GO Enrichment Analysis of Co-expressed Genes with
AT3G04140
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2000469: negative regulation of peroxidase activity | 0.00E+00 |
| 2 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 3 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 4 | GO:2001294: malonyl-CoA catabolic process | 0.00E+00 |
| 5 | GO:0045176: apical protein localization | 0.00E+00 |
| 6 | GO:0090355: positive regulation of auxin metabolic process | 0.00E+00 |
| 7 | GO:0090697: post-embryonic plant organ morphogenesis | 0.00E+00 |
| 8 | GO:0090358: positive regulation of tryptophan metabolic process | 0.00E+00 |
| 9 | GO:0007155: cell adhesion | 5.04E-06 |
| 10 | GO:0006166: purine ribonucleoside salvage | 2.38E-05 |
| 11 | GO:0006168: adenine salvage | 2.38E-05 |
| 12 | GO:0044209: AMP salvage | 6.89E-05 |
| 13 | GO:1902334: fructose export from vacuole to cytoplasm | 2.51E-04 |
| 14 | GO:0010362: negative regulation of anion channel activity by blue light | 2.51E-04 |
| 15 | GO:0031426: polycistronic mRNA processing | 2.51E-04 |
| 16 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 4.10E-04 |
| 17 | GO:0010192: mucilage biosynthetic process | 4.80E-04 |
| 18 | GO:0009641: shade avoidance | 4.80E-04 |
| 19 | GO:0010155: regulation of proton transport | 5.53E-04 |
| 20 | GO:0010541: acropetal auxin transport | 5.53E-04 |
| 21 | GO:0010540: basipetal auxin transport | 8.08E-04 |
| 22 | GO:0010143: cutin biosynthetic process | 8.08E-04 |
| 23 | GO:0009405: pathogenesis | 8.99E-04 |
| 24 | GO:0010160: formation of animal organ boundary | 8.99E-04 |
| 25 | GO:0006753: nucleoside phosphate metabolic process | 8.99E-04 |
| 26 | GO:0042753: positive regulation of circadian rhythm | 1.00E-03 |
| 27 | GO:0010239: chloroplast mRNA processing | 1.28E-03 |
| 28 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 1.28E-03 |
| 29 | GO:0009963: positive regulation of flavonoid biosynthetic process | 1.28E-03 |
| 30 | GO:1990019: protein storage vacuole organization | 1.28E-03 |
| 31 | GO:0009647: skotomorphogenesis | 1.28E-03 |
| 32 | GO:0010587: miRNA catabolic process | 1.28E-03 |
| 33 | GO:0090308: regulation of methylation-dependent chromatin silencing | 1.28E-03 |
| 34 | GO:0048442: sepal development | 1.71E-03 |
| 35 | GO:0009649: entrainment of circadian clock | 1.71E-03 |
| 36 | GO:0008295: spermidine biosynthetic process | 1.71E-03 |
| 37 | GO:0032366: intracellular sterol transport | 1.71E-03 |
| 38 | GO:0006021: inositol biosynthetic process | 1.71E-03 |
| 39 | GO:0048443: stamen development | 1.73E-03 |
| 40 | GO:1902183: regulation of shoot apical meristem development | 2.19E-03 |
| 41 | GO:0006665: sphingolipid metabolic process | 2.19E-03 |
| 42 | GO:0010158: abaxial cell fate specification | 2.19E-03 |
| 43 | GO:0034052: positive regulation of plant-type hypersensitive response | 2.19E-03 |
| 44 | GO:0046283: anthocyanin-containing compound metabolic process | 2.19E-03 |
| 45 | GO:0009904: chloroplast accumulation movement | 2.19E-03 |
| 46 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.19E-03 |
| 47 | GO:0048827: phyllome development | 2.70E-03 |
| 48 | GO:0010315: auxin efflux | 2.70E-03 |
| 49 | GO:0000741: karyogamy | 2.70E-03 |
| 50 | GO:0046855: inositol phosphate dephosphorylation | 2.70E-03 |
| 51 | GO:0060918: auxin transport | 2.70E-03 |
| 52 | GO:0009416: response to light stimulus | 3.00E-03 |
| 53 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 3.24E-03 |
| 54 | GO:0009648: photoperiodism | 3.24E-03 |
| 55 | GO:0009639: response to red or far red light | 3.24E-03 |
| 56 | GO:0010076: maintenance of floral meristem identity | 3.24E-03 |
| 57 | GO:0048280: vesicle fusion with Golgi apparatus | 3.24E-03 |
| 58 | GO:0009903: chloroplast avoidance movement | 3.24E-03 |
| 59 | GO:0009088: threonine biosynthetic process | 3.24E-03 |
| 60 | GO:0010196: nonphotochemical quenching | 3.82E-03 |
| 61 | GO:0015937: coenzyme A biosynthetic process | 3.82E-03 |
| 62 | GO:0000122: negative regulation of transcription from RNA polymerase II promoter | 3.82E-03 |
| 63 | GO:0030307: positive regulation of cell growth | 3.82E-03 |
| 64 | GO:0043068: positive regulation of programmed cell death | 4.44E-03 |
| 65 | GO:0006629: lipid metabolic process | 4.76E-03 |
| 66 | GO:0006997: nucleus organization | 5.08E-03 |
| 67 | GO:0006811: ion transport | 5.56E-03 |
| 68 | GO:0048507: meristem development | 5.75E-03 |
| 69 | GO:2000024: regulation of leaf development | 5.75E-03 |
| 70 | GO:0048527: lateral root development | 5.83E-03 |
| 71 | GO:0010119: regulation of stomatal movement | 5.83E-03 |
| 72 | GO:0009637: response to blue light | 6.39E-03 |
| 73 | GO:0009638: phototropism | 6.46E-03 |
| 74 | GO:0010018: far-red light signaling pathway | 6.46E-03 |
| 75 | GO:0006896: Golgi to vacuole transport | 7.20E-03 |
| 76 | GO:0006995: cellular response to nitrogen starvation | 7.20E-03 |
| 77 | GO:0048441: petal development | 7.20E-03 |
| 78 | GO:0043069: negative regulation of programmed cell death | 7.20E-03 |
| 79 | GO:0010216: maintenance of DNA methylation | 7.96E-03 |
| 80 | GO:0000038: very long-chain fatty acid metabolic process | 7.96E-03 |
| 81 | GO:0009750: response to fructose | 7.96E-03 |
| 82 | GO:0009640: photomorphogenesis | 8.24E-03 |
| 83 | GO:0008361: regulation of cell size | 8.75E-03 |
| 84 | GO:0006790: sulfur compound metabolic process | 8.75E-03 |
| 85 | GO:0016024: CDP-diacylglycerol biosynthetic process | 8.75E-03 |
| 86 | GO:0009718: anthocyanin-containing compound biosynthetic process | 9.57E-03 |
| 87 | GO:0009767: photosynthetic electron transport chain | 9.57E-03 |
| 88 | GO:0009785: blue light signaling pathway | 9.57E-03 |
| 89 | GO:0030048: actin filament-based movement | 9.57E-03 |
| 90 | GO:0010229: inflorescence development | 9.57E-03 |
| 91 | GO:0048440: carpel development | 1.04E-02 |
| 92 | GO:0010223: secondary shoot formation | 1.04E-02 |
| 93 | GO:0009887: animal organ morphogenesis | 1.04E-02 |
| 94 | GO:0009585: red, far-red light phototransduction | 1.11E-02 |
| 95 | GO:0009825: multidimensional cell growth | 1.13E-02 |
| 96 | GO:0019853: L-ascorbic acid biosynthetic process | 1.13E-02 |
| 97 | GO:0046854: phosphatidylinositol phosphorylation | 1.13E-02 |
| 98 | GO:0000162: tryptophan biosynthetic process | 1.22E-02 |
| 99 | GO:0000027: ribosomal large subunit assembly | 1.31E-02 |
| 100 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.31E-02 |
| 101 | GO:0007017: microtubule-based process | 1.41E-02 |
| 102 | GO:0048511: rhythmic process | 1.50E-02 |
| 103 | GO:0019915: lipid storage | 1.50E-02 |
| 104 | GO:0051260: protein homooligomerization | 1.50E-02 |
| 105 | GO:0019748: secondary metabolic process | 1.60E-02 |
| 106 | GO:0035428: hexose transmembrane transport | 1.60E-02 |
| 107 | GO:0009814: defense response, incompatible interaction | 1.60E-02 |
| 108 | GO:0009294: DNA mediated transformation | 1.71E-02 |
| 109 | GO:0071369: cellular response to ethylene stimulus | 1.71E-02 |
| 110 | GO:0019722: calcium-mediated signaling | 1.81E-02 |
| 111 | GO:0042147: retrograde transport, endosome to Golgi | 1.92E-02 |
| 112 | GO:0009741: response to brassinosteroid | 2.14E-02 |
| 113 | GO:0045489: pectin biosynthetic process | 2.14E-02 |
| 114 | GO:0010154: fruit development | 2.14E-02 |
| 115 | GO:0009958: positive gravitropism | 2.14E-02 |
| 116 | GO:0006520: cellular amino acid metabolic process | 2.14E-02 |
| 117 | GO:0010197: polar nucleus fusion | 2.14E-02 |
| 118 | GO:0046323: glucose import | 2.14E-02 |
| 119 | GO:0009646: response to absence of light | 2.25E-02 |
| 120 | GO:0007018: microtubule-based movement | 2.25E-02 |
| 121 | GO:0006623: protein targeting to vacuole | 2.36E-02 |
| 122 | GO:0009791: post-embryonic development | 2.36E-02 |
| 123 | GO:0048825: cotyledon development | 2.36E-02 |
| 124 | GO:0009749: response to glucose | 2.36E-02 |
| 125 | GO:0009851: auxin biosynthetic process | 2.36E-02 |
| 126 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 2.48E-02 |
| 127 | GO:0071554: cell wall organization or biogenesis | 2.48E-02 |
| 128 | GO:0006891: intra-Golgi vesicle-mediated transport | 2.48E-02 |
| 129 | GO:0007264: small GTPase mediated signal transduction | 2.60E-02 |
| 130 | GO:0010583: response to cyclopentenone | 2.60E-02 |
| 131 | GO:0016567: protein ubiquitination | 2.65E-02 |
| 132 | GO:0016125: sterol metabolic process | 2.85E-02 |
| 133 | GO:0010252: auxin homeostasis | 2.85E-02 |
| 134 | GO:0007267: cell-cell signaling | 2.97E-02 |
| 135 | GO:0009911: positive regulation of flower development | 3.23E-02 |
| 136 | GO:0015995: chlorophyll biosynthetic process | 3.62E-02 |
| 137 | GO:0006888: ER to Golgi vesicle-mediated transport | 3.62E-02 |
| 138 | GO:0048573: photoperiodism, flowering | 3.62E-02 |
| 139 | GO:0016311: dephosphorylation | 3.76E-02 |
| 140 | GO:0030244: cellulose biosynthetic process | 3.90E-02 |
| 141 | GO:0018298: protein-chromophore linkage | 3.90E-02 |
| 142 | GO:0000160: phosphorelay signal transduction system | 4.04E-02 |
| 143 | GO:0009826: unidimensional cell growth | 4.09E-02 |
| 144 | GO:0009834: plant-type secondary cell wall biogenesis | 4.18E-02 |
| 145 | GO:0010218: response to far red light | 4.18E-02 |
| 146 | GO:0007568: aging | 4.32E-02 |
| 147 | GO:0045893: positive regulation of transcription, DNA-templated | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity | 0.00E+00 |
| 2 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 3 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 4 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 5 | GO:0003999: adenine phosphoribosyltransferase activity | 2.38E-05 |
| 6 | GO:0000293: ferric-chelate reductase activity | 1.01E-04 |
| 7 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.51E-04 |
| 8 | GO:0047259: glucomannan 4-beta-mannosyltransferase activity | 2.51E-04 |
| 9 | GO:0080132: fatty acid alpha-hydroxylase activity | 2.51E-04 |
| 10 | GO:0004795: threonine synthase activity | 2.51E-04 |
| 11 | GO:0010945: CoA pyrophosphatase activity | 2.51E-04 |
| 12 | GO:0019210: kinase inhibitor activity | 2.51E-04 |
| 13 | GO:0004328: formamidase activity | 2.51E-04 |
| 14 | GO:0004766: spermidine synthase activity | 5.53E-04 |
| 15 | GO:0052832: inositol monophosphate 3-phosphatase activity | 5.53E-04 |
| 16 | GO:0008934: inositol monophosphate 1-phosphatase activity | 5.53E-04 |
| 17 | GO:0052833: inositol monophosphate 4-phosphatase activity | 5.53E-04 |
| 18 | GO:0015929: hexosaminidase activity | 5.53E-04 |
| 19 | GO:0004563: beta-N-acetylhexosaminidase activity | 5.53E-04 |
| 20 | GO:0048531: beta-1,3-galactosyltransferase activity | 5.53E-04 |
| 21 | GO:0005353: fructose transmembrane transporter activity | 5.53E-04 |
| 22 | GO:0080045: quercetin 3'-O-glucosyltransferase activity | 5.53E-04 |
| 23 | GO:0050734: hydroxycinnamoyltransferase activity | 8.99E-04 |
| 24 | GO:0003913: DNA photolyase activity | 8.99E-04 |
| 25 | GO:0090729: toxin activity | 8.99E-04 |
| 26 | GO:0048027: mRNA 5'-UTR binding | 1.28E-03 |
| 27 | GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | 1.28E-03 |
| 28 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.28E-03 |
| 29 | GO:0009882: blue light photoreceptor activity | 1.28E-03 |
| 30 | GO:0005355: glucose transmembrane transporter activity | 2.34E-03 |
| 31 | GO:0080046: quercetin 4'-O-glucosyltransferase activity | 2.70E-03 |
| 32 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.70E-03 |
| 33 | GO:0000210: NAD+ diphosphatase activity | 2.70E-03 |
| 34 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.70E-03 |
| 35 | GO:0016746: transferase activity, transferring acyl groups | 2.75E-03 |
| 36 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.24E-03 |
| 37 | GO:0009927: histidine phosphotransfer kinase activity | 3.24E-03 |
| 38 | GO:0051753: mannan synthase activity | 3.24E-03 |
| 39 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 3.82E-03 |
| 40 | GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity | 5.08E-03 |
| 41 | GO:0103095: wax ester synthase activity | 5.08E-03 |
| 42 | GO:0042802: identical protein binding | 7.20E-03 |
| 43 | GO:0047372: acylglycerol lipase activity | 7.96E-03 |
| 44 | GO:0008515: sucrose transmembrane transporter activity | 7.96E-03 |
| 45 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 8.75E-03 |
| 46 | GO:0000155: phosphorelay sensor kinase activity | 9.57E-03 |
| 47 | GO:0010329: auxin efflux transmembrane transporter activity | 9.57E-03 |
| 48 | GO:0008081: phosphoric diester hydrolase activity | 9.57E-03 |
| 49 | GO:0003774: motor activity | 1.04E-02 |
| 50 | GO:0008131: primary amine oxidase activity | 1.04E-02 |
| 51 | GO:0008146: sulfotransferase activity | 1.13E-02 |
| 52 | GO:0051119: sugar transmembrane transporter activity | 1.13E-02 |
| 53 | GO:0003777: microtubule motor activity | 1.23E-02 |
| 54 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.36E-02 |
| 55 | GO:0008408: 3'-5' exonuclease activity | 1.50E-02 |
| 56 | GO:0022857: transmembrane transporter activity | 1.50E-02 |
| 57 | GO:0004871: signal transducer activity | 1.62E-02 |
| 58 | GO:0016491: oxidoreductase activity | 1.65E-02 |
| 59 | GO:0030570: pectate lyase activity | 1.71E-02 |
| 60 | GO:0004527: exonuclease activity | 2.14E-02 |
| 61 | GO:0010181: FMN binding | 2.25E-02 |
| 62 | GO:0019901: protein kinase binding | 2.36E-02 |
| 63 | GO:0016791: phosphatase activity | 2.85E-02 |
| 64 | GO:0008017: microtubule binding | 2.88E-02 |
| 65 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.97E-02 |
| 66 | GO:0016413: O-acetyltransferase activity | 3.10E-02 |
| 67 | GO:0005506: iron ion binding | 3.18E-02 |
| 68 | GO:0030247: polysaccharide binding | 3.62E-02 |
| 69 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 4.18E-02 |
| 70 | GO:0030145: manganese ion binding | 4.32E-02 |
| 71 | GO:0003993: acid phosphatase activity | 4.76E-02 |
| 72 | GO:0000149: SNARE binding | 4.90E-02 |