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.66E-04
13GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.66E-04
14GO:0004813: alanine-tRNA ligase activity5.66E-04
15GO:0004008: copper-exporting ATPase activity5.66E-04
16GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.66E-04
17GO:0010285: L,L-diaminopimelate aminotransferase activity5.66E-04
18GO:0030570: pectate lyase activity6.58E-04
19GO:0016788: hydrolase activity, acting on ester bonds8.63E-04
20GO:0016829: lyase activity9.72E-04
21GO:0003747: translation release factor activity1.12E-03
22GO:0009977: proton motive force dependent protein transmembrane transporter activity1.22E-03
23GO:0003938: IMP dehydrogenase activity1.22E-03
24GO:0102083: 7,8-dihydromonapterin aldolase activity1.22E-03
25GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.22E-03
26GO:0004150: dihydroneopterin aldolase activity1.22E-03
27GO:0003919: FMN adenylyltransferase activity1.22E-03
28GO:0050017: L-3-cyanoalanine synthase activity1.22E-03
29GO:0017118: lipoyltransferase activity1.22E-03
30GO:0043425: bHLH transcription factor binding1.22E-03
31GO:0004805: trehalose-phosphatase activity1.54E-03
32GO:0052689: carboxylic ester hydrolase activity1.55E-03
33GO:0070330: aromatase activity2.00E-03
34GO:0008083: growth factor activity2.62E-03
35GO:0052655: L-valine transaminase activity2.90E-03
36GO:0001872: (1->3)-beta-D-glucan binding2.90E-03
37GO:0003999: adenine phosphoribosyltransferase activity2.90E-03
38GO:0016149: translation release factor activity, codon specific2.90E-03
39GO:0017172: cysteine dioxygenase activity2.90E-03
40GO:0052656: L-isoleucine transaminase activity2.90E-03
41GO:0047627: adenylylsulfatase activity2.90E-03
42GO:0043023: ribosomal large subunit binding2.90E-03
43GO:0052654: L-leucine transaminase activity2.90E-03
44GO:0004845: uracil phosphoribosyltransferase activity3.91E-03
45GO:0004345: glucose-6-phosphate dehydrogenase activity3.91E-03
46GO:0080032: methyl jasmonate esterase activity3.91E-03
47GO:0016987: sigma factor activity3.91E-03
48GO:0009044: xylan 1,4-beta-xylosidase activity3.91E-03
49GO:0043015: gamma-tubulin binding3.91E-03
50GO:0004084: branched-chain-amino-acid transaminase activity3.91E-03
51GO:0019199: transmembrane receptor protein kinase activity3.91E-03
52GO:0042277: peptide binding3.91E-03
53GO:0046556: alpha-L-arabinofuranosidase activity3.91E-03
54GO:0001053: plastid sigma factor activity3.91E-03
55GO:0004176: ATP-dependent peptidase activity4.43E-03
56GO:0004252: serine-type endopeptidase activity4.48E-03
57GO:0018685: alkane 1-monooxygenase activity5.02E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor5.02E-03
59GO:0004040: amidase activity5.02E-03
60GO:0004605: phosphatidate cytidylyltransferase activity6.22E-03
61GO:1990714: hydroxyproline O-galactosyltransferase activity6.22E-03
62GO:0016208: AMP binding6.22E-03
63GO:0042578: phosphoric ester hydrolase activity6.22E-03
64GO:0008519: ammonium transmembrane transporter activity6.22E-03
65GO:0016301: kinase activity6.39E-03
66GO:0004124: cysteine synthase activity7.52E-03
67GO:0008195: phosphatidate phosphatase activity7.52E-03
68GO:0004849: uridine kinase activity7.52E-03
69GO:0003730: mRNA 3'-UTR binding7.52E-03
70GO:0004144: diacylglycerol O-acyltransferase activity7.52E-03
71GO:0003872: 6-phosphofructokinase activity8.91E-03
72GO:0043022: ribosome binding1.04E-02
73GO:0004674: protein serine/threonine kinase activity1.06E-02
74GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.19E-02
75GO:0005375: copper ion transmembrane transporter activity1.19E-02
76GO:0016597: amino acid binding1.24E-02
77GO:0009672: auxin:proton symporter activity1.53E-02
78GO:0005381: iron ion transmembrane transporter activity1.53E-02
79GO:0030247: polysaccharide binding1.55E-02
80GO:0004713: protein tyrosine kinase activity1.71E-02
81GO:0005089: Rho guanyl-nucleotide exchange factor activity1.89E-02
82GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.99E-02
83GO:0000976: transcription regulatory region sequence-specific DNA binding2.08E-02
84GO:0000049: tRNA binding2.08E-02
85GO:0005262: calcium channel activity2.28E-02
86GO:0004022: alcohol dehydrogenase (NAD) activity2.28E-02
87GO:0004565: beta-galactosidase activity2.28E-02
88GO:0010329: auxin efflux transmembrane transporter activity2.28E-02
89GO:0015266: protein channel activity2.28E-02
90GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.28E-02
91GO:0004089: carbonate dehydratase activity2.28E-02
92GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.49E-02
93GO:0008017: microtubule binding2.65E-02
94GO:0004185: serine-type carboxypeptidase activity2.82E-02
95GO:0005528: FK506 binding3.14E-02
96GO:0003714: transcription corepressor activity3.14E-02
97GO:0015079: potassium ion transmembrane transporter activity3.37E-02
98GO:0033612: receptor serine/threonine kinase binding3.60E-02
99GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.84E-02
100GO:0005524: ATP binding3.92E-02
101GO:0016760: cellulose synthase (UDP-forming) activity4.08E-02
102GO:0003727: single-stranded RNA binding4.33E-02
103GO:0047134: protein-disulfide reductase activity4.59E-02
104GO:0004650: polygalacturonase activity4.91E-02
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Gene type



Gene DE type