Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G04260

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0009606: tropism0.00E+00
3GO:0090322: regulation of superoxide metabolic process0.00E+00
4GO:1903224: regulation of endodermal cell differentiation0.00E+00
5GO:0080127: fruit septum development0.00E+00
6GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
7GO:0045184: establishment of protein localization0.00E+00
8GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
9GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
10GO:0045014: negative regulation of transcription by glucose0.00E+00
11GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
12GO:0009451: RNA modification8.78E-07
13GO:0006518: peptide metabolic process4.84E-05
14GO:0009793: embryo development ending in seed dormancy5.16E-05
15GO:0009657: plastid organization5.54E-05
16GO:0009734: auxin-activated signaling pathway1.46E-04
17GO:2000038: regulation of stomatal complex development1.75E-04
18GO:0042793: transcription from plastid promoter3.74E-04
19GO:0009913: epidermal cell differentiation3.74E-04
20GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.81E-04
21GO:1901259: chloroplast rRNA processing4.98E-04
22GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.77E-04
23GO:0070509: calcium ion import5.77E-04
24GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.77E-04
25GO:0090558: plant epidermis development5.77E-04
26GO:0010063: positive regulation of trichoblast fate specification5.77E-04
27GO:1903866: palisade mesophyll development5.77E-04
28GO:0035987: endodermal cell differentiation5.77E-04
29GO:0006436: tryptophanyl-tRNA aminoacylation5.77E-04
30GO:0034757: negative regulation of iron ion transport5.77E-04
31GO:0042659: regulation of cell fate specification5.77E-04
32GO:0010497: plasmodesmata-mediated intercellular transport9.63E-04
33GO:0007389: pattern specification process9.63E-04
34GO:0000373: Group II intron splicing1.15E-03
35GO:0009967: positive regulation of signal transduction1.24E-03
36GO:0060359: response to ammonium ion1.24E-03
37GO:0048255: mRNA stabilization1.24E-03
38GO:1902326: positive regulation of chlorophyll biosynthetic process1.24E-03
39GO:0010271: regulation of chlorophyll catabolic process1.24E-03
40GO:0018026: peptidyl-lysine monomethylation1.24E-03
41GO:0009662: etioplast organization1.24E-03
42GO:1900033: negative regulation of trichome patterning1.24E-03
43GO:1904143: positive regulation of carotenoid biosynthetic process1.24E-03
44GO:0080009: mRNA methylation1.24E-03
45GO:2000123: positive regulation of stomatal complex development1.24E-03
46GO:1900865: chloroplast RNA modification1.36E-03
47GO:0010583: response to cyclopentenone1.45E-03
48GO:0040008: regulation of growth1.45E-03
49GO:0006535: cysteine biosynthetic process from serine1.59E-03
50GO:0048829: root cap development1.59E-03
51GO:0080117: secondary growth2.04E-03
52GO:0044210: 'de novo' CTP biosynthetic process2.04E-03
53GO:0090391: granum assembly2.04E-03
54GO:0042780: tRNA 3'-end processing2.04E-03
55GO:0001578: microtubule bundle formation2.04E-03
56GO:0043157: response to cation stress2.04E-03
57GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.04E-03
58GO:0045910: negative regulation of DNA recombination2.04E-03
59GO:0090708: specification of plant organ axis polarity2.04E-03
60GO:0010027: thylakoid membrane organization2.14E-03
61GO:0010588: cotyledon vascular tissue pattern formation2.40E-03
62GO:0006508: proteolysis2.80E-03
63GO:0010306: rhamnogalacturonan II biosynthetic process2.96E-03
64GO:0007276: gamete generation2.96E-03
65GO:0019048: modulation by virus of host morphology or physiology2.96E-03
66GO:0046739: transport of virus in multicellular host2.96E-03
67GO:0031048: chromatin silencing by small RNA2.96E-03
68GO:0051289: protein homotetramerization2.96E-03
69GO:0010371: regulation of gibberellin biosynthetic process2.96E-03
70GO:1902476: chloride transmembrane transport2.96E-03
71GO:0010071: root meristem specification2.96E-03
72GO:0051513: regulation of monopolar cell growth2.96E-03
73GO:0010239: chloroplast mRNA processing2.96E-03
74GO:0009416: response to light stimulus3.00E-03
75GO:0048481: plant ovule development3.01E-03
76GO:0009658: chloroplast organization3.41E-03
77GO:0019344: cysteine biosynthetic process3.76E-03
78GO:0006865: amino acid transport3.85E-03
79GO:0030104: water homeostasis4.00E-03
80GO:0046656: folic acid biosynthetic process4.00E-03
81GO:0006221: pyrimidine nucleotide biosynthetic process4.00E-03
82GO:0006021: inositol biosynthetic process4.00E-03
83GO:0051567: histone H3-K9 methylation4.00E-03
84GO:0006808: regulation of nitrogen utilization4.00E-03
85GO:0006479: protein methylation4.00E-03
86GO:0048629: trichome patterning4.00E-03
87GO:1900864: mitochondrial RNA modification4.00E-03
88GO:0051322: anaphase4.00E-03
89GO:0006418: tRNA aminoacylation for protein translation4.15E-03
90GO:0003333: amino acid transmembrane transport4.57E-03
91GO:0030308: negative regulation of cell growth5.13E-03
92GO:0010375: stomatal complex patterning5.13E-03
93GO:0016120: carotene biosynthetic process5.13E-03
94GO:0048497: maintenance of floral organ identity5.13E-03
95GO:0009107: lipoate biosynthetic process5.13E-03
96GO:0016123: xanthophyll biosynthetic process5.13E-03
97GO:0032876: negative regulation of DNA endoreduplication5.13E-03
98GO:0071215: cellular response to abscisic acid stimulus5.47E-03
99GO:0042127: regulation of cell proliferation5.95E-03
100GO:0006655: phosphatidylglycerol biosynthetic process6.36E-03
101GO:1902456: regulation of stomatal opening6.36E-03
102GO:0016554: cytidine to uridine editing6.36E-03
103GO:0048831: regulation of shoot system development6.36E-03
104GO:0003006: developmental process involved in reproduction6.36E-03
105GO:0010315: auxin efflux6.36E-03
106GO:0018258: protein O-linked glycosylation via hydroxyproline6.36E-03
107GO:0016458: gene silencing6.36E-03
108GO:0009643: photosynthetic acclimation6.36E-03
109GO:0010405: arabinogalactan protein metabolic process6.36E-03
110GO:0009959: negative gravitropism6.36E-03
111GO:0009733: response to auxin6.80E-03
112GO:0008033: tRNA processing6.98E-03
113GO:0010087: phloem or xylem histogenesis6.98E-03
114GO:0010305: leaf vascular tissue pattern formation7.53E-03
115GO:0048868: pollen tube development7.53E-03
116GO:0009082: branched-chain amino acid biosynthetic process7.69E-03
117GO:0006458: 'de novo' protein folding7.69E-03
118GO:0042026: protein refolding7.69E-03
119GO:0009942: longitudinal axis specification7.69E-03
120GO:0048509: regulation of meristem development7.69E-03
121GO:0046654: tetrahydrofolate biosynthetic process7.69E-03
122GO:0009099: valine biosynthetic process7.69E-03
123GO:2000037: regulation of stomatal complex patterning7.69E-03
124GO:0010310: regulation of hydrogen peroxide metabolic process7.69E-03
125GO:2000067: regulation of root morphogenesis7.69E-03
126GO:0009955: adaxial/abaxial pattern specification7.69E-03
127GO:0048544: recognition of pollen8.10E-03
128GO:0006364: rRNA processing8.28E-03
129GO:0048825: cotyledon development8.70E-03
130GO:0006821: chloride transport9.10E-03
131GO:0048437: floral organ development9.10E-03
132GO:0009396: folic acid-containing compound biosynthetic process9.10E-03
133GO:0010103: stomatal complex morphogenesis9.10E-03
134GO:0006401: RNA catabolic process9.10E-03
135GO:0006955: immune response9.10E-03
136GO:0048528: post-embryonic root development9.10E-03
137GO:0009630: gravitropism9.97E-03
138GO:0006402: mRNA catabolic process1.06E-02
139GO:0001522: pseudouridine synthesis1.06E-02
140GO:0009642: response to light intensity1.06E-02
141GO:0046620: regulation of organ growth1.06E-02
142GO:0048766: root hair initiation1.06E-02
143GO:0010492: maintenance of shoot apical meristem identity1.06E-02
144GO:0055075: potassium ion homeostasis1.06E-02
145GO:0000105: histidine biosynthetic process1.06E-02
146GO:0048564: photosystem I assembly1.06E-02
147GO:0048367: shoot system development1.07E-02
148GO:0010252: auxin homeostasis1.13E-02
149GO:0009828: plant-type cell wall loosening1.13E-02
150GO:0001510: RNA methylation1.22E-02
151GO:0009097: isoleucine biosynthetic process1.22E-02
152GO:0032544: plastid translation1.22E-02
153GO:0019430: removal of superoxide radicals1.22E-02
154GO:0009553: embryo sac development1.25E-02
155GO:0006396: RNA processing1.35E-02
156GO:0048507: meristem development1.39E-02
157GO:0048589: developmental growth1.39E-02
158GO:0000902: cell morphogenesis1.39E-02
159GO:0006457: protein folding1.50E-02
160GO:2000280: regulation of root development1.56E-02
161GO:0006349: regulation of gene expression by genetic imprinting1.56E-02
162GO:0031425: chloroplast RNA processing1.56E-02
163GO:0042761: very long-chain fatty acid biosynthetic process1.56E-02
164GO:0030422: production of siRNA involved in RNA interference1.74E-02
165GO:0045036: protein targeting to chloroplast1.74E-02
166GO:0006298: mismatch repair1.74E-02
167GO:0016441: posttranscriptional gene silencing1.74E-02
168GO:0006259: DNA metabolic process1.74E-02
169GO:0010048: vernalization response1.74E-02
170GO:0000160: phosphorelay signal transduction system1.86E-02
171GO:0009845: seed germination1.91E-02
172GO:0006265: DNA topological change1.93E-02
173GO:0009750: response to fructose1.93E-02
174GO:0016485: protein processing1.93E-02
175GO:0009790: embryo development2.11E-02
176GO:0010152: pollen maturation2.13E-02
177GO:0016024: CDP-diacylglycerol biosynthetic process2.13E-02
178GO:0045037: protein import into chloroplast stroma2.13E-02
179GO:0010582: floral meristem determinacy2.13E-02
180GO:0008361: regulation of cell size2.13E-02
181GO:0006790: sulfur compound metabolic process2.13E-02
182GO:0012501: programmed cell death2.13E-02
183GO:0010102: lateral root morphogenesis2.33E-02
184GO:0009691: cytokinin biosynthetic process2.33E-02
185GO:0010207: photosystem II assembly2.54E-02
186GO:0009887: animal organ morphogenesis2.54E-02
187GO:0048467: gynoecium development2.54E-02
188GO:0080188: RNA-directed DNA methylation2.76E-02
189GO:0070588: calcium ion transmembrane transport2.76E-02
190GO:0046854: phosphatidylinositol phosphorylation2.76E-02
191GO:0009926: auxin polar transport2.91E-02
192GO:0006833: water transport2.98E-02
193GO:0006355: regulation of transcription, DNA-templated3.18E-02
194GO:0080147: root hair cell development3.21E-02
195GO:0048364: root development3.34E-02
196GO:0010073: meristem maintenance3.44E-02
197GO:0051302: regulation of cell division3.44E-02
198GO:0019953: sexual reproduction3.44E-02
199GO:0009664: plant-type cell wall organization3.65E-02
200GO:0031408: oxylipin biosynthetic process3.68E-02
201GO:0006306: DNA methylation3.68E-02
202GO:0016998: cell wall macromolecule catabolic process3.68E-02
203GO:0015992: proton transport3.68E-02
204GO:0010431: seed maturation3.68E-02
205GO:0061077: chaperone-mediated protein folding3.68E-02
206GO:0009736: cytokinin-activated signaling pathway3.91E-02
207GO:0051603: proteolysis involved in cellular protein catabolic process4.05E-02
208GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.18E-02
209GO:0010082: regulation of root meristem growth4.18E-02
210GO:0006351: transcription, DNA-templated4.31E-02
211GO:0010091: trichome branching4.43E-02
212GO:0048443: stamen development4.43E-02
213GO:0006284: base-excision repair4.43E-02
214GO:0009306: protein secretion4.43E-02
215GO:0070417: cellular response to cold4.69E-02
216GO:0006357: regulation of transcription from RNA polymerase II promoter4.71E-02
217GO:0048316: seed development4.76E-02
218GO:0000226: microtubule cytoskeleton organization4.96E-02
219GO:0080022: primary root development4.96E-02
220GO:0010501: RNA secondary structure unwinding4.96E-02
221GO:0010118: stomatal movement4.96E-02
222GO:0042631: cellular response to water deprivation4.96E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
3GO:0004401: histidinol-phosphatase activity0.00E+00
4GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
5GO:0070009: serine-type aminopeptidase activity0.00E+00
6GO:0052834: inositol monophosphate phosphatase activity0.00E+00
7GO:0004519: endonuclease activity1.76E-07
8GO:0003723: RNA binding4.42E-06
9GO:0004222: metalloendopeptidase activity6.00E-06
10GO:0017150: tRNA dihydrouridine synthase activity4.84E-05
11GO:0008173: RNA methyltransferase activity5.54E-05
12GO:0004124: cysteine synthase activity4.98E-04
13GO:0042834: peptidoglycan binding5.77E-04
14GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.77E-04
15GO:0016274: protein-arginine N-methyltransferase activity5.77E-04
16GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.77E-04
17GO:0004156: dihydropteroate synthase activity5.77E-04
18GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity5.77E-04
19GO:0052381: tRNA dimethylallyltransferase activity5.77E-04
20GO:0004830: tryptophan-tRNA ligase activity5.77E-04
21GO:0004160: dihydroxy-acid dehydratase activity5.77E-04
22GO:0004654: polyribonucleotide nucleotidyltransferase activity5.77E-04
23GO:0010347: L-galactose-1-phosphate phosphatase activity5.77E-04
24GO:0004016: adenylate cyclase activity5.77E-04
25GO:0008168: methyltransferase activity8.20E-04
26GO:0000774: adenyl-nucleotide exchange factor activity1.24E-03
27GO:0008934: inositol monophosphate 1-phosphatase activity1.24E-03
28GO:0052833: inositol monophosphate 4-phosphatase activity1.24E-03
29GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.24E-03
30GO:0005078: MAP-kinase scaffold activity1.24E-03
31GO:0003988: acetyl-CoA C-acyltransferase activity1.24E-03
32GO:0009884: cytokinin receptor activity1.24E-03
33GO:0017118: lipoyltransferase activity1.24E-03
34GO:0016415: octanoyltransferase activity1.24E-03
35GO:0052832: inositol monophosphate 3-phosphatase activity1.24E-03
36GO:0009672: auxin:proton symporter activity1.36E-03
37GO:0008237: metallopeptidase activity1.84E-03
38GO:0042781: 3'-tRNA processing endoribonuclease activity2.04E-03
39GO:0016805: dipeptidase activity2.04E-03
40GO:0005034: osmosensor activity2.04E-03
41GO:0010329: auxin efflux transmembrane transporter activity2.40E-03
42GO:0009678: hydrogen-translocating pyrophosphatase activity2.96E-03
43GO:0003883: CTP synthase activity2.96E-03
44GO:0009041: uridylate kinase activity2.96E-03
45GO:0035197: siRNA binding2.96E-03
46GO:0001872: (1->3)-beta-D-glucan binding2.96E-03
47GO:0010328: auxin influx transmembrane transporter activity4.00E-03
48GO:0005253: anion channel activity4.00E-03
49GO:0004930: G-protein coupled receptor activity4.00E-03
50GO:0016279: protein-lysine N-methyltransferase activity4.00E-03
51GO:0010011: auxin binding4.00E-03
52GO:0016836: hydro-lyase activity4.00E-03
53GO:0019843: rRNA binding4.01E-03
54GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.89E-03
55GO:0004888: transmembrane signaling receptor activity5.13E-03
56GO:0005275: amine transmembrane transporter activity5.13E-03
57GO:0016773: phosphotransferase activity, alcohol group as acceptor5.13E-03
58GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.13E-03
59GO:0008725: DNA-3-methyladenine glycosylase activity5.13E-03
60GO:0030570: pectate lyase activity5.47E-03
61GO:0004784: superoxide dismutase activity6.36E-03
62GO:0005247: voltage-gated chloride channel activity6.36E-03
63GO:0030983: mismatched DNA binding6.36E-03
64GO:0004605: phosphatidate cytidylyltransferase activity6.36E-03
65GO:1990714: hydroxyproline O-galactosyltransferase activity6.36E-03
66GO:0004812: aminoacyl-tRNA ligase activity6.45E-03
67GO:0001085: RNA polymerase II transcription factor binding7.53E-03
68GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity7.69E-03
69GO:0004656: procollagen-proline 4-dioxygenase activity7.69E-03
70GO:0019900: kinase binding7.69E-03
71GO:0008195: phosphatidate phosphatase activity7.69E-03
72GO:0019901: protein kinase binding8.70E-03
73GO:0004427: inorganic diphosphatase activity9.10E-03
74GO:0015171: amino acid transmembrane transporter activity9.43E-03
75GO:0046872: metal ion binding1.13E-02
76GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.22E-02
77GO:0003724: RNA helicase activity1.22E-02
78GO:0051082: unfolded protein binding1.30E-02
79GO:0003700: transcription factor activity, sequence-specific DNA binding1.57E-02
80GO:0004673: protein histidine kinase activity1.74E-02
81GO:0044183: protein binding involved in protein folding1.93E-02
82GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.05E-02
83GO:0004521: endoribonuclease activity2.13E-02
84GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.31E-02
85GO:0003725: double-stranded RNA binding2.33E-02
86GO:0000175: 3'-5'-exoribonuclease activity2.33E-02
87GO:0004022: alcohol dehydrogenase (NAD) activity2.33E-02
88GO:0031072: heat shock protein binding2.33E-02
89GO:0000155: phosphorelay sensor kinase activity2.33E-02
90GO:0005262: calcium channel activity2.33E-02
91GO:0009982: pseudouridine synthase activity2.33E-02
92GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.54E-02
93GO:0051539: 4 iron, 4 sulfur cluster binding2.57E-02
94GO:0043565: sequence-specific DNA binding2.63E-02
95GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.71E-02
96GO:0004190: aspartic-type endopeptidase activity2.76E-02
97GO:0004185: serine-type carboxypeptidase activity2.91E-02
98GO:0031418: L-ascorbic acid binding3.21E-02
99GO:0015293: symporter activity3.27E-02
100GO:0043424: protein histidine kinase binding3.44E-02
101GO:0015079: potassium ion transmembrane transporter activity3.44E-02
102GO:0051087: chaperone binding3.44E-02
103GO:0004176: ATP-dependent peptidase activity3.68E-02
104GO:0008408: 3'-5' exonuclease activity3.68E-02
105GO:0003690: double-stranded DNA binding4.05E-02
106GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.17E-02
107GO:0003777: microtubule motor activity4.33E-02
108GO:0003727: single-stranded RNA binding4.43E-02
109GO:0016788: hydrolase activity, acting on ester bonds4.57E-02
110GO:0018024: histone-lysine N-methyltransferase activity4.69E-02
111GO:0047134: protein-disulfide reductase activity4.69E-02
112GO:0003682: chromatin binding4.78E-02
113GO:0003677: DNA binding4.81E-02
<
Gene type



Gene DE type