Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G03630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080127: fruit septum development0.00E+00
2GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
3GO:0045184: establishment of protein localization0.00E+00
4GO:0019988: charged-tRNA amino acid modification0.00E+00
5GO:0090615: mitochondrial mRNA processing0.00E+00
6GO:0000492: box C/D snoRNP assembly0.00E+00
7GO:0042794: rRNA transcription from plastid promoter0.00E+00
8GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
9GO:0045014: negative regulation of transcription by glucose0.00E+00
10GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
11GO:0090627: plant epidermal cell differentiation0.00E+00
12GO:0009606: tropism0.00E+00
13GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
14GO:0000372: Group I intron splicing0.00E+00
15GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
16GO:1903224: regulation of endodermal cell differentiation0.00E+00
17GO:0042793: transcription from plastid promoter1.37E-07
18GO:0009658: chloroplast organization8.25E-06
19GO:0010569: regulation of double-strand break repair via homologous recombination1.71E-05
20GO:0006353: DNA-templated transcription, termination4.88E-05
21GO:0006518: peptide metabolic process5.65E-05
22GO:0000373: Group II intron splicing9.12E-05
23GO:0042127: regulation of cell proliferation9.63E-05
24GO:0010305: leaf vascular tissue pattern formation1.48E-04
25GO:1900864: mitochondrial RNA modification2.03E-04
26GO:2000038: regulation of stomatal complex development2.03E-04
27GO:0009734: auxin-activated signaling pathway2.19E-04
28GO:0010588: cotyledon vascular tissue pattern formation2.73E-04
29GO:0048497: maintenance of floral organ identity3.06E-04
30GO:0080188: RNA-directed DNA methylation3.77E-04
31GO:0009913: epidermal cell differentiation4.27E-04
32GO:0009733: response to auxin4.99E-04
33GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.19E-04
34GO:0090558: plant epidermis development6.31E-04
35GO:0010063: positive regulation of trichoblast fate specification6.31E-04
36GO:0090063: positive regulation of microtubule nucleation6.31E-04
37GO:1903866: palisade mesophyll development6.31E-04
38GO:0033206: meiotic cytokinesis6.31E-04
39GO:0035987: endodermal cell differentiation6.31E-04
40GO:0006436: tryptophanyl-tRNA aminoacylation6.31E-04
41GO:0010342: endosperm cellularization6.31E-04
42GO:0034757: negative regulation of iron ion transport6.31E-04
43GO:0048016: inositol phosphate-mediated signaling6.31E-04
44GO:0042659: regulation of cell fate specification6.31E-04
45GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.31E-04
46GO:1905039: carboxylic acid transmembrane transport6.31E-04
47GO:1905200: gibberellic acid transmembrane transport6.31E-04
48GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.31E-04
49GO:0080112: seed growth6.31E-04
50GO:0006401: RNA catabolic process7.25E-04
51GO:0006955: immune response7.25E-04
52GO:0042255: ribosome assembly9.01E-04
53GO:0008033: tRNA processing1.10E-03
54GO:0007389: pattern specification process1.10E-03
55GO:0009416: response to light stimulus1.33E-03
56GO:0010271: regulation of chlorophyll catabolic process1.36E-03
57GO:0010541: acropetal auxin transport1.36E-03
58GO:0018026: peptidyl-lysine monomethylation1.36E-03
59GO:0048731: system development1.36E-03
60GO:0009662: etioplast organization1.36E-03
61GO:1900033: negative regulation of trichome patterning1.36E-03
62GO:1904143: positive regulation of carotenoid biosynthetic process1.36E-03
63GO:2000071: regulation of defense response by callose deposition1.36E-03
64GO:0080009: mRNA methylation1.36E-03
65GO:2000123: positive regulation of stomatal complex development1.36E-03
66GO:1901529: positive regulation of anion channel activity1.36E-03
67GO:0033566: gamma-tubulin complex localization1.36E-03
68GO:0009967: positive regulation of signal transduction1.36E-03
69GO:1902326: positive regulation of chlorophyll biosynthetic process1.36E-03
70GO:1900865: chloroplast RNA modification1.55E-03
71GO:0080156: mitochondrial mRNA modification1.58E-03
72GO:0009793: embryo development ending in seed dormancy1.77E-03
73GO:0048829: root cap development1.81E-03
74GO:0040008: regulation of growth1.84E-03
75GO:0006364: rRNA processing2.03E-03
76GO:0046856: phosphatidylinositol dephosphorylation2.10E-03
77GO:0042780: tRNA 3'-end processing2.24E-03
78GO:0001578: microtubule bundle formation2.24E-03
79GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.24E-03
80GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.24E-03
81GO:0090708: specification of plant organ axis polarity2.24E-03
82GO:0080117: secondary growth2.24E-03
83GO:0044210: 'de novo' CTP biosynthetic process2.24E-03
84GO:0090391: granum assembly2.24E-03
85GO:0045037: protein import into chloroplast stroma2.41E-03
86GO:0048367: shoot system development2.75E-03
87GO:0010371: regulation of gibberellin biosynthetic process3.25E-03
88GO:1902476: chloride transmembrane transport3.25E-03
89GO:0010071: root meristem specification3.25E-03
90GO:0033169: histone H3-K9 demethylation3.25E-03
91GO:0009102: biotin biosynthetic process3.25E-03
92GO:0010239: chloroplast mRNA processing3.25E-03
93GO:0010306: rhamnogalacturonan II biosynthetic process3.25E-03
94GO:0007276: gamete generation3.25E-03
95GO:0043481: anthocyanin accumulation in tissues in response to UV light3.25E-03
96GO:0048481: plant ovule development3.57E-03
97GO:2000377: regulation of reactive oxygen species metabolic process4.30E-03
98GO:0006021: inositol biosynthetic process4.38E-03
99GO:0006808: regulation of nitrogen utilization4.38E-03
100GO:0006479: protein methylation4.38E-03
101GO:0048629: trichome patterning4.38E-03
102GO:0051322: anaphase4.38E-03
103GO:0030104: water homeostasis4.38E-03
104GO:0000914: phragmoplast assembly4.38E-03
105GO:0006221: pyrimidine nucleotide biosynthetic process4.38E-03
106GO:0003333: amino acid transmembrane transport5.22E-03
107GO:0016998: cell wall macromolecule catabolic process5.22E-03
108GO:0016120: carotene biosynthetic process5.63E-03
109GO:0016123: xanthophyll biosynthetic process5.63E-03
110GO:0032957: inositol trisphosphate metabolic process5.63E-03
111GO:0032876: negative regulation of DNA endoreduplication5.63E-03
112GO:0080110: sporopollenin biosynthetic process5.63E-03
113GO:0030308: negative regulation of cell growth5.63E-03
114GO:0010375: stomatal complex patterning5.63E-03
115GO:0030001: metal ion transport5.73E-03
116GO:2000022: regulation of jasmonic acid mediated signaling pathway5.73E-03
117GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.25E-03
118GO:0071215: cellular response to abscisic acid stimulus6.25E-03
119GO:0046855: inositol phosphate dephosphorylation6.99E-03
120GO:1902456: regulation of stomatal opening6.99E-03
121GO:0016554: cytidine to uridine editing6.99E-03
122GO:0048831: regulation of shoot system development6.99E-03
123GO:0003006: developmental process involved in reproduction6.99E-03
124GO:0010315: auxin efflux6.99E-03
125GO:0006355: regulation of transcription, DNA-templated7.62E-03
126GO:0010501: RNA secondary structure unwinding7.99E-03
127GO:0010087: phloem or xylem histogenesis7.99E-03
128GO:0010118: stomatal movement7.99E-03
129GO:0048509: regulation of meristem development8.45E-03
130GO:2000033: regulation of seed dormancy process8.45E-03
131GO:1901259: chloroplast rRNA processing8.45E-03
132GO:2000037: regulation of stomatal complex patterning8.45E-03
133GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity8.45E-03
134GO:2000067: regulation of root morphogenesis8.45E-03
135GO:0009955: adaxial/abaxial pattern specification8.45E-03
136GO:0010067: procambium histogenesis8.45E-03
137GO:0006351: transcription, DNA-templated8.47E-03
138GO:0009741: response to brassinosteroid8.62E-03
139GO:0006468: protein phosphorylation9.05E-03
140GO:0009736: cytokinin-activated signaling pathway9.83E-03
141GO:0048825: cotyledon development9.97E-03
142GO:0010444: guard mother cell differentiation1.00E-02
143GO:0000082: G1/S transition of mitotic cell cycle1.00E-02
144GO:0010103: stomatal complex morphogenesis1.00E-02
145GO:0010374: stomatal complex development1.00E-02
146GO:0006821: chloride transport1.00E-02
147GO:0048437: floral organ development1.00E-02
148GO:0032502: developmental process1.14E-02
149GO:0010583: response to cyclopentenone1.14E-02
150GO:0046620: regulation of organ growth1.17E-02
151GO:0048766: root hair initiation1.17E-02
152GO:0010492: maintenance of shoot apical meristem identity1.17E-02
153GO:0055075: potassium ion homeostasis1.17E-02
154GO:0000105: histidine biosynthetic process1.17E-02
155GO:0052543: callose deposition in cell wall1.17E-02
156GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.17E-02
157GO:0006402: mRNA catabolic process1.17E-02
158GO:0009787: regulation of abscisic acid-activated signaling pathway1.17E-02
159GO:0009642: response to light intensity1.17E-02
160GO:0048316: seed development1.27E-02
161GO:0009828: plant-type cell wall loosening1.30E-02
162GO:0010233: phloem transport1.34E-02
163GO:0010497: plasmodesmata-mediated intercellular transport1.34E-02
164GO:0048574: long-day photoperiodism, flowering1.34E-02
165GO:0032544: plastid translation1.34E-02
166GO:0006397: mRNA processing1.34E-02
167GO:0019430: removal of superoxide radicals1.34E-02
168GO:0009827: plant-type cell wall modification1.34E-02
169GO:0010052: guard cell differentiation1.34E-02
170GO:0000910: cytokinesis1.47E-02
171GO:0048507: meristem development1.53E-02
172GO:0048589: developmental growth1.53E-02
173GO:0000902: cell morphogenesis1.53E-02
174GO:0009245: lipid A biosynthetic process1.53E-02
175GO:0010027: thylakoid membrane organization1.55E-02
176GO:0010029: regulation of seed germination1.64E-02
177GO:0031425: chloroplast RNA processing1.72E-02
178GO:0042761: very long-chain fatty acid biosynthetic process1.72E-02
179GO:2000280: regulation of root development1.72E-02
180GO:0006349: regulation of gene expression by genetic imprinting1.72E-02
181GO:0045036: protein targeting to chloroplast1.92E-02
182GO:0016441: posttranscriptional gene silencing1.92E-02
183GO:0006949: syncytium formation1.92E-02
184GO:0010048: vernalization response1.92E-02
185GO:1903507: negative regulation of nucleic acid-templated transcription2.13E-02
186GO:0015770: sucrose transport2.13E-02
187GO:0009750: response to fructose2.13E-02
188GO:0048229: gametophyte development2.13E-02
189GO:0016485: protein processing2.13E-02
190GO:0048765: root hair cell differentiation2.13E-02
191GO:0009682: induced systemic resistance2.13E-02
192GO:0000160: phosphorelay signal transduction system2.14E-02
193GO:0009845: seed germination2.27E-02
194GO:0010582: floral meristem determinacy2.34E-02
195GO:0008361: regulation of cell size2.34E-02
196GO:0006790: sulfur compound metabolic process2.34E-02
197GO:0012501: programmed cell death2.34E-02
198GO:0010152: pollen maturation2.34E-02
199GO:0006865: amino acid transport2.46E-02
200GO:0009790: embryo development2.50E-02
201GO:0010102: lateral root morphogenesis2.57E-02
202GO:0009691: cytokinin biosynthetic process2.57E-02
203GO:0009867: jasmonic acid mediated signaling pathway2.58E-02
204GO:0010020: chloroplast fission2.80E-02
205GO:0006270: DNA replication initiation2.80E-02
206GO:0009887: animal organ morphogenesis2.80E-02
207GO:0010540: basipetal auxin transport2.80E-02
208GO:0048467: gynoecium development2.80E-02
209GO:0046854: phosphatidylinositol phosphorylation3.04E-02
210GO:0009901: anther dehiscence3.04E-02
211GO:0009451: RNA modification3.17E-02
212GO:0006636: unsaturated fatty acid biosynthetic process3.28E-02
213GO:0006833: water transport3.28E-02
214GO:0009744: response to sucrose3.33E-02
215GO:0009863: salicylic acid mediated signaling pathway3.53E-02
216GO:0010187: negative regulation of seed germination3.53E-02
217GO:0080147: root hair cell development3.53E-02
218GO:0009739: response to gibberellin3.54E-02
219GO:0032259: methylation3.59E-02
220GO:0016042: lipid catabolic process3.67E-02
221GO:0010073: meristem maintenance3.79E-02
222GO:0006825: copper ion transport3.79E-02
223GO:0051302: regulation of cell division3.79E-02
224GO:0006418: tRNA aminoacylation for protein translation3.79E-02
225GO:0008380: RNA splicing3.83E-02
226GO:0031347: regulation of defense response4.02E-02
227GO:0006260: DNA replication4.02E-02
228GO:0010431: seed maturation4.05E-02
229GO:0048364: root development4.07E-02
230GO:0009664: plant-type cell wall organization4.17E-02
231GO:0030245: cellulose catabolic process4.32E-02
232GO:0010082: regulation of root meristem growth4.60E-02
233GO:0006284: base-excision repair4.88E-02
234GO:0010584: pollen exine formation4.88E-02
235GO:0010091: trichome branching4.88E-02
236GO:0048443: stamen development4.88E-02
RankGO TermAdjusted P value
1GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
2GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity0.00E+00
3GO:0004401: histidinol-phosphatase activity0.00E+00
4GO:0052834: inositol monophosphate phosphatase activity0.00E+00
5GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity0.00E+00
6GO:0016763: transferase activity, transferring pentosyl groups0.00E+00
7GO:0008859: exoribonuclease II activity0.00E+00
8GO:0071633: dihydroceramidase activity0.00E+00
9GO:0042834: peptidoglycan binding0.00E+00
10GO:0004141: dethiobiotin synthase activity0.00E+00
11GO:0003723: RNA binding1.25E-05
12GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity4.27E-04
13GO:0052381: tRNA dimethylallyltransferase activity6.31E-04
14GO:0004830: tryptophan-tRNA ligase activity6.31E-04
15GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor6.31E-04
16GO:0004654: polyribonucleotide nucleotidyltransferase activity6.31E-04
17GO:0010347: L-galactose-1-phosphate phosphatase activity6.31E-04
18GO:0004016: adenylate cyclase activity6.31E-04
19GO:1905201: gibberellin transmembrane transporter activity6.31E-04
20GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.31E-04
21GO:0016274: protein-arginine N-methyltransferase activity6.31E-04
22GO:0046030: inositol trisphosphate phosphatase activity6.31E-04
23GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.31E-04
24GO:0004222: metalloendopeptidase activity7.04E-04
25GO:0003727: single-stranded RNA binding8.99E-04
26GO:0008168: methyltransferase activity1.07E-03
27GO:0008173: RNA methyltransferase activity1.10E-03
28GO:0019843: rRNA binding1.13E-03
29GO:0052833: inositol monophosphate 4-phosphatase activity1.36E-03
30GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.36E-03
31GO:0005078: MAP-kinase scaffold activity1.36E-03
32GO:0032454: histone demethylase activity (H3-K9 specific)1.36E-03
33GO:0009884: cytokinin receptor activity1.36E-03
34GO:0042389: omega-3 fatty acid desaturase activity1.36E-03
35GO:0004809: tRNA (guanine-N2-)-methyltransferase activity1.36E-03
36GO:0052832: inositol monophosphate 3-phosphatase activity1.36E-03
37GO:0008934: inositol monophosphate 1-phosphatase activity1.36E-03
38GO:0003690: double-stranded DNA binding2.14E-03
39GO:0042781: 3'-tRNA processing endoribonuclease activity2.24E-03
40GO:0016805: dipeptidase activity2.24E-03
41GO:0005034: osmosensor activity2.24E-03
42GO:0017150: tRNA dihydrouridine synthase activity2.24E-03
43GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.41E-03
44GO:0003725: double-stranded RNA binding2.74E-03
45GO:0000175: 3'-5'-exoribonuclease activity2.74E-03
46GO:0003700: transcription factor activity, sequence-specific DNA binding2.75E-03
47GO:0009041: uridylate kinase activity3.25E-03
48GO:0001872: (1->3)-beta-D-glucan binding3.25E-03
49GO:0003883: CTP synthase activity3.25E-03
50GO:0005253: anion channel activity4.38E-03
51GO:0004930: G-protein coupled receptor activity4.38E-03
52GO:0016279: protein-lysine N-methyltransferase activity4.38E-03
53GO:0010011: auxin binding4.38E-03
54GO:0010328: auxin influx transmembrane transporter activity4.38E-03
55GO:0004519: endonuclease activity4.53E-03
56GO:0043565: sequence-specific DNA binding4.56E-03
57GO:0003697: single-stranded DNA binding4.84E-03
58GO:0008725: DNA-3-methyladenine glycosylase activity5.63E-03
59GO:0004888: transmembrane signaling receptor activity5.63E-03
60GO:0030570: pectate lyase activity6.25E-03
61GO:0003677: DNA binding6.46E-03
62GO:0004784: superoxide dismutase activity6.99E-03
63GO:0005247: voltage-gated chloride channel activity6.99E-03
64GO:0003688: DNA replication origin binding6.99E-03
65GO:0031177: phosphopantetheine binding6.99E-03
66GO:0008289: lipid binding7.36E-03
67GO:0004674: protein serine/threonine kinase activity8.43E-03
68GO:0019900: kinase binding8.45E-03
69GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.45E-03
70GO:0016832: aldehyde-lyase activity8.45E-03
71GO:0000035: acyl binding8.45E-03
72GO:0004871: signal transducer activity9.39E-03
73GO:0019901: protein kinase binding9.97E-03
74GO:0030515: snoRNA binding1.00E-02
75GO:0005515: protein binding1.02E-02
76GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.17E-02
77GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.34E-02
78GO:0003724: RNA helicase activity1.34E-02
79GO:0008237: metallopeptidase activity1.38E-02
80GO:0000989: transcription factor activity, transcription factor binding1.53E-02
81GO:0016788: hydrolase activity, acting on ester bonds1.61E-02
82GO:0008026: ATP-dependent helicase activity1.66E-02
83GO:0031490: chromatin DNA binding1.72E-02
84GO:0009672: auxin:proton symporter activity1.72E-02
85GO:0004004: ATP-dependent RNA helicase activity1.83E-02
86GO:0004673: protein histidine kinase activity1.92E-02
87GO:0008515: sucrose transmembrane transporter activity2.13E-02
88GO:0000976: transcription regulatory region sequence-specific DNA binding2.34E-02
89GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.42E-02
90GO:0052689: carboxylic ester hydrolase activity2.50E-02
91GO:0004022: alcohol dehydrogenase (NAD) activity2.57E-02
92GO:0010329: auxin efflux transmembrane transporter activity2.57E-02
93GO:0031072: heat shock protein binding2.57E-02
94GO:0000155: phosphorelay sensor kinase activity2.57E-02
95GO:0009982: pseudouridine synthase activity2.57E-02
96GO:0005524: ATP binding2.61E-02
97GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.80E-02
98GO:0042803: protein homodimerization activity3.02E-02
99GO:0051119: sugar transmembrane transporter activity3.04E-02
100GO:0004190: aspartic-type endopeptidase activity3.04E-02
101GO:0008017: microtubule binding3.26E-02
102GO:0003714: transcription corepressor activity3.53E-02
103GO:0043621: protein self-association3.60E-02
104GO:0015293: symporter activity3.74E-02
105GO:0043424: protein histidine kinase binding3.79E-02
106GO:0015079: potassium ion transmembrane transporter activity3.79E-02
107GO:0004540: ribonuclease activity4.05E-02
108GO:0008810: cellulase activity4.60E-02
109GO:0003777: microtubule motor activity4.94E-02
110GO:0015171: amino acid transmembrane transporter activity4.94E-02
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Gene type



Gene DE type