co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
4	GO:0071474: cellular hyperosmotic response	0.00E+00
5	GO:2001294: malonyl-CoA catabolic process	0.00E+00
6	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
7	GO:0097275: cellular ammonia homeostasis	0.00E+00
8	GO:2000469: negative regulation of peroxidase activity	0.00E+00
9	GO:0031054: pre-miRNA processing	0.00E+00
10	GO:0033494: ferulate metabolic process	0.00E+00
11	GO:0090279: regulation of calcium ion import	0.00E+00
12	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
13	GO:0051924: regulation of calcium ion transport	0.00E+00
14	GO:0055114: oxidation-reduction process	1.07E-05
15	GO:0007155: cell adhesion	2.96E-05
16	GO:0009647: skotomorphogenesis	8.30E-05
17	GO:0006021: inositol biosynthetic process	1.44E-04
18	GO:0010143: cutin biosynthetic process	2.10E-04
19	GO:0009904: chloroplast accumulation movement	2.20E-04
20	GO:0045038: protein import into chloroplast thylakoid membrane	2.20E-04
21	GO:0045962: positive regulation of development, heterochronic	3.11E-04
22	GO:0009903: chloroplast avoidance movement	4.15E-04
23	GO:0010426: DNA methylation on cytosine within a CHH sequence	5.12E-04
24	GO:0000481: maturation of 5S rRNA	5.12E-04
25	GO:0006659: phosphatidylserine biosynthetic process	5.12E-04
26	GO:0043686: co-translational protein modification	5.12E-04
27	GO:0046167: glycerol-3-phosphate biosynthetic process	5.12E-04
28	GO:0043007: maintenance of rDNA	5.12E-04
29	GO:1902458: positive regulation of stomatal opening	5.12E-04
30	GO:0034337: RNA folding	5.12E-04
31	GO:0010362: negative regulation of anion channel activity by blue light	5.12E-04
32	GO:0015969: guanosine tetraphosphate metabolic process	5.12E-04
33	GO:0031426: polycistronic mRNA processing	5.12E-04
34	GO:0016559: peroxisome fission	6.64E-04
35	GO:0006631: fatty acid metabolic process	7.01E-04
36	GO:0007018: microtubule-based movement	8.93E-04
37	GO:0030187: melatonin biosynthetic process	1.10E-03
38	GO:0010541: acropetal auxin transport	1.10E-03
39	GO:0006650: glycerophospholipid metabolic process	1.10E-03
40	GO:0010155: regulation of proton transport	1.10E-03
41	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.10E-03
42	GO:0015790: UDP-xylose transport	1.10E-03
43	GO:0051262: protein tetramerization	1.10E-03
44	GO:0044550: secondary metabolite biosynthetic process	1.11E-03
45	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.14E-03
46	GO:0043069: negative regulation of programmed cell death	1.33E-03
47	GO:0009641: shade avoidance	1.33E-03
48	GO:0010192: mucilage biosynthetic process	1.33E-03
49	GO:0009405: pathogenesis	1.80E-03
50	GO:0080055: low-affinity nitrate transport	1.80E-03
51	GO:0051604: protein maturation	1.80E-03
52	GO:0010160: formation of animal organ boundary	1.80E-03
53	GO:0006753: nucleoside phosphate metabolic process	1.80E-03
54	GO:0044375: regulation of peroxisome size	1.80E-03
55	GO:0000913: preprophase band assembly	1.80E-03
56	GO:0031022: nuclear migration along microfilament	1.80E-03
57	GO:0046168: glycerol-3-phosphate catabolic process	1.80E-03
58	GO:0010589: leaf proximal/distal pattern formation	1.80E-03
59	GO:0009416: response to light stimulus	2.00E-03
60	GO:0015995: chlorophyll biosynthetic process	2.09E-03
61	GO:0009266: response to temperature stimulus	2.26E-03
62	GO:0010207: photosystem II assembly	2.26E-03
63	GO:0009825: multidimensional cell growth	2.53E-03
64	GO:0046739: transport of virus in multicellular host	2.61E-03
65	GO:0006168: adenine salvage	2.61E-03
66	GO:0006164: purine nucleotide biosynthetic process	2.61E-03
67	GO:0009963: positive regulation of flavonoid biosynthetic process	2.61E-03
68	GO:1990019: protein storage vacuole organization	2.61E-03
69	GO:0006166: purine ribonucleoside salvage	2.61E-03
70	GO:0006020: inositol metabolic process	2.61E-03
71	GO:0009152: purine ribonucleotide biosynthetic process	2.61E-03
72	GO:0046653: tetrahydrofolate metabolic process	2.61E-03
73	GO:0010239: chloroplast mRNA processing	2.61E-03
74	GO:0043481: anthocyanin accumulation in tissues in response to UV light	2.61E-03
75	GO:0006072: glycerol-3-phosphate metabolic process	2.61E-03
76	GO:0042753: positive regulation of circadian rhythm	2.82E-03
77	GO:0048527: lateral root development	2.87E-03
78	GO:0009637: response to blue light	3.22E-03
79	GO:0009649: entrainment of circadian clock	3.52E-03
80	GO:0008295: spermidine biosynthetic process	3.52E-03
81	GO:0032366: intracellular sterol transport	3.52E-03
82	GO:0048442: sepal development	3.52E-03
83	GO:2000306: positive regulation of photomorphogenesis	3.52E-03
84	GO:0035279: mRNA cleavage involved in gene silencing by miRNA	3.52E-03
85	GO:0006633: fatty acid biosynthetic process	4.28E-03
86	GO:0009640: photomorphogenesis	4.46E-03
87	GO:0046283: anthocyanin-containing compound metabolic process	4.52E-03
88	GO:0006564: L-serine biosynthetic process	4.52E-03
89	GO:0010236: plastoquinone biosynthetic process	4.52E-03
90	GO:0031365: N-terminal protein amino acid modification	4.52E-03
91	GO:1902183: regulation of shoot apical meristem development	4.52E-03
92	GO:0044209: AMP salvage	4.52E-03
93	GO:0010158: abaxial cell fate specification	4.52E-03
94	GO:0006465: signal peptide processing	4.52E-03
95	GO:0034052: positive regulation of plant-type hypersensitive response	4.52E-03
96	GO:0048443: stamen development	4.94E-03
97	GO:0000741: karyogamy	5.60E-03
98	GO:0046855: inositol phosphate dephosphorylation	5.60E-03
99	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	5.60E-03
100	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.60E-03
101	GO:0060918: auxin transport	5.60E-03
102	GO:0009958: positive gravitropism	6.25E-03
103	GO:0009585: red, far-red light phototransduction	6.54E-03
104	GO:0048280: vesicle fusion with Golgi apparatus	6.75E-03
105	GO:0030488: tRNA methylation	6.75E-03
106	GO:0009648: photoperiodism	6.75E-03
107	GO:0042372: phylloquinone biosynthetic process	6.75E-03
108	GO:0010076: maintenance of floral meristem identity	6.75E-03
109	GO:0006857: oligopeptide transport	7.13E-03
110	GO:0008654: phospholipid biosynthetic process	7.22E-03
111	GO:0009791: post-embryonic development	7.22E-03
112	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	7.99E-03
113	GO:0006400: tRNA modification	7.99E-03
114	GO:0030307: positive regulation of cell growth	7.99E-03
115	GO:0035196: production of miRNAs involved in gene silencing by miRNA	7.99E-03
116	GO:0009395: phospholipid catabolic process	7.99E-03
117	GO:0015937: coenzyme A biosynthetic process	7.99E-03
118	GO:0010583: response to cyclopentenone	8.27E-03
119	GO:0016032: viral process	8.27E-03
120	GO:0043068: positive regulation of programmed cell death	9.31E-03
121	GO:0010078: maintenance of root meristem identity	9.31E-03
122	GO:0032508: DNA duplex unwinding	9.31E-03
123	GO:2000070: regulation of response to water deprivation	9.31E-03
124	GO:0009639: response to red or far red light	9.39E-03
125	GO:0007186: G-protein coupled receptor signaling pathway	1.07E-02
126	GO:0043562: cellular response to nitrogen levels	1.07E-02
127	GO:0009932: cell tip growth	1.07E-02
128	GO:0015996: chlorophyll catabolic process	1.07E-02
129	GO:0010027: thylakoid membrane organization	1.12E-02
130	GO:0048507: meristem development	1.22E-02
131	GO:0006189: 'de novo' IMP biosynthetic process	1.22E-02
132	GO:0010206: photosystem II repair	1.22E-02
133	GO:2000024: regulation of leaf development	1.22E-02
134	GO:0009638: phototropism	1.37E-02
135	GO:0010267: production of ta-siRNAs involved in RNA interference	1.37E-02
136	GO:0010018: far-red light signaling pathway	1.37E-02
137	GO:0006535: cysteine biosynthetic process from serine	1.53E-02
138	GO:0048441: petal development	1.53E-02
139	GO:0010215: cellulose microfibril organization	1.53E-02
140	GO:0006896: Golgi to vacuole transport	1.53E-02
141	GO:0000160: phosphorelay signal transduction system	1.55E-02
142	GO:0006811: ion transport	1.62E-02
143	GO:0018119: peptidyl-cysteine S-nitrosylation	1.69E-02
144	GO:0009684: indoleacetic acid biosynthetic process	1.69E-02
145	GO:0000038: very long-chain fatty acid metabolic process	1.69E-02
146	GO:0007568: aging	1.70E-02
147	GO:0010119: regulation of stomatal movement	1.70E-02
148	GO:0016024: CDP-diacylglycerol biosynthetic process	1.86E-02
149	GO:0045037: protein import into chloroplast stroma	1.86E-02
150	GO:0008361: regulation of cell size	1.86E-02
151	GO:0006790: sulfur compound metabolic process	1.86E-02
152	GO:0009785: blue light signaling pathway	2.04E-02
153	GO:0006006: glucose metabolic process	2.04E-02
154	GO:0030036: actin cytoskeleton organization	2.04E-02
155	GO:0018107: peptidyl-threonine phosphorylation	2.04E-02
156	GO:0009718: anthocyanin-containing compound biosynthetic process	2.04E-02
157	GO:0009767: photosynthetic electron transport chain	2.04E-02
158	GO:0030048: actin filament-based movement	2.04E-02
159	GO:0010588: cotyledon vascular tissue pattern formation	2.04E-02
160	GO:0007623: circadian rhythm	2.06E-02
161	GO:0010020: chloroplast fission	2.23E-02
162	GO:0010223: secondary shoot formation	2.23E-02
163	GO:0019253: reductive pentose-phosphate cycle	2.23E-02
164	GO:0009887: animal organ morphogenesis	2.23E-02
165	GO:0010540: basipetal auxin transport	2.23E-02
166	GO:0048467: gynoecium development	2.23E-02
167	GO:0034605: cellular response to heat	2.23E-02
168	GO:0048440: carpel development	2.23E-02
169	GO:0006541: glutamine metabolic process	2.23E-02
170	GO:0006629: lipid metabolic process	2.39E-02
171	GO:0046854: phosphatidylinositol phosphorylation	2.41E-02
172	GO:0007031: peroxisome organization	2.41E-02
173	GO:0042343: indole glucosinolate metabolic process	2.41E-02
174	GO:0006636: unsaturated fatty acid biosynthetic process	2.61E-02
175	GO:0000162: tryptophan biosynthetic process	2.61E-02
176	GO:0010025: wax biosynthetic process	2.61E-02
177	GO:0009965: leaf morphogenesis	2.71E-02
178	GO:0000027: ribosomal large subunit assembly	2.81E-02
179	GO:0006289: nucleotide-excision repair	2.81E-02
180	GO:0007010: cytoskeleton organization	2.81E-02
181	GO:0019344: cysteine biosynthetic process	2.81E-02
182	GO:0009944: polarity specification of adaxial/abaxial axis	2.81E-02
183	GO:0080147: root hair cell development	2.81E-02
184	GO:0009768: photosynthesis, light harvesting in photosystem I	3.01E-02
185	GO:0007017: microtubule-based process	3.01E-02
186	GO:0008299: isoprenoid biosynthetic process	3.01E-02
187	GO:0048511: rhythmic process	3.22E-02
188	GO:0098542: defense response to other organism	3.22E-02
189	GO:0019915: lipid storage	3.22E-02
190	GO:0006306: DNA methylation	3.22E-02
191	GO:0048278: vesicle docking	3.22E-02
192	GO:0019748: secondary metabolic process	3.44E-02
193	GO:0009814: defense response, incompatible interaction	3.44E-02
194	GO:0010017: red or far-red light signaling pathway	3.44E-02
195	GO:0009294: DNA mediated transformation	3.66E-02
196	GO:0071369: cellular response to ethylene stimulus	3.66E-02
197	GO:0019722: calcium-mediated signaling	3.88E-02
198	GO:0009306: protein secretion	3.88E-02
199	GO:0042147: retrograde transport, endosome to Golgi	4.11E-02
200	GO:0009723: response to ethylene	4.25E-02
201	GO:0080022: primary root development	4.34E-02
202	GO:0010087: phloem or xylem histogenesis	4.34E-02
203	GO:0010154: fruit development	4.58E-02
204	GO:0010197: polar nucleus fusion	4.58E-02
205	GO:0010305: leaf vascular tissue pattern formation	4.58E-02
206	GO:0010182: sugar mediated signaling pathway	4.58E-02
207	GO:0009741: response to brassinosteroid	4.58E-02
208	GO:0006520: cellular amino acid metabolic process	4.58E-02
209	GO:0045489: pectin biosynthetic process	4.58E-02
210	GO:0061025: membrane fusion	4.82E-02
211	GO:0009646: response to absence of light	4.82E-02
212	GO:0009742: brassinosteroid mediated signaling pathway	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
5	GO:1990534: thermospermine oxidase activity	0.00E+00
6	GO:0036033: mediator complex binding	0.00E+00
7	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
8	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
9	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
10	GO:0080132: fatty acid alpha-hydroxylase activity	0.00E+00
11	GO:0050613: delta14-sterol reductase activity	0.00E+00
12	GO:0008017: microtubule binding	4.34E-05
13	GO:0016491: oxidoreductase activity	8.74E-05
14	GO:0003777: microtubule motor activity	2.68E-04
15	GO:0000293: ferric-chelate reductase activity	3.11E-04
16	GO:0042586: peptide deformylase activity	5.12E-04
17	GO:0004328: formamidase activity	5.12E-04
18	GO:0031957: very long-chain fatty acid-CoA ligase activity	5.12E-04
19	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	5.12E-04
20	GO:0005227: calcium activated cation channel activity	5.12E-04
21	GO:0010945: CoA pyrophosphatase activity	5.12E-04
22	GO:0008934: inositol monophosphate 1-phosphatase activity	1.10E-03
23	GO:0052833: inositol monophosphate 4-phosphatase activity	1.10E-03
24	GO:0005464: UDP-xylose transmembrane transporter activity	1.10E-03
25	GO:0008728: GTP diphosphokinase activity	1.10E-03
26	GO:0004512: inositol-3-phosphate synthase activity	1.10E-03
27	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.10E-03
28	GO:0048531: beta-1,3-galactosyltransferase activity	1.10E-03
29	GO:0050017: L-3-cyanoalanine synthase activity	1.10E-03
30	GO:0042389: omega-3 fatty acid desaturase activity	1.10E-03
31	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	1.10E-03
32	GO:0004617: phosphoglycerate dehydrogenase activity	1.10E-03
33	GO:0004766: spermidine synthase activity	1.10E-03
34	GO:0052832: inositol monophosphate 3-phosphatase activity	1.10E-03
35	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	1.10E-03
36	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	1.10E-03
37	GO:0016630: protochlorophyllide reductase activity	1.10E-03
38	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	1.10E-03
39	GO:0005506: iron ion binding	1.12E-03
40	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.56E-03
41	GO:0042802: identical protein binding	1.73E-03
42	GO:0004148: dihydrolipoyl dehydrogenase activity	1.80E-03
43	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.80E-03
44	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.80E-03
45	GO:0070402: NADPH binding	1.80E-03
46	GO:0008864: formyltetrahydrofolate deformylase activity	1.80E-03
47	GO:0004049: anthranilate synthase activity	1.80E-03
48	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.80E-03
49	GO:0005504: fatty acid binding	1.80E-03
50	GO:0050734: hydroxycinnamoyltransferase activity	1.80E-03
51	GO:0003913: DNA photolyase activity	1.80E-03
52	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.80E-03
53	GO:0004565: beta-galactosidase activity	2.00E-03
54	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	2.61E-03
55	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.61E-03
56	GO:0009882: blue light photoreceptor activity	2.61E-03
57	GO:0035198: miRNA binding	2.61E-03
58	GO:0048027: mRNA 5'-UTR binding	2.61E-03
59	GO:0003999: adenine phosphoribosyltransferase activity	2.61E-03
60	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	2.61E-03
61	GO:0003993: acid phosphatase activity	3.41E-03
62	GO:0070628: proteasome binding	3.52E-03
63	GO:0045430: chalcone isomerase activity	3.52E-03
64	GO:0019825: oxygen binding	4.33E-03
65	GO:0016846: carbon-sulfur lyase activity	4.52E-03
66	GO:0030570: pectate lyase activity	4.54E-03
67	GO:0016208: AMP binding	5.60E-03
68	GO:0035673: oligopeptide transmembrane transporter activity	5.60E-03
69	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	5.60E-03
70	GO:0042578: phosphoric ester hydrolase activity	5.60E-03
71	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	5.60E-03
72	GO:0031593: polyubiquitin binding	5.60E-03
73	GO:0000210: NAD+ diphosphatase activity	5.60E-03
74	GO:0016832: aldehyde-lyase activity	6.75E-03
75	GO:0102391: decanoate--CoA ligase activity	6.75E-03
76	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	6.75E-03
77	GO:0005261: cation channel activity	6.75E-03
78	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	6.75E-03
79	GO:0009927: histidine phosphotransfer kinase activity	6.75E-03
80	GO:0004124: cysteine synthase activity	6.75E-03
81	GO:0051753: mannan synthase activity	6.75E-03
82	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.75E-03
83	GO:0004467: long-chain fatty acid-CoA ligase activity	7.99E-03
84	GO:0043022: ribosome binding	9.31E-03
85	GO:0020037: heme binding	9.74E-03
86	GO:0016788: hydrolase activity, acting on ester bonds	9.91E-03
87	GO:0016722: oxidoreductase activity, oxidizing metal ions	9.99E-03
88	GO:0016746: transferase activity, transferring acyl groups	1.07E-02
89	GO:0008173: RNA methyltransferase activity	1.07E-02
90	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.07E-02
91	GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity	1.07E-02
92	GO:0103095: wax ester synthase activity	1.07E-02
93	GO:0008236: serine-type peptidase activity	1.40E-02
94	GO:0052689: carboxylic ester hydrolase activity	1.55E-02
95	GO:0047372: acylglycerol lipase activity	1.69E-02
96	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.70E-02
97	GO:0015198: oligopeptide transporter activity	1.86E-02
98	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.86E-02
99	GO:0008081: phosphoric diester hydrolase activity	2.04E-02
100	GO:0010329: auxin efflux transmembrane transporter activity	2.04E-02
101	GO:0000149: SNARE binding	2.04E-02
102	GO:0000155: phosphorelay sensor kinase activity	2.04E-02
103	GO:0003725: double-stranded RNA binding	2.04E-02
104	GO:0008131: primary amine oxidase activity	2.23E-02
105	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.23E-02
106	GO:0003774: motor activity	2.23E-02
107	GO:0008146: sulfotransferase activity	2.41E-02
108	GO:0005484: SNAP receptor activity	2.41E-02
109	GO:0004185: serine-type carboxypeptidase activity	2.41E-02
110	GO:0035091: phosphatidylinositol binding	2.61E-02
111	GO:0031409: pigment binding	2.61E-02
112	GO:0043130: ubiquitin binding	2.81E-02
113	GO:0051287: NAD binding	2.92E-02
114	GO:0051087: chaperone binding	3.01E-02
115	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.96E-02
116	GO:0050660: flavin adenine dinucleotide binding	4.25E-02
117	GO:0008080: N-acetyltransferase activity	4.58E-02
118	GO:0010181: FMN binding	4.82E-02
119	GO:0016853: isomerase activity	4.82E-02