co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04184

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
2	GO:0035884: arabinan biosynthetic process	0.00E+00
3	GO:0097164: ammonium ion metabolic process	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
6	GO:0045184: establishment of protein localization	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:0015843: methylammonium transport	0.00E+00
9	GO:0031222: arabinan catabolic process	0.00E+00
10	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
11	GO:0046719: regulation by virus of viral protein levels in host cell	0.00E+00
12	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
13	GO:1901698: response to nitrogen compound	0.00E+00
14	GO:0090627: plant epidermal cell differentiation	0.00E+00
15	GO:0009606: tropism	0.00E+00
16	GO:0046620: regulation of organ growth	8.33E-11
17	GO:0042793: transcription from plastid promoter	6.84E-10
18	GO:0009734: auxin-activated signaling pathway	1.59E-08
19	GO:0009733: response to auxin	4.15E-08
20	GO:0009658: chloroplast organization	7.49E-07
21	GO:0009451: RNA modification	1.19E-05
22	GO:0010569: regulation of double-strand break repair via homologous recombination	1.61E-05
23	GO:0009416: response to light stimulus	2.05E-05
24	GO:0009926: auxin polar transport	2.36E-05
25	GO:0042255: ribosome assembly	4.51E-05
26	GO:2000038: regulation of stomatal complex development	1.92E-04
27	GO:0046656: folic acid biosynthetic process	1.92E-04
28	GO:0009913: epidermal cell differentiation	4.06E-04
29	GO:0046654: tetrahydrofolate biosynthetic process	5.39E-04
30	GO:0016998: cell wall macromolecule catabolic process	6.04E-04
31	GO:0090558: plant epidermis development	6.10E-04
32	GO:0010063: positive regulation of trichoblast fate specification	6.10E-04
33	GO:1903866: palisade mesophyll development	6.10E-04
34	GO:0010480: microsporocyte differentiation	6.10E-04
35	GO:0035987: endodermal cell differentiation	6.10E-04
36	GO:0043609: regulation of carbon utilization	6.10E-04
37	GO:0006436: tryptophanyl-tRNA aminoacylation	6.10E-04
38	GO:0000066: mitochondrial ornithine transport	6.10E-04
39	GO:0034757: negative regulation of iron ion transport	6.10E-04
40	GO:0042659: regulation of cell fate specification	6.10E-04
41	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	6.10E-04
42	GO:1905039: carboxylic acid transmembrane transport	6.10E-04
43	GO:1905200: gibberellic acid transmembrane transport	6.10E-04
44	GO:0080112: seed growth	6.10E-04
45	GO:0006955: immune response	6.90E-04
46	GO:0048437: floral organ development	6.90E-04
47	GO:0006353: DNA-templated transcription, termination	8.59E-04
48	GO:0000105: histidine biosynthetic process	8.59E-04
49	GO:0007389: pattern specification process	1.04E-03
50	GO:0010271: regulation of chlorophyll catabolic process	1.31E-03
51	GO:0018026: peptidyl-lysine monomethylation	1.31E-03
52	GO:0071497: cellular response to freezing	1.31E-03
53	GO:0099402: plant organ development	1.31E-03
54	GO:0009662: etioplast organization	1.31E-03
55	GO:1900033: negative regulation of trichome patterning	1.31E-03
56	GO:1904143: positive regulation of carotenoid biosynthetic process	1.31E-03
57	GO:0080009: mRNA methylation	1.31E-03
58	GO:0006597: spermine biosynthetic process	1.31E-03
59	GO:0006529: asparagine biosynthetic process	1.31E-03
60	GO:0009875: pollen-pistil interaction	1.31E-03
61	GO:2000123: positive regulation of stomatal complex development	1.31E-03
62	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.31E-03
63	GO:0070981: L-asparagine biosynthetic process	1.31E-03
64	GO:0032502: developmental process	1.61E-03
65	GO:0040008: regulation of growth	1.68E-03
66	GO:0010252: auxin homeostasis	1.89E-03
67	GO:0071705: nitrogen compound transport	2.16E-03
68	GO:0001578: microtubule bundle formation	2.16E-03
69	GO:0006760: folic acid-containing compound metabolic process	2.16E-03
70	GO:0006557: S-adenosylmethioninamine biosynthetic process	2.16E-03
71	GO:0090708: specification of plant organ axis polarity	2.16E-03
72	GO:0080117: secondary growth	2.16E-03
73	GO:0006000: fructose metabolic process	2.16E-03
74	GO:0090391: granum assembly	2.16E-03
75	GO:0010027: thylakoid membrane organization	2.38E-03
76	GO:0008380: RNA splicing	2.50E-03
77	GO:0009767: photosynthetic electron transport chain	2.60E-03
78	GO:0010020: chloroplast fission	2.94E-03
79	GO:0046739: transport of virus in multicellular host	3.14E-03
80	GO:2000904: regulation of starch metabolic process	3.14E-03
81	GO:0051289: protein homotetramerization	3.14E-03
82	GO:0043572: plastid fission	3.14E-03
83	GO:1902476: chloride transmembrane transport	3.14E-03
84	GO:0010071: root meristem specification	3.14E-03
85	GO:0010239: chloroplast mRNA processing	3.14E-03
86	GO:0044211: CTP salvage	3.14E-03
87	GO:0009800: cinnamic acid biosynthetic process	3.14E-03
88	GO:0033014: tetrapyrrole biosynthetic process	3.14E-03
89	GO:0010306: rhamnogalacturonan II biosynthetic process	3.14E-03
90	GO:0015696: ammonium transport	3.14E-03
91	GO:0080188: RNA-directed DNA methylation	3.30E-03
92	GO:0048481: plant ovule development	3.35E-03
93	GO:0006021: inositol biosynthetic process	4.23E-03
94	GO:0008295: spermidine biosynthetic process	4.23E-03
95	GO:0044206: UMP salvage	4.23E-03
96	GO:0006346: methylation-dependent chromatin silencing	4.23E-03
97	GO:1901141: regulation of lignin biosynthetic process	4.23E-03
98	GO:0006479: protein methylation	4.23E-03
99	GO:0048629: trichome patterning	4.23E-03
100	GO:0051322: anaphase	4.23E-03
101	GO:0071249: cellular response to nitrate	4.23E-03
102	GO:0072488: ammonium transmembrane transport	4.23E-03
103	GO:0030104: water homeostasis	4.23E-03
104	GO:0009904: chloroplast accumulation movement	5.44E-03
105	GO:0006544: glycine metabolic process	5.44E-03
106	GO:0048497: maintenance of floral organ identity	5.44E-03
107	GO:1902183: regulation of shoot apical meristem development	5.44E-03
108	GO:0016123: xanthophyll biosynthetic process	5.44E-03
109	GO:0010438: cellular response to sulfur starvation	5.44E-03
110	GO:0032876: negative regulation of DNA endoreduplication	5.44E-03
111	GO:0030308: negative regulation of cell growth	5.44E-03
112	GO:0010375: stomatal complex patterning	5.44E-03
113	GO:0080110: sporopollenin biosynthetic process	5.44E-03
114	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.94E-03
115	GO:0006559: L-phenylalanine catabolic process	6.74E-03
116	GO:0006206: pyrimidine nucleobase metabolic process	6.74E-03
117	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.74E-03
118	GO:0006563: L-serine metabolic process	6.74E-03
119	GO:0010405: arabinogalactan protein metabolic process	6.74E-03
120	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.74E-03
121	GO:0016554: cytidine to uridine editing	6.74E-03
122	GO:1902456: regulation of stomatal opening	6.74E-03
123	GO:0048831: regulation of shoot system development	6.74E-03
124	GO:0003006: developmental process involved in reproduction	6.74E-03
125	GO:0010315: auxin efflux	6.74E-03
126	GO:0009942: longitudinal axis specification	8.15E-03
127	GO:0048509: regulation of meristem development	8.15E-03
128	GO:0009903: chloroplast avoidance movement	8.15E-03
129	GO:0030488: tRNA methylation	8.15E-03
130	GO:1901259: chloroplast rRNA processing	8.15E-03
131	GO:2000037: regulation of stomatal complex patterning	8.15E-03
132	GO:2000067: regulation of root morphogenesis	8.15E-03
133	GO:0009955: adaxial/abaxial pattern specification	8.15E-03
134	GO:0071470: cellular response to osmotic stress	8.15E-03
135	GO:0009741: response to brassinosteroid	8.19E-03
136	GO:0009646: response to absence of light	8.81E-03
137	GO:0048825: cotyledon development	9.46E-03
138	GO:0009396: folic acid-containing compound biosynthetic process	9.66E-03
139	GO:0030307: positive regulation of cell growth	9.66E-03
140	GO:0010103: stomatal complex morphogenesis	9.66E-03
141	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	9.66E-03
142	GO:0007050: cell cycle arrest	9.66E-03
143	GO:0006821: chloride transport	9.66E-03
144	GO:0015937: coenzyme A biosynthetic process	9.66E-03
145	GO:0010583: response to cyclopentenone	1.08E-02
146	GO:0048766: root hair initiation	1.13E-02
147	GO:0055075: potassium ion homeostasis	1.13E-02
148	GO:0052543: callose deposition in cell wall	1.13E-02
149	GO:0010439: regulation of glucosinolate biosynthetic process	1.13E-02
150	GO:0001522: pseudouridine synthesis	1.13E-02
151	GO:0009642: response to light intensity	1.13E-02
152	GO:0009828: plant-type cell wall loosening	1.23E-02
153	GO:0010497: plasmodesmata-mediated intercellular transport	1.29E-02
154	GO:0006002: fructose 6-phosphate metabolic process	1.29E-02
155	GO:0007186: G-protein coupled receptor signaling pathway	1.29E-02
156	GO:0048507: meristem development	1.47E-02
157	GO:0006783: heme biosynthetic process	1.47E-02
158	GO:0000373: Group II intron splicing	1.47E-02
159	GO:0000902: cell morphogenesis	1.47E-02
160	GO:2000024: regulation of leaf development	1.47E-02
161	GO:0031425: chloroplast RNA processing	1.66E-02
162	GO:0009638: phototropism	1.66E-02
163	GO:0035999: tetrahydrofolate interconversion	1.66E-02
164	GO:0042761: very long-chain fatty acid biosynthetic process	1.66E-02
165	GO:2000280: regulation of root development	1.66E-02
166	GO:0006349: regulation of gene expression by genetic imprinting	1.66E-02
167	GO:1900865: chloroplast RNA modification	1.66E-02
168	GO:0048829: root cap development	1.85E-02
169	GO:0006949: syncytium formation	1.85E-02
170	GO:0031627: telomeric loop formation	1.85E-02
171	GO:0010048: vernalization response	1.85E-02
172	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.85E-02
173	GO:0030154: cell differentiation	1.96E-02
174	GO:0000160: phosphorelay signal transduction system	2.03E-02
175	GO:0015770: sucrose transport	2.05E-02
176	GO:0048229: gametophyte development	2.05E-02
177	GO:0010015: root morphogenesis	2.05E-02
178	GO:0009682: induced systemic resistance	2.05E-02
179	GO:0009058: biosynthetic process	2.06E-02
180	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.10E-02
181	GO:0006811: ion transport	2.13E-02
182	GO:0010582: floral meristem determinacy	2.26E-02
183	GO:0000266: mitochondrial fission	2.26E-02
184	GO:0008361: regulation of cell size	2.26E-02
185	GO:0006790: sulfur compound metabolic process	2.26E-02
186	GO:0015706: nitrate transport	2.26E-02
187	GO:0010102: lateral root morphogenesis	2.48E-02
188	GO:0009785: blue light signaling pathway	2.48E-02
189	GO:0009691: cytokinin biosynthetic process	2.48E-02
190	GO:0010075: regulation of meristem growth	2.48E-02
191	GO:0010588: cotyledon vascular tissue pattern formation	2.48E-02
192	GO:2000012: regulation of auxin polar transport	2.48E-02
193	GO:0009934: regulation of meristem structural organization	2.70E-02
194	GO:0048467: gynoecium development	2.70E-02
195	GO:0010143: cutin biosynthetic process	2.70E-02
196	GO:0010207: photosystem II assembly	2.70E-02
197	GO:0006541: glutamine metabolic process	2.70E-02
198	GO:0006839: mitochondrial transport	2.79E-02
199	GO:0090351: seedling development	2.93E-02
200	GO:0046854: phosphatidylinositol phosphorylation	2.93E-02
201	GO:0010167: response to nitrate	2.93E-02
202	GO:0009901: anther dehiscence	2.93E-02
203	GO:0007275: multicellular organism development	2.95E-02
204	GO:0006071: glycerol metabolic process	3.16E-02
205	GO:0006833: water transport	3.16E-02
206	GO:0006355: regulation of transcription, DNA-templated	3.18E-02
207	GO:0009739: response to gibberellin	3.32E-02
208	GO:0009944: polarity specification of adaxial/abaxial axis	3.41E-02
209	GO:0080147: root hair cell development	3.41E-02
210	GO:0009751: response to salicylic acid	3.48E-02
211	GO:0010073: meristem maintenance	3.65E-02
212	GO:0051302: regulation of cell division	3.65E-02
213	GO:0006418: tRNA aminoacylation for protein translation	3.65E-02
214	GO:0006874: cellular calcium ion homeostasis	3.65E-02
215	GO:0003333: amino acid transmembrane transport	3.91E-02
216	GO:0006306: DNA methylation	3.91E-02
217	GO:0009664: plant-type cell wall organization	3.96E-02
218	GO:0031348: negative regulation of defense response	4.17E-02
219	GO:0009793: embryo development ending in seed dormancy	4.19E-02
220	GO:0009736: cytokinin-activated signaling pathway	4.25E-02
221	GO:0009625: response to insect	4.43E-02
222	GO:0010082: regulation of root meristem growth	4.43E-02
223	GO:0071215: cellular response to abscisic acid stimulus	4.43E-02
224	GO:0042127: regulation of cell proliferation	4.70E-02
225	GO:0006284: base-excision repair	4.70E-02
226	GO:0010584: pollen exine formation	4.70E-02
227	GO:0009826: unidimensional cell growth	4.72E-02
228	GO:0070417: cellular response to cold	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0070009: serine-type aminopeptidase activity	0.00E+00
3	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
4	GO:0042834: peptidoglycan binding	0.00E+00
5	GO:0071633: dihydroceramidase activity	0.00E+00
6	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
7	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
8	GO:0003727: single-stranded RNA binding	4.97E-06
9	GO:0004519: endonuclease activity	8.29E-05
10	GO:0004071: aspartate-ammonia ligase activity	6.10E-04
11	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	6.10E-04
12	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	6.10E-04
13	GO:0052381: tRNA dimethylallyltransferase activity	6.10E-04
14	GO:0004830: tryptophan-tRNA ligase activity	6.10E-04
15	GO:0010347: L-galactose-1-phosphate phosphatase activity	6.10E-04
16	GO:0004016: adenylate cyclase activity	6.10E-04
17	GO:0004400: histidinol-phosphate transaminase activity	6.10E-04
18	GO:1905201: gibberellin transmembrane transporter activity	6.10E-04
19	GO:0004632: phosphopantothenate--cysteine ligase activity	6.10E-04
20	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	6.10E-04
21	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.10E-04
22	GO:0004156: dihydropteroate synthase activity	6.10E-04
23	GO:0016274: protein-arginine N-methyltransferase activity	6.10E-04
24	GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	6.10E-04
25	GO:0005290: L-histidine transmembrane transporter activity	6.10E-04
26	GO:0052833: inositol monophosphate 4-phosphatase activity	1.31E-03
27	GO:0000064: L-ornithine transmembrane transporter activity	1.31E-03
28	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.31E-03
29	GO:0009884: cytokinin receptor activity	1.31E-03
30	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.31E-03
31	GO:0102083: 7,8-dihydromonapterin aldolase activity	1.31E-03
32	GO:0052832: inositol monophosphate 3-phosphatase activity	1.31E-03
33	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.31E-03
34	GO:0008805: carbon-monoxide oxygenase activity	1.31E-03
35	GO:0008934: inositol monophosphate 1-phosphatase activity	1.31E-03
36	GO:0004150: dihydroneopterin aldolase activity	1.31E-03
37	GO:0009672: auxin:proton symporter activity	1.47E-03
38	GO:0003723: RNA binding	1.91E-03
39	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	2.16E-03
40	GO:0016805: dipeptidase activity	2.16E-03
41	GO:0005034: osmosensor activity	2.16E-03
42	GO:0004014: adenosylmethionine decarboxylase activity	2.16E-03
43	GO:0052722: fatty acid in-chain hydroxylase activity	2.16E-03
44	GO:0017150: tRNA dihydrouridine synthase activity	2.16E-03
45	GO:0045548: phenylalanine ammonia-lyase activity	2.16E-03
46	GO:0010329: auxin efflux transmembrane transporter activity	2.60E-03
47	GO:0009982: pseudouridine synthase activity	2.60E-03
48	GO:0015181: arginine transmembrane transporter activity	3.14E-03
49	GO:0001872: (1->3)-beta-D-glucan binding	3.14E-03
50	GO:0015189: L-lysine transmembrane transporter activity	3.14E-03
51	GO:0005253: anion channel activity	4.23E-03
52	GO:0043495: protein anchor	4.23E-03
53	GO:0004930: G-protein coupled receptor activity	4.23E-03
54	GO:0046556: alpha-L-arabinofuranosidase activity	4.23E-03
55	GO:0016279: protein-lysine N-methyltransferase activity	4.23E-03
56	GO:0004845: uracil phosphoribosyltransferase activity	4.23E-03
57	GO:0019843: rRNA binding	4.55E-03
58	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.44E-03
59	GO:0008725: DNA-3-methyladenine glycosylase activity	5.44E-03
60	GO:0004372: glycine hydroxymethyltransferase activity	5.44E-03
61	GO:0004523: RNA-DNA hybrid ribonuclease activity	5.44E-03
62	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	5.55E-03
63	GO:0030570: pectate lyase activity	5.94E-03
64	GO:0008519: ammonium transmembrane transporter activity	6.74E-03
65	GO:0005247: voltage-gated chloride channel activity	6.74E-03
66	GO:2001070: starch binding	6.74E-03
67	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.74E-03
68	GO:0043621: protein self-association	6.95E-03
69	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	7.91E-03
70	GO:0019900: kinase binding	8.15E-03
71	GO:0008195: phosphatidate phosphatase activity	8.15E-03
72	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	8.15E-03
73	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	8.15E-03
74	GO:0004849: uridine kinase activity	8.15E-03
75	GO:0001085: RNA polymerase II transcription factor binding	8.19E-03
76	GO:0004871: signal transducer activity	8.58E-03
77	GO:0019901: protein kinase binding	9.46E-03
78	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	9.54E-03
79	GO:0003690: double-stranded DNA binding	9.62E-03
80	GO:0003777: microtubule motor activity	1.05E-02
81	GO:0004518: nuclease activity	1.08E-02
82	GO:0004650: polygalacturonase activity	1.29E-02
83	GO:0008237: metallopeptidase activity	1.31E-02
84	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.47E-02
85	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.48E-02
86	GO:0004673: protein histidine kinase activity	1.85E-02
87	GO:0005215: transporter activity	2.02E-02
88	GO:0003691: double-stranded telomeric DNA binding	2.05E-02
89	GO:0008515: sucrose transmembrane transporter activity	2.05E-02
90	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.05E-02
91	GO:0016829: lyase activity	2.13E-02
92	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.23E-02
93	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.45E-02
94	GO:0004022: alcohol dehydrogenase (NAD) activity	2.48E-02
95	GO:0031072: heat shock protein binding	2.48E-02
96	GO:0000155: phosphorelay sensor kinase activity	2.48E-02
97	GO:0003725: double-stranded RNA binding	2.48E-02
98	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.70E-02
99	GO:0004970: ionotropic glutamate receptor activity	2.93E-02
100	GO:0051119: sugar transmembrane transporter activity	2.93E-02
101	GO:0005217: intracellular ligand-gated ion channel activity	2.93E-02
102	GO:0003677: DNA binding	3.02E-02
103	GO:0008017: microtubule binding	3.06E-02
104	GO:0043565: sequence-specific DNA binding	3.29E-02
105	GO:0043424: protein histidine kinase binding	3.65E-02
106	GO:0005345: purine nucleobase transmembrane transporter activity	3.65E-02
107	GO:0004176: ATP-dependent peptidase activity	3.91E-02
108	GO:0033612: receptor serine/threonine kinase binding	3.91E-02
109	GO:0008408: 3'-5' exonuclease activity	3.91E-02
110	GO:0004707: MAP kinase activity	3.91E-02
111	GO:0018024: histone-lysine N-methyltransferase activity	4.98E-02
112	GO:0004812: aminoacyl-tRNA ligase activity	4.98E-02