Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000505: regulation of energy homeostasis0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0017038: protein import0.00E+00
4GO:0016553: base conversion or substitution editing0.00E+00
5GO:0090279: regulation of calcium ion import0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0009877: nodulation0.00E+00
8GO:0042820: vitamin B6 catabolic process0.00E+00
9GO:0090470: shoot organ boundary specification0.00E+00
10GO:0042817: pyridoxal metabolic process0.00E+00
11GO:0042407: cristae formation0.00E+00
12GO:0042821: pyridoxal biosynthetic process0.00E+00
13GO:0071474: cellular hyperosmotic response0.00E+00
14GO:0015882: L-ascorbic acid transport0.00E+00
15GO:0018023: peptidyl-lysine trimethylation0.00E+00
16GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
17GO:0015995: chlorophyll biosynthetic process1.18E-14
18GO:0006021: inositol biosynthetic process1.07E-06
19GO:0006782: protoporphyrinogen IX biosynthetic process1.60E-06
20GO:0006783: heme biosynthetic process3.62E-05
21GO:0055114: oxidation-reduction process4.38E-05
22GO:0006779: porphyrin-containing compound biosynthetic process4.79E-05
23GO:0009658: chloroplast organization5.91E-05
24GO:0010207: photosystem II assembly1.41E-04
25GO:0010027: thylakoid membrane organization1.46E-04
26GO:0009904: chloroplast accumulation movement1.63E-04
27GO:0045038: protein import into chloroplast thylakoid membrane1.63E-04
28GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.32E-04
29GO:0046855: inositol phosphate dephosphorylation2.32E-04
30GO:0009903: chloroplast avoidance movement3.12E-04
31GO:1902458: positive regulation of stomatal opening4.23E-04
32GO:0010028: xanthophyll cycle4.23E-04
33GO:0034337: RNA folding4.23E-04
34GO:0048363: mucilage pectin metabolic process4.23E-04
35GO:0009443: pyridoxal 5'-phosphate salvage4.23E-04
36GO:0009090: homoserine biosynthetic process4.23E-04
37GO:0010362: negative regulation of anion channel activity by blue light4.23E-04
38GO:0015969: guanosine tetraphosphate metabolic process4.23E-04
39GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.23E-04
40GO:0031426: polycistronic mRNA processing4.23E-04
41GO:0043489: RNA stabilization4.23E-04
42GO:0015671: oxygen transport4.23E-04
43GO:0043953: protein transport by the Tat complex4.23E-04
44GO:0000481: maturation of 5S rRNA4.23E-04
45GO:0006659: phosphatidylserine biosynthetic process4.23E-04
46GO:0065002: intracellular protein transmembrane transport4.23E-04
47GO:0043686: co-translational protein modification4.23E-04
48GO:2000070: regulation of response to water deprivation5.03E-04
49GO:0009791: post-embryonic development6.83E-04
50GO:0015979: photosynthesis6.91E-04
51GO:0010206: photosystem II repair7.36E-04
52GO:0010155: regulation of proton transport9.16E-04
53GO:1903426: regulation of reactive oxygen species biosynthetic process9.16E-04
54GO:0051262: protein tetramerization9.16E-04
55GO:0006739: NADP metabolic process9.16E-04
56GO:0018026: peptidyl-lysine monomethylation9.16E-04
57GO:0090342: regulation of cell aging9.16E-04
58GO:0071668: plant-type cell wall assembly9.16E-04
59GO:0006423: cysteinyl-tRNA aminoacylation9.16E-04
60GO:0006435: threonyl-tRNA aminoacylation9.16E-04
61GO:0080183: response to photooxidative stress9.16E-04
62GO:0009089: lysine biosynthetic process via diaminopimelate1.16E-03
63GO:0006790: sulfur compound metabolic process1.33E-03
64GO:0016024: CDP-diacylglycerol biosynthetic process1.33E-03
65GO:0005977: glycogen metabolic process1.49E-03
66GO:0000913: preprophase band assembly1.49E-03
67GO:0033591: response to L-ascorbic acid1.49E-03
68GO:0031022: nuclear migration along microfilament1.49E-03
69GO:0034051: negative regulation of plant-type hypersensitive response1.49E-03
70GO:0080055: low-affinity nitrate transport1.49E-03
71GO:0051604: protein maturation1.49E-03
72GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.49E-03
73GO:0009266: response to temperature stimulus1.70E-03
74GO:0046854: phosphatidylinositol phosphorylation1.91E-03
75GO:0009067: aspartate family amino acid biosynthetic process2.15E-03
76GO:0010371: regulation of gibberellin biosynthetic process2.15E-03
77GO:0006020: inositol metabolic process2.15E-03
78GO:0009102: biotin biosynthetic process2.15E-03
79GO:2001289: lipid X metabolic process2.15E-03
80GO:1901000: regulation of response to salt stress2.15E-03
81GO:0009152: purine ribonucleotide biosynthetic process2.15E-03
82GO:0046653: tetrahydrofolate metabolic process2.15E-03
83GO:0009052: pentose-phosphate shunt, non-oxidative branch2.15E-03
84GO:0033014: tetrapyrrole biosynthetic process2.15E-03
85GO:0010239: chloroplast mRNA processing2.15E-03
86GO:0008615: pyridoxine biosynthetic process2.15E-03
87GO:0006424: glutamyl-tRNA aminoacylation2.15E-03
88GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.15E-03
89GO:0010073: meristem maintenance2.60E-03
90GO:0007017: microtubule-based process2.60E-03
91GO:0048511: rhythmic process2.86E-03
92GO:0010109: regulation of photosynthesis2.89E-03
93GO:0009765: photosynthesis, light harvesting2.89E-03
94GO:0006734: NADH metabolic process2.89E-03
95GO:0010021: amylopectin biosynthetic process2.89E-03
96GO:0007623: circadian rhythm3.19E-03
97GO:0016123: xanthophyll biosynthetic process3.71E-03
98GO:0000304: response to singlet oxygen3.71E-03
99GO:0080110: sporopollenin biosynthetic process3.71E-03
100GO:0032543: mitochondrial translation3.71E-03
101GO:0006564: L-serine biosynthetic process3.71E-03
102GO:0010236: plastoquinone biosynthetic process3.71E-03
103GO:0016120: carotene biosynthetic process3.71E-03
104GO:0031365: N-terminal protein amino acid modification3.71E-03
105GO:0008380: RNA splicing4.18E-03
106GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.59E-03
107GO:0006655: phosphatidylglycerol biosynthetic process4.59E-03
108GO:0010190: cytochrome b6f complex assembly4.59E-03
109GO:0045962: positive regulation of development, heterochronic4.59E-03
110GO:0007018: microtubule-based movement5.05E-03
111GO:0010310: regulation of hydrogen peroxide metabolic process5.53E-03
112GO:0030488: tRNA methylation5.53E-03
113GO:0009854: oxidative photosynthetic carbon pathway5.53E-03
114GO:0009088: threonine biosynthetic process5.53E-03
115GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.54E-03
116GO:0000105: histidine biosynthetic process7.60E-03
117GO:0016559: peroxisome fission7.60E-03
118GO:0048564: photosystem I assembly7.60E-03
119GO:0006605: protein targeting7.60E-03
120GO:0032508: DNA duplex unwinding7.60E-03
121GO:0042255: ribosome assembly7.60E-03
122GO:0006353: DNA-templated transcription, termination7.60E-03
123GO:0022900: electron transport chain8.73E-03
124GO:0015996: chlorophyll catabolic process8.73E-03
125GO:0007186: G-protein coupled receptor signaling pathway8.73E-03
126GO:0006526: arginine biosynthetic process8.73E-03
127GO:0032544: plastid translation8.73E-03
128GO:0006508: proteolysis9.76E-03
129GO:0098656: anion transmembrane transport9.92E-03
130GO:0009245: lipid A biosynthetic process9.92E-03
131GO:0019432: triglyceride biosynthetic process9.92E-03
132GO:0048507: meristem development9.92E-03
133GO:0009735: response to cytokinin1.00E-02
134GO:0018298: protein-chromophore linkage1.10E-02
135GO:0005982: starch metabolic process1.12E-02
136GO:0009638: phototropism1.12E-02
137GO:0043067: regulation of programmed cell death1.12E-02
138GO:0009086: methionine biosynthetic process1.12E-02
139GO:1900865: chloroplast RNA modification1.12E-02
140GO:0048354: mucilage biosynthetic process involved in seed coat development1.12E-02
141GO:0000160: phosphorelay signal transduction system1.16E-02
142GO:0010629: negative regulation of gene expression1.24E-02
143GO:0006535: cysteine biosynthetic process from serine1.24E-02
144GO:0006633: fatty acid biosynthetic process1.27E-02
145GO:0019684: photosynthesis, light reaction1.38E-02
146GO:0009773: photosynthetic electron transport in photosystem I1.38E-02
147GO:0008285: negative regulation of cell proliferation1.38E-02
148GO:0009853: photorespiration1.40E-02
149GO:0010228: vegetative to reproductive phase transition of meristem1.52E-02
150GO:0045037: protein import into chloroplast stroma1.52E-02
151GO:0018107: peptidyl-threonine phosphorylation1.66E-02
152GO:0009718: anthocyanin-containing compound biosynthetic process1.66E-02
153GO:0030048: actin filament-based movement1.66E-02
154GO:0006631: fatty acid metabolic process1.66E-02
155GO:0009785: blue light signaling pathway1.66E-02
156GO:0010143: cutin biosynthetic process1.81E-02
157GO:0010020: chloroplast fission1.81E-02
158GO:0019853: L-ascorbic acid biosynthetic process1.96E-02
159GO:0000162: tryptophan biosynthetic process2.12E-02
160GO:0006636: unsaturated fatty acid biosynthetic process2.12E-02
161GO:0015031: protein transport2.25E-02
162GO:0019344: cysteine biosynthetic process2.29E-02
163GO:0008299: isoprenoid biosynthetic process2.45E-02
164GO:0042254: ribosome biogenesis2.54E-02
165GO:0010431: seed maturation2.62E-02
166GO:0061077: chaperone-mediated protein folding2.62E-02
167GO:0031408: oxylipin biosynthetic process2.62E-02
168GO:0016114: terpenoid biosynthetic process2.62E-02
169GO:0019748: secondary metabolic process2.80E-02
170GO:0016226: iron-sulfur cluster assembly2.80E-02
171GO:0010017: red or far-red light signaling pathway2.80E-02
172GO:0035428: hexose transmembrane transport2.80E-02
173GO:0080092: regulation of pollen tube growth2.80E-02
174GO:0010227: floral organ abscission2.98E-02
175GO:0005975: carbohydrate metabolic process3.12E-02
176GO:0010584: pollen exine formation3.16E-02
177GO:0016310: phosphorylation3.28E-02
178GO:0016117: carotenoid biosynthetic process3.34E-02
179GO:0051028: mRNA transport3.34E-02
180GO:0006412: translation3.48E-02
181GO:0046777: protein autophosphorylation3.53E-02
182GO:0000271: polysaccharide biosynthetic process3.54E-02
183GO:0042335: cuticle development3.54E-02
184GO:0006396: RNA processing3.57E-02
185GO:0046323: glucose import3.73E-02
186GO:0009741: response to brassinosteroid3.73E-02
187GO:0006520: cellular amino acid metabolic process3.73E-02
188GO:0045489: pectin biosynthetic process3.73E-02
189GO:0010197: polar nucleus fusion3.73E-02
190GO:0010182: sugar mediated signaling pathway3.73E-02
191GO:0042752: regulation of circadian rhythm3.93E-02
192GO:0009646: response to absence of light3.93E-02
193GO:0010183: pollen tube guidance4.13E-02
194GO:0019252: starch biosynthetic process4.13E-02
195GO:0008654: phospholipid biosynthetic process4.13E-02
196GO:0000302: response to reactive oxygen species4.33E-02
197GO:0032502: developmental process4.54E-02
198GO:0016032: viral process4.54E-02
199GO:0030163: protein catabolic process4.75E-02
200GO:0010090: trichome morphogenesis4.75E-02
201GO:0042744: hydrogen peroxide catabolic process4.92E-02
202GO:0009567: double fertilization forming a zygote and endosperm4.96E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0036033: mediator complex binding0.00E+00
3GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
4GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
5GO:0005048: signal sequence binding0.00E+00
6GO:0004076: biotin synthase activity0.00E+00
7GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
8GO:0008887: glycerate kinase activity0.00E+00
9GO:0050613: delta14-sterol reductase activity0.00E+00
10GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
11GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
12GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
13GO:0009029: tetraacyldisaccharide 4'-kinase activity0.00E+00
14GO:0015229: L-ascorbic acid transporter activity0.00E+00
15GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
16GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
17GO:0045435: lycopene epsilon cyclase activity0.00E+00
18GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
19GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
20GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
21GO:0016851: magnesium chelatase activity3.72E-07
22GO:0052832: inositol monophosphate 3-phosphatase activity7.99E-06
23GO:0008934: inositol monophosphate 1-phosphatase activity7.99E-06
24GO:0052833: inositol monophosphate 4-phosphatase activity7.99E-06
25GO:0070402: NADPH binding2.76E-05
26GO:0005525: GTP binding7.86E-05
27GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.32E-04
28GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.12E-04
29GO:0019843: rRNA binding3.85E-04
30GO:0010347: L-galactose-1-phosphate phosphatase activity4.23E-04
31GO:0005344: oxygen transporter activity4.23E-04
32GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.23E-04
33GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.23E-04
34GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.23E-04
35GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity4.23E-04
36GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.23E-04
37GO:0005227: calcium activated cation channel activity4.23E-04
38GO:0004733: pyridoxamine-phosphate oxidase activity4.23E-04
39GO:0004856: xylulokinase activity4.23E-04
40GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.23E-04
41GO:0005080: protein kinase C binding4.23E-04
42GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.23E-04
43GO:0004325: ferrochelatase activity4.23E-04
44GO:0052857: NADPHX epimerase activity4.23E-04
45GO:0042586: peptide deformylase activity4.23E-04
46GO:0052856: NADHX epimerase activity4.23E-04
47GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.51E-04
48GO:0009977: proton motive force dependent protein transmembrane transporter activity9.16E-04
49GO:0004617: phosphoglycerate dehydrogenase activity9.16E-04
50GO:0004817: cysteine-tRNA ligase activity9.16E-04
51GO:0016630: protochlorophyllide reductase activity9.16E-04
52GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity9.16E-04
53GO:0004829: threonine-tRNA ligase activity9.16E-04
54GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity9.16E-04
55GO:0019156: isoamylase activity9.16E-04
56GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.16E-04
57GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.16E-04
58GO:0008728: GTP diphosphokinase activity9.16E-04
59GO:0004412: homoserine dehydrogenase activity9.16E-04
60GO:0004512: inositol-3-phosphate synthase activity9.16E-04
61GO:0050017: L-3-cyanoalanine synthase activity9.16E-04
62GO:0042389: omega-3 fatty acid desaturase activity9.16E-04
63GO:0016491: oxidoreductase activity1.12E-03
64GO:0003924: GTPase activity1.15E-03
65GO:0008864: formyltetrahydrofolate deformylase activity1.49E-03
66GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.49E-03
67GO:0080054: low-affinity nitrate transmembrane transporter activity1.49E-03
68GO:0015462: ATPase-coupled protein transmembrane transporter activity1.49E-03
69GO:0005504: fatty acid binding1.49E-03
70GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.49E-03
71GO:0003913: DNA photolyase activity1.49E-03
72GO:0004751: ribose-5-phosphate isomerase activity1.49E-03
73GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.49E-03
74GO:0008236: serine-type peptidase activity1.55E-03
75GO:0008266: poly(U) RNA binding1.70E-03
76GO:0004072: aspartate kinase activity2.15E-03
77GO:0048027: mRNA 5'-UTR binding2.15E-03
78GO:0009882: blue light photoreceptor activity2.15E-03
79GO:0043023: ribosomal large subunit binding2.15E-03
80GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.15E-03
81GO:0005528: FK506 binding2.36E-03
82GO:0045430: chalcone isomerase activity2.89E-03
83GO:0004045: aminoacyl-tRNA hydrolase activity2.89E-03
84GO:0016279: protein-lysine N-methyltransferase activity2.89E-03
85GO:0003959: NADPH dehydrogenase activity3.71E-03
86GO:0016773: phosphotransferase activity, alcohol group as acceptor3.71E-03
87GO:2001070: starch binding4.59E-03
88GO:0004556: alpha-amylase activity4.59E-03
89GO:0004130: cytochrome-c peroxidase activity4.59E-03
90GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.59E-03
91GO:0010181: FMN binding5.05E-03
92GO:0003723: RNA binding5.16E-03
93GO:0004124: cysteine synthase activity5.53E-03
94GO:0004017: adenylate kinase activity5.53E-03
95GO:0016832: aldehyde-lyase activity5.53E-03
96GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.53E-03
97GO:0005261: cation channel activity5.53E-03
98GO:0009927: histidine phosphotransfer kinase activity5.53E-03
99GO:0009881: photoreceptor activity6.54E-03
100GO:0005200: structural constituent of cytoskeleton7.48E-03
101GO:0008312: 7S RNA binding7.60E-03
102GO:0043022: ribosome binding7.60E-03
103GO:0004033: aldo-keto reductase (NADP) activity7.60E-03
104GO:0016597: amino acid binding7.94E-03
105GO:0008135: translation factor activity, RNA binding8.73E-03
106GO:0008173: RNA methyltransferase activity8.73E-03
107GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.73E-03
108GO:0016887: ATPase activity9.27E-03
109GO:0071949: FAD binding9.92E-03
110GO:0004252: serine-type endopeptidase activity1.08E-02
111GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.12E-02
112GO:0004743: pyruvate kinase activity1.12E-02
113GO:0030955: potassium ion binding1.12E-02
114GO:0003729: mRNA binding1.17E-02
115GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.27E-02
116GO:0047372: acylglycerol lipase activity1.38E-02
117GO:0005089: Rho guanyl-nucleotide exchange factor activity1.38E-02
118GO:0003746: translation elongation factor activity1.40E-02
119GO:0003993: acid phosphatase activity1.46E-02
120GO:0008017: microtubule binding1.52E-02
121GO:0031072: heat shock protein binding1.66E-02
122GO:0000155: phosphorelay sensor kinase activity1.66E-02
123GO:0004565: beta-galactosidase activity1.66E-02
124GO:0005315: inorganic phosphate transmembrane transporter activity1.66E-02
125GO:0003774: motor activity1.81E-02
126GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.81E-02
127GO:0042802: identical protein binding1.94E-02
128GO:0051537: 2 iron, 2 sulfur cluster binding1.95E-02
129GO:0051287: NAD binding2.19E-02
130GO:0051536: iron-sulfur cluster binding2.29E-02
131GO:0051087: chaperone binding2.45E-02
132GO:0004601: peroxidase activity2.48E-02
133GO:0003777: microtubule motor activity2.70E-02
134GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.80E-02
135GO:0005524: ATP binding2.97E-02
136GO:0030570: pectate lyase activity2.98E-02
137GO:0008514: organic anion transmembrane transporter activity3.16E-02
138GO:0003756: protein disulfide isomerase activity3.16E-02
139GO:0003727: single-stranded RNA binding3.16E-02
140GO:0005509: calcium ion binding3.39E-02
141GO:0008080: N-acetyltransferase activity3.73E-02
142GO:0016853: isomerase activity3.93E-02
143GO:0005355: glucose transmembrane transporter activity3.93E-02
144GO:0050662: coenzyme binding3.93E-02
145GO:0048038: quinone binding4.33E-02
146GO:0003824: catalytic activity4.50E-02
147GO:0000156: phosphorelay response regulator activity4.75E-02
148GO:0030170: pyridoxal phosphate binding4.80E-02
149GO:0016740: transferase activity4.83E-02
150GO:0016791: phosphatase activity4.96E-02
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Gene type



Gene DE type