co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
2	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
3	GO:0001881: receptor recycling	0.00E+00
4	GO:0072722: response to amitrole	0.00E+00
5	GO:0010055: atrichoblast differentiation	0.00E+00
6	GO:0006903: vesicle targeting	0.00E+00
7	GO:0006511: ubiquitin-dependent protein catabolic process	2.25E-08
8	GO:0045454: cell redox homeostasis	5.84E-06
9	GO:0046686: response to cadmium ion	6.32E-05
10	GO:0006623: protein targeting to vacuole	1.50E-04
11	GO:0042964: thioredoxin reduction	1.93E-04
12	GO:0006680: glucosylceramide catabolic process	1.93E-04
13	GO:0031338: regulation of vesicle fusion	1.93E-04
14	GO:0006474: N-terminal protein amino acid acetylation	1.93E-04
15	GO:0032107: regulation of response to nutrient levels	1.93E-04
16	GO:0035266: meristem growth	1.93E-04
17	GO:0007292: female gamete generation	1.93E-04
18	GO:0051788: response to misfolded protein	4.33E-04
19	GO:0015865: purine nucleotide transport	4.33E-04
20	GO:0018345: protein palmitoylation	4.33E-04
21	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	4.33E-04
22	GO:0051252: regulation of RNA metabolic process	4.33E-04
23	GO:0043132: NAD transport	4.33E-04
24	GO:0080183: response to photooxidative stress	4.33E-04
25	GO:0010540: basipetal auxin transport	5.65E-04
26	GO:0060968: regulation of gene silencing	7.06E-04
27	GO:0008333: endosome to lysosome transport	7.06E-04
28	GO:0055074: calcium ion homeostasis	7.06E-04
29	GO:0044375: regulation of peroxisome size	7.06E-04
30	GO:0090630: activation of GTPase activity	7.06E-04
31	GO:0045836: positive regulation of meiotic nuclear division	7.06E-04
32	GO:0018342: protein prenylation	7.06E-04
33	GO:0010272: response to silver ion	7.06E-04
34	GO:0006874: cellular calcium ion homeostasis	8.55E-04
35	GO:0016998: cell wall macromolecule catabolic process	9.35E-04
36	GO:0046902: regulation of mitochondrial membrane permeability	1.01E-03
37	GO:0015858: nucleoside transport	1.01E-03
38	GO:0006612: protein targeting to membrane	1.01E-03
39	GO:0006893: Golgi to plasma membrane transport	1.01E-03
40	GO:0048577: negative regulation of short-day photoperiodism, flowering	1.01E-03
41	GO:0010227: floral organ abscission	1.11E-03
42	GO:0042147: retrograde transport, endosome to Golgi	1.30E-03
43	GO:0006536: glutamate metabolic process	1.34E-03
44	GO:0033320: UDP-D-xylose biosynthetic process	1.34E-03
45	GO:0045927: positive regulation of growth	1.70E-03
46	GO:0046283: anthocyanin-containing compound metabolic process	1.70E-03
47	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.70E-03
48	GO:0006891: intra-Golgi vesicle-mediated transport	1.85E-03
49	GO:0043248: proteasome assembly	2.10E-03
50	GO:0042732: D-xylose metabolic process	2.10E-03
51	GO:0042176: regulation of protein catabolic process	2.10E-03
52	GO:0003006: developmental process involved in reproduction	2.10E-03
53	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.10E-03
54	GO:0048827: phyllome development	2.10E-03
55	GO:0048232: male gamete generation	2.10E-03
56	GO:0030163: protein catabolic process	2.11E-03
57	GO:0055085: transmembrane transport	2.35E-03
58	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.52E-03
59	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	2.52E-03
60	GO:0048280: vesicle fusion with Golgi apparatus	2.52E-03
61	GO:0015937: coenzyme A biosynthetic process	2.96E-03
62	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	2.96E-03
63	GO:0006888: ER to Golgi vesicle-mediated transport	3.14E-03
64	GO:0010078: maintenance of root meristem identity	3.43E-03
65	GO:0006499: N-terminal protein myristoylation	3.83E-03
66	GO:0009407: toxin catabolic process	3.83E-03
67	GO:0060321: acceptance of pollen	3.93E-03
68	GO:0007186: G-protein coupled receptor signaling pathway	3.93E-03
69	GO:0009657: plastid organization	3.93E-03
70	GO:0019430: removal of superoxide radicals	3.93E-03
71	GO:0010204: defense response signaling pathway, resistance gene-independent	3.93E-03
72	GO:0048527: lateral root development	4.01E-03
73	GO:0046685: response to arsenic-containing substance	4.44E-03
74	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.99E-03
75	GO:0008202: steroid metabolic process	4.99E-03
76	GO:0006896: Golgi to vacuole transport	5.55E-03
77	GO:0006032: chitin catabolic process	5.55E-03
78	GO:0048829: root cap development	5.55E-03
79	GO:0072593: reactive oxygen species metabolic process	6.13E-03
80	GO:0043085: positive regulation of catalytic activity	6.13E-03
81	GO:0000272: polysaccharide catabolic process	6.13E-03
82	GO:0010015: root morphogenesis	6.13E-03
83	GO:0009846: pollen germination	7.11E-03
84	GO:0010102: lateral root morphogenesis	7.36E-03
85	GO:0006807: nitrogen compound metabolic process	7.36E-03
86	GO:0055046: microgametogenesis	7.36E-03
87	GO:0051603: proteolysis involved in cellular protein catabolic process	7.90E-03
88	GO:0009933: meristem structural organization	8.01E-03
89	GO:0007034: vacuolar transport	8.01E-03
90	GO:0009266: response to temperature stimulus	8.01E-03
91	GO:0009225: nucleotide-sugar metabolic process	8.67E-03
92	GO:0010039: response to iron ion	8.67E-03
93	GO:0090351: seedling development	8.67E-03
94	GO:0048316: seed development	9.32E-03
95	GO:0034976: response to endoplasmic reticulum stress	9.35E-03
96	GO:0000027: ribosomal large subunit assembly	1.01E-02
97	GO:0009624: response to nematode	1.09E-02
98	GO:0051321: meiotic cell cycle	1.15E-02
99	GO:0030433: ubiquitin-dependent ERAD pathway	1.23E-02
100	GO:0080092: regulation of pollen tube growth	1.23E-02
101	GO:0071456: cellular response to hypoxia	1.23E-02
102	GO:0006468: protein phosphorylation	1.32E-02
103	GO:0009058: biosynthetic process	1.44E-02
104	GO:0008284: positive regulation of cell proliferation	1.47E-02
105	GO:0016117: carotenoid biosynthetic process	1.47E-02
106	GO:0010118: stomatal movement	1.55E-02
107	GO:0006662: glycerol ether metabolic process	1.63E-02
108	GO:0048868: pollen tube development	1.63E-02
109	GO:0048544: recognition of pollen	1.72E-02
110	GO:0040008: regulation of growth	1.80E-02
111	GO:0010183: pollen tube guidance	1.81E-02
112	GO:0055072: iron ion homeostasis	1.81E-02
113	GO:0042742: defense response to bacterium	1.86E-02
114	GO:0010150: leaf senescence	1.89E-02
115	GO:0032502: developmental process	1.99E-02
116	GO:0009630: gravitropism	1.99E-02
117	GO:0006914: autophagy	2.18E-02
118	GO:0009567: double fertilization forming a zygote and endosperm	2.18E-02
119	GO:0006904: vesicle docking involved in exocytosis	2.27E-02
120	GO:0016579: protein deubiquitination	2.37E-02
121	GO:0009615: response to virus	2.47E-02
122	GO:0009416: response to light stimulus	2.55E-02
123	GO:0015031: protein transport	2.66E-02
124	GO:0006906: vesicle fusion	2.67E-02
125	GO:0009627: systemic acquired resistance	2.67E-02
126	GO:0006950: response to stress	2.77E-02
127	GO:0016049: cell growth	2.88E-02
128	GO:0010311: lateral root formation	3.09E-02
129	GO:0048767: root hair elongation	3.09E-02
130	GO:0009860: pollen tube growth	3.15E-02
131	GO:0006811: ion transport	3.20E-02
132	GO:0010043: response to zinc ion	3.31E-02
133	GO:0009910: negative regulation of flower development	3.31E-02
134	GO:0045087: innate immune response	3.53E-02
135	GO:0034599: cellular response to oxidative stress	3.64E-02
136	GO:0006099: tricarboxylic acid cycle	3.64E-02
137	GO:0055114: oxidation-reduction process	3.72E-02
138	GO:0006839: mitochondrial transport	3.87E-02
139	GO:0044550: secondary metabolite biosynthetic process	3.93E-02
140	GO:0006887: exocytosis	3.99E-02
141	GO:0042542: response to hydrogen peroxide	4.11E-02
142	GO:0006886: intracellular protein transport	4.46E-02
143	GO:0009644: response to high light intensity	4.47E-02
144	GO:0009636: response to toxic substance	4.59E-02
145	GO:0009965: leaf morphogenesis	4.59E-02
146	GO:0006855: drug transmembrane transport	4.71E-02
147	GO:0000165: MAPK cascade	4.84E-02
148	GO:0042538: hyperosmotic salinity response	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0044610: FMN transmembrane transporter activity	0.00E+00
3	GO:0016504: peptidase activator activity	0.00E+00
4	GO:0004298: threonine-type endopeptidase activity	1.54E-06
5	GO:0004791: thioredoxin-disulfide reductase activity	1.35E-04
6	GO:0048037: cofactor binding	1.93E-04
7	GO:0000386: second spliceosomal transesterification activity	1.93E-04
8	GO:0004348: glucosylceramidase activity	1.93E-04
9	GO:0004633: phosphopantothenoylcysteine decarboxylase activity	1.93E-04
10	GO:0015230: FAD transmembrane transporter activity	1.93E-04
11	GO:2001147: camalexin binding	1.93E-04
12	GO:2001227: quercitrin binding	1.93E-04
13	GO:0008559: xenobiotic-transporting ATPase activity	3.85E-04
14	GO:0051724: NAD transporter activity	4.33E-04
15	GO:0004775: succinate-CoA ligase (ADP-forming) activity	4.33E-04
16	GO:0008428: ribonuclease inhibitor activity	4.33E-04
17	GO:1990585: hydroxyproline O-arabinosyltransferase activity	4.33E-04
18	GO:0051980: iron-nicotianamine transmembrane transporter activity	4.33E-04
19	GO:0008517: folic acid transporter activity	4.33E-04
20	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	4.33E-04
21	GO:0004776: succinate-CoA ligase (GDP-forming) activity	4.33E-04
22	GO:0004596: peptide alpha-N-acetyltransferase activity	4.33E-04
23	GO:0015228: coenzyme A transmembrane transporter activity	4.33E-04
24	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.01E-04
25	GO:0005217: intracellular ligand-gated ion channel activity	6.32E-04
26	GO:0004970: ionotropic glutamate receptor activity	6.32E-04
27	GO:0004351: glutamate decarboxylase activity	1.01E-03
28	GO:0047134: protein-disulfide reductase activity	1.30E-03
29	GO:0070628: proteasome binding	1.34E-03
30	GO:0016004: phospholipase activator activity	1.34E-03
31	GO:0009916: alternative oxidase activity	1.34E-03
32	GO:0008233: peptidase activity	1.45E-03
33	GO:0008948: oxaloacetate decarboxylase activity	1.70E-03
34	GO:0080122: AMP transmembrane transporter activity	1.70E-03
35	GO:0017137: Rab GTPase binding	1.70E-03
36	GO:0005471: ATP:ADP antiporter activity	1.70E-03
37	GO:0015035: protein disulfide oxidoreductase activity	1.71E-03
38	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.10E-03
39	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.10E-03
40	GO:0036402: proteasome-activating ATPase activity	2.10E-03
41	GO:0048040: UDP-glucuronate decarboxylase activity	2.10E-03
42	GO:0005347: ATP transmembrane transporter activity	2.52E-03
43	GO:0015217: ADP transmembrane transporter activity	2.52E-03
44	GO:0070403: NAD+ binding	2.52E-03
45	GO:0043295: glutathione binding	2.96E-03
46	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.43E-03
47	GO:0008142: oxysterol binding	3.93E-03
48	GO:0000149: SNARE binding	4.80E-03
49	GO:0004364: glutathione transferase activity	5.44E-03
50	GO:0030234: enzyme regulator activity	5.55E-03
51	GO:0004568: chitinase activity	5.55E-03
52	GO:0008047: enzyme activator activity	5.55E-03
53	GO:0005484: SNAP receptor activity	5.66E-03
54	GO:0008794: arsenate reductase (glutaredoxin) activity	6.13E-03
55	GO:0008327: methyl-CpG binding	6.13E-03
56	GO:0015198: oligopeptide transporter activity	6.73E-03
57	GO:0004565: beta-galactosidase activity	7.36E-03
58	GO:0017025: TBP-class protein binding	8.67E-03
59	GO:0008061: chitin binding	8.67E-03
60	GO:0004867: serine-type endopeptidase inhibitor activity	8.67E-03
61	GO:0001046: core promoter sequence-specific DNA binding	1.01E-02
62	GO:0009055: electron carrier activity	1.35E-02
63	GO:0003756: protein disulfide isomerase activity	1.39E-02
64	GO:0003727: single-stranded RNA binding	1.39E-02
65	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.40E-02
66	GO:0030170: pyridoxal phosphate binding	1.52E-02
67	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.55E-02
68	GO:0008080: N-acetyltransferase activity	1.63E-02
69	GO:0001085: RNA polymerase II transcription factor binding	1.63E-02
70	GO:0010181: FMN binding	1.72E-02
71	GO:0016853: isomerase activity	1.72E-02
72	GO:0004872: receptor activity	1.81E-02
73	GO:0048038: quinone binding	1.90E-02
74	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.90E-02
75	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.90E-02
76	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.08E-02
77	GO:0008237: metallopeptidase activity	2.27E-02
78	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.40E-02
79	GO:0030247: polysaccharide binding	2.77E-02
80	GO:0004683: calmodulin-dependent protein kinase activity	2.77E-02
81	GO:0000287: magnesium ion binding	2.87E-02
82	GO:0004601: peroxidase activity	2.92E-02
83	GO:0005096: GTPase activator activity	3.09E-02
84	GO:0004674: protein serine/threonine kinase activity	3.20E-02
85	GO:0005524: ATP binding	3.22E-02
86	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.31E-02
87	GO:0016301: kinase activity	3.47E-02
88	GO:0004497: monooxygenase activity	3.62E-02
89	GO:0020037: heme binding	3.65E-02
90	GO:0051539: 4 iron, 4 sulfur cluster binding	3.87E-02
91	GO:0019825: oxygen binding	3.96E-02
92	GO:0005516: calmodulin binding	4.23E-02
93	GO:0051537: 2 iron, 2 sulfur cluster binding	4.47E-02
94	GO:0005198: structural molecule activity	4.59E-02
95	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.66E-02