Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G03820

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042794: rRNA transcription from plastid promoter0.00E+00
2GO:0045014: negative regulation of transcription by glucose0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0090627: plant epidermal cell differentiation0.00E+00
5GO:0009606: tropism0.00E+00
6GO:0090322: regulation of superoxide metabolic process0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0035884: arabinan biosynthetic process0.00E+00
9GO:0080127: fruit septum development0.00E+00
10GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
11GO:0097164: ammonium ion metabolic process0.00E+00
12GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0045184: establishment of protein localization0.00E+00
14GO:0090615: mitochondrial mRNA processing0.00E+00
15GO:0031222: arabinan catabolic process0.00E+00
16GO:0046620: regulation of organ growth3.38E-10
17GO:0042793: transcription from plastid promoter2.27E-09
18GO:0009734: auxin-activated signaling pathway2.30E-07
19GO:0009733: response to auxin4.26E-06
20GO:0010569: regulation of double-strand break repair via homologous recombination2.75E-05
21GO:0009658: chloroplast organization3.42E-05
22GO:0009451: RNA modification5.06E-05
23GO:0009926: auxin polar transport7.25E-05
24GO:0006518: peptide metabolic process8.78E-05
25GO:0009416: response to light stimulus1.15E-04
26GO:1900865: chloroplast RNA modification2.04E-04
27GO:2000038: regulation of stomatal complex development3.01E-04
28GO:0009913: epidermal cell differentiation6.21E-04
29GO:0034757: negative regulation of iron ion transport8.10E-04
30GO:0042659: regulation of cell fate specification8.10E-04
31GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process8.10E-04
32GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic8.10E-04
33GO:1905039: carboxylic acid transmembrane transport8.10E-04
34GO:1905200: gibberellic acid transmembrane transport8.10E-04
35GO:0080112: seed growth8.10E-04
36GO:0090558: plant epidermis development8.10E-04
37GO:0010063: positive regulation of trichoblast fate specification8.10E-04
38GO:0010480: microsporocyte differentiation8.10E-04
39GO:1903866: palisade mesophyll development8.10E-04
40GO:0035987: endodermal cell differentiation8.10E-04
41GO:0006436: tryptophanyl-tRNA aminoacylation8.10E-04
42GO:0000066: mitochondrial ornithine transport8.10E-04
43GO:0015904: tetracycline transport8.10E-04
44GO:0040008: regulation of growth9.41E-04
45GO:0048437: floral organ development1.04E-03
46GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.21E-03
47GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.30E-03
48GO:0042255: ribosome assembly1.30E-03
49GO:0006353: DNA-templated transcription, termination1.30E-03
50GO:0000105: histidine biosynthetic process1.30E-03
51GO:0009657: plastid organization1.59E-03
52GO:0007389: pattern specification process1.59E-03
53GO:2000123: positive regulation of stomatal complex development1.75E-03
54GO:1902326: positive regulation of chlorophyll biosynthetic process1.75E-03
55GO:0070981: L-asparagine biosynthetic process1.75E-03
56GO:0010271: regulation of chlorophyll catabolic process1.75E-03
57GO:0018026: peptidyl-lysine monomethylation1.75E-03
58GO:2000039: regulation of trichome morphogenesis1.75E-03
59GO:0071497: cellular response to freezing1.75E-03
60GO:0009662: etioplast organization1.75E-03
61GO:1900033: negative regulation of trichome patterning1.75E-03
62GO:1904143: positive regulation of carotenoid biosynthetic process1.75E-03
63GO:0080009: mRNA methylation1.75E-03
64GO:0006529: asparagine biosynthetic process1.75E-03
65GO:0000902: cell morphogenesis1.91E-03
66GO:0031425: chloroplast RNA processing2.26E-03
67GO:0006535: cysteine biosynthetic process from serine2.65E-03
68GO:0048829: root cap development2.65E-03
69GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.90E-03
70GO:0090708: specification of plant organ axis polarity2.90E-03
71GO:0080117: secondary growth2.90E-03
72GO:0090391: granum assembly2.90E-03
73GO:0042780: tRNA 3'-end processing2.90E-03
74GO:0001578: microtubule bundle formation2.90E-03
75GO:0010252: auxin homeostasis3.29E-03
76GO:0010588: cotyledon vascular tissue pattern formation4.01E-03
77GO:0010027: thylakoid membrane organization4.14E-03
78GO:0051513: regulation of monopolar cell growth4.23E-03
79GO:0010239: chloroplast mRNA processing4.23E-03
80GO:0009800: cinnamic acid biosynthetic process4.23E-03
81GO:0044211: CTP salvage4.23E-03
82GO:0010306: rhamnogalacturonan II biosynthetic process4.23E-03
83GO:0046739: transport of virus in multicellular host4.23E-03
84GO:2000904: regulation of starch metabolic process4.23E-03
85GO:0051289: protein homotetramerization4.23E-03
86GO:0043572: plastid fission4.23E-03
87GO:0016556: mRNA modification4.23E-03
88GO:0010371: regulation of gibberellin biosynthetic process4.23E-03
89GO:1902476: chloride transmembrane transport4.23E-03
90GO:0010071: root meristem specification4.23E-03
91GO:0010020: chloroplast fission4.53E-03
92GO:0080188: RNA-directed DNA methylation5.09E-03
93GO:1900864: mitochondrial RNA modification5.72E-03
94GO:0051322: anaphase5.72E-03
95GO:0030104: water homeostasis5.72E-03
96GO:0006221: pyrimidine nucleotide biosynthetic process5.72E-03
97GO:0046656: folic acid biosynthetic process5.72E-03
98GO:0006021: inositol biosynthetic process5.72E-03
99GO:0044206: UMP salvage5.72E-03
100GO:0006346: methylation-dependent chromatin silencing5.72E-03
101GO:1901141: regulation of lignin biosynthetic process5.72E-03
102GO:0006479: protein methylation5.72E-03
103GO:0048629: trichome patterning5.72E-03
104GO:0048481: plant ovule development5.83E-03
105GO:0019344: cysteine biosynthetic process6.31E-03
106GO:0016123: xanthophyll biosynthetic process7.36E-03
107GO:0032876: negative regulation of DNA endoreduplication7.36E-03
108GO:0080110: sporopollenin biosynthetic process7.36E-03
109GO:0030308: negative regulation of cell growth7.36E-03
110GO:0010375: stomatal complex patterning7.36E-03
111GO:0009904: chloroplast accumulation movement7.36E-03
112GO:0048497: maintenance of floral organ identity7.36E-03
113GO:0009107: lipoate biosynthetic process7.36E-03
114GO:0003333: amino acid transmembrane transport7.68E-03
115GO:0016998: cell wall macromolecule catabolic process7.68E-03
116GO:0009959: negative gravitropism9.16E-03
117GO:0006655: phosphatidylglycerol biosynthetic process9.16E-03
118GO:0016554: cytidine to uridine editing9.16E-03
119GO:1902456: regulation of stomatal opening9.16E-03
120GO:0048831: regulation of shoot system development9.16E-03
121GO:0003006: developmental process involved in reproduction9.16E-03
122GO:0010315: auxin efflux9.16E-03
123GO:0006559: L-phenylalanine catabolic process9.16E-03
124GO:0006206: pyrimidine nucleobase metabolic process9.16E-03
125GO:0009643: photosynthetic acclimation9.16E-03
126GO:0018258: protein O-linked glycosylation via hydroxyproline9.16E-03
127GO:0010405: arabinogalactan protein metabolic process9.16E-03
128GO:0010304: PSII associated light-harvesting complex II catabolic process9.16E-03
129GO:0010082: regulation of root meristem growth9.21E-03
130GO:2000037: regulation of stomatal complex patterning1.11E-02
131GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.11E-02
132GO:0010310: regulation of hydrogen peroxide metabolic process1.11E-02
133GO:2000067: regulation of root morphogenesis1.11E-02
134GO:0009955: adaxial/abaxial pattern specification1.11E-02
135GO:0071470: cellular response to osmotic stress1.11E-02
136GO:0009942: longitudinal axis specification1.11E-02
137GO:0048509: regulation of meristem development1.11E-02
138GO:0046654: tetrahydrofolate biosynthetic process1.11E-02
139GO:0009903: chloroplast avoidance movement1.11E-02
140GO:0030488: tRNA methylation1.11E-02
141GO:1901259: chloroplast rRNA processing1.11E-02
142GO:0010087: phloem or xylem histogenesis1.18E-02
143GO:0010305: leaf vascular tissue pattern formation1.27E-02
144GO:0009741: response to brassinosteroid1.27E-02
145GO:0006955: immune response1.32E-02
146GO:0007050: cell cycle arrest1.32E-02
147GO:0006821: chloride transport1.32E-02
148GO:0015937: coenzyme A biosynthetic process1.32E-02
149GO:0009396: folic acid-containing compound biosynthetic process1.32E-02
150GO:0030307: positive regulation of cell growth1.32E-02
151GO:0010103: stomatal complex morphogenesis1.32E-02
152GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.32E-02
153GO:0009646: response to absence of light1.37E-02
154GO:0006357: regulation of transcription from RNA polymerase II promoter1.41E-02
155GO:0048825: cotyledon development1.47E-02
156GO:0001522: pseudouridine synthesis1.54E-02
157GO:0009642: response to light intensity1.54E-02
158GO:0048766: root hair initiation1.54E-02
159GO:0055075: potassium ion homeostasis1.54E-02
160GO:0052543: callose deposition in cell wall1.54E-02
161GO:0080156: mitochondrial mRNA modification1.58E-02
162GO:0071554: cell wall organization or biogenesis1.58E-02
163GO:0010583: response to cyclopentenone1.69E-02
164GO:0032502: developmental process1.69E-02
165GO:0009739: response to gibberellin1.71E-02
166GO:0019430: removal of superoxide radicals1.77E-02
167GO:0007186: G-protein coupled receptor signaling pathway1.77E-02
168GO:0010497: plasmodesmata-mediated intercellular transport1.77E-02
169GO:0032544: plastid translation1.77E-02
170GO:0009828: plant-type cell wall loosening1.92E-02
171GO:0005975: carbohydrate metabolic process2.01E-02
172GO:0048507: meristem development2.01E-02
173GO:0000373: Group II intron splicing2.01E-02
174GO:0048589: developmental growth2.01E-02
175GO:0048367: shoot system development2.07E-02
176GO:0009638: phototropism2.27E-02
177GO:0042761: very long-chain fatty acid biosynthetic process2.27E-02
178GO:2000280: regulation of root development2.27E-02
179GO:0006349: regulation of gene expression by genetic imprinting2.27E-02
180GO:0006949: syncytium formation2.53E-02
181GO:0006259: DNA metabolic process2.53E-02
182GO:0031627: telomeric loop formation2.53E-02
183GO:0010048: vernalization response2.53E-02
184GO:0045036: protein targeting to chloroplast2.53E-02
185GO:0016567: protein ubiquitination2.67E-02
186GO:0010411: xyloglucan metabolic process2.70E-02
187GO:0010015: root morphogenesis2.81E-02
188GO:0006265: DNA topological change2.81E-02
189GO:0015770: sucrose transport2.81E-02
190GO:0009750: response to fructose2.81E-02
191GO:0048229: gametophyte development2.81E-02
192GO:0008361: regulation of cell size3.09E-02
193GO:0006790: sulfur compound metabolic process3.09E-02
194GO:0010152: pollen maturation3.09E-02
195GO:0016024: CDP-diacylglycerol biosynthetic process3.09E-02
196GO:0045037: protein import into chloroplast stroma3.09E-02
197GO:0010582: floral meristem determinacy3.09E-02
198GO:0000160: phosphorelay signal transduction system3.14E-02
199GO:0006811: ion transport3.30E-02
200GO:0009767: photosynthetic electron transport chain3.39E-02
201GO:0030048: actin filament-based movement3.39E-02
202GO:2000012: regulation of auxin polar transport3.39E-02
203GO:0010102: lateral root morphogenesis3.39E-02
204GO:0009785: blue light signaling pathway3.39E-02
205GO:0009691: cytokinin biosynthetic process3.39E-02
206GO:0010075: regulation of meristem growth3.39E-02
207GO:0009058: biosynthetic process3.56E-02
208GO:0006865: amino acid transport3.62E-02
209GO:0048467: gynoecium development3.69E-02
210GO:0010207: photosystem II assembly3.69E-02
211GO:0006541: glutamine metabolic process3.69E-02
212GO:0009934: regulation of meristem structural organization3.69E-02
213GO:0007275: multicellular organism development3.70E-02
214GO:0034599: cellular response to oxidative stress3.96E-02
215GO:0009901: anther dehiscence4.00E-02
216GO:0090351: seedling development4.00E-02
217GO:0046854: phosphatidylinositol phosphorylation4.00E-02
218GO:0009790: embryo development4.03E-02
219GO:0030001: metal ion transport4.32E-02
220GO:0006839: mitochondrial transport4.32E-02
221GO:0006071: glycerol metabolic process4.33E-02
222GO:0006833: water transport4.33E-02
223GO:0080147: root hair cell development4.66E-02
224GO:0000027: ribosomal large subunit assembly4.66E-02
225GO:0051302: regulation of cell division4.99E-02
226GO:0006418: tRNA aminoacylation for protein translation4.99E-02
227GO:0006874: cellular calcium ion homeostasis4.99E-02
228GO:0010073: meristem maintenance4.99E-02
229GO:0006825: copper ion transport4.99E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0052834: inositol monophosphate phosphatase activity0.00E+00
3GO:0071633: dihydroceramidase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0004401: histidinol-phosphatase activity0.00E+00
6GO:0004519: endonuclease activity1.60E-05
7GO:0004930: G-protein coupled receptor activity3.01E-04
8GO:0004016: adenylate cyclase activity8.10E-04
9GO:0004400: histidinol-phosphate transaminase activity8.10E-04
10GO:1905201: gibberellin transmembrane transporter activity8.10E-04
11GO:0004632: phosphopantothenate--cysteine ligase activity8.10E-04
12GO:0042834: peptidoglycan binding8.10E-04
13GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity8.10E-04
14GO:0016274: protein-arginine N-methyltransferase activity8.10E-04
15GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity8.10E-04
16GO:0004156: dihydropteroate synthase activity8.10E-04
17GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity8.10E-04
18GO:0005290: L-histidine transmembrane transporter activity8.10E-04
19GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity8.10E-04
20GO:0004071: aspartate-ammonia ligase activity8.10E-04
21GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity8.10E-04
22GO:0004830: tryptophan-tRNA ligase activity8.10E-04
23GO:0052381: tRNA dimethylallyltransferase activity8.10E-04
24GO:0010347: L-galactose-1-phosphate phosphatase activity8.10E-04
25GO:0004124: cysteine synthase activity8.20E-04
26GO:0004222: metalloendopeptidase activity1.25E-03
27GO:0003723: RNA binding1.44E-03
28GO:0003727: single-stranded RNA binding1.45E-03
29GO:0016415: octanoyltransferase activity1.75E-03
30GO:0052832: inositol monophosphate 3-phosphatase activity1.75E-03
31GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.75E-03
32GO:0008805: carbon-monoxide oxygenase activity1.75E-03
33GO:0008934: inositol monophosphate 1-phosphatase activity1.75E-03
34GO:0008493: tetracycline transporter activity1.75E-03
35GO:0052833: inositol monophosphate 4-phosphatase activity1.75E-03
36GO:0000064: L-ornithine transmembrane transporter activity1.75E-03
37GO:0015929: hexosaminidase activity1.75E-03
38GO:0004563: beta-N-acetylhexosaminidase activity1.75E-03
39GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.75E-03
40GO:0009884: cytokinin receptor activity1.75E-03
41GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.75E-03
42GO:0017118: lipoyltransferase activity1.75E-03
43GO:0019843: rRNA binding2.22E-03
44GO:0009672: auxin:proton symporter activity2.26E-03
45GO:0017150: tRNA dihydrouridine synthase activity2.90E-03
46GO:0045548: phenylalanine ammonia-lyase activity2.90E-03
47GO:0042781: 3'-tRNA processing endoribonuclease activity2.90E-03
48GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity2.90E-03
49GO:0016805: dipeptidase activity2.90E-03
50GO:0005034: osmosensor activity2.90E-03
51GO:0009982: pseudouridine synthase activity4.01E-03
52GO:0003725: double-stranded RNA binding4.01E-03
53GO:0010329: auxin efflux transmembrane transporter activity4.01E-03
54GO:0001872: (1->3)-beta-D-glucan binding4.23E-03
55GO:0015189: L-lysine transmembrane transporter activity4.23E-03
56GO:0009041: uridylate kinase activity4.23E-03
57GO:0015181: arginine transmembrane transporter activity4.23E-03
58GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.53E-03
59GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting5.42E-03
60GO:0004650: polygalacturonase activity5.45E-03
61GO:0004845: uracil phosphoribosyltransferase activity5.72E-03
62GO:0010011: auxin binding5.72E-03
63GO:0010328: auxin influx transmembrane transporter activity5.72E-03
64GO:0005253: anion channel activity5.72E-03
65GO:0046556: alpha-L-arabinofuranosidase activity5.72E-03
66GO:0016279: protein-lysine N-methyltransferase activity5.72E-03
67GO:0004871: signal transducer activity5.94E-03
68GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds6.45E-03
69GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding6.70E-03
70GO:0008725: DNA-3-methyladenine glycosylase activity7.36E-03
71GO:0004523: RNA-DNA hybrid ribonuclease activity7.36E-03
72GO:0004888: transmembrane signaling receptor activity7.36E-03
73GO:0016773: phosphotransferase activity, alcohol group as acceptor7.36E-03
74GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.36E-03
75GO:0004605: phosphatidate cytidylyltransferase activity9.16E-03
76GO:1990714: hydroxyproline O-galactosyltransferase activity9.16E-03
77GO:0004784: superoxide dismutase activity9.16E-03
78GO:0005247: voltage-gated chloride channel activity9.16E-03
79GO:0030570: pectate lyase activity9.21E-03
80GO:0008195: phosphatidate phosphatase activity1.11E-02
81GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.11E-02
82GO:0004849: uridine kinase activity1.11E-02
83GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.11E-02
84GO:0016832: aldehyde-lyase activity1.11E-02
85GO:0004656: procollagen-proline 4-dioxygenase activity1.11E-02
86GO:0019900: kinase binding1.11E-02
87GO:0043621: protein self-association1.21E-02
88GO:0019901: protein kinase binding1.47E-02
89GO:0016762: xyloglucan:xyloglucosyl transferase activity1.58E-02
90GO:0004518: nuclease activity1.69E-02
91GO:0008173: RNA methyltransferase activity1.77E-02
92GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.77E-02
93GO:0003777: microtubule motor activity1.83E-02
94GO:0008889: glycerophosphodiester phosphodiesterase activity2.01E-02
95GO:0008237: metallopeptidase activity2.04E-02
96GO:0016413: O-acetyltransferase activity2.16E-02
97GO:0005215: transporter activity2.18E-02
98GO:0005515: protein binding2.23E-02
99GO:0004673: protein histidine kinase activity2.53E-02
100GO:0016798: hydrolase activity, acting on glycosyl bonds2.70E-02
101GO:0003691: double-stranded telomeric DNA binding2.81E-02
102GO:0008515: sucrose transmembrane transporter activity2.81E-02
103GO:0004022: alcohol dehydrogenase (NAD) activity3.39E-02
104GO:0031072: heat shock protein binding3.39E-02
105GO:0000155: phosphorelay sensor kinase activity3.39E-02
106GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.46E-02
107GO:0016829: lyase activity3.67E-02
108GO:0003774: motor activity3.69E-02
109GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.79E-02
110GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.91E-02
111GO:0004970: ionotropic glutamate receptor activity4.00E-02
112GO:0051119: sugar transmembrane transporter activity4.00E-02
113GO:0005217: intracellular ligand-gated ion channel activity4.00E-02
114GO:0031418: L-ascorbic acid binding4.66E-02
115GO:0003677: DNA binding4.78E-02
116GO:0043424: protein histidine kinase binding4.99E-02
117GO:0005345: purine nucleobase transmembrane transporter activity4.99E-02
<
Gene type



Gene DE type